LOC110507517 (LOC106580780)


Basic Information

Item Value
gene id LOC110507517
gene name LOC106580780
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10193680 ~ 10213605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965432.1
CCCCTGACCAGTAGAGAAGAAGGAGATTAacctgagtgagtgtgtgagagagaggagtgtttTAAAGCAGTGTGccgggcagagcagagcagacactCATAGCTGTCCAGCGCTGAGGGGGAATACTATACCGGAGCTCCAGAGGTGAACTTAGGATAGAGGACACCCTGAGGGATTTCCTGGGACAGATGGGATCTGAAAGGTTTGGCTGCAGCTGACAAGACTGACATCTCCTAAATATCCATTCAAAGTGGATGTGTCTGAGACACTCAGACAGGAGGAGTAGTGTGGAAGGAGCAGccccagagagagcagagaagaccCAGTGAGAGCAGAGAAGACCCAGTGAGAGCAGAGAAGACCCAGTGAGGAACACAGGGACTGGAGGCAGTGGAGCAGATATGGATGCAGGTCCTCTGACAGCCGAGGGAGAGGGCTCCTCTCCGGAGGGCGAGACGGTGTGTGCTGCGCTCGCCCGCTACGAGGCCACACTGAGAGATGCCGTGTGTGAGATCCACGTGGACATGAGCGCCTTCAAGCAGGGTGTGGAGCGTCGTCTGGAGGAGGCGACGGCCCACCCCAGCGAGGGCCCCCTAGGCCGGGCTGTGGCGCAGCTGCAGCAGGAGAACCGGCAGCTCCGGAGCCAGTTGGAGGCCCTTACCCGACAGGTAGAGCTCCTCACTGGGACAGTGTGCGACAGAGGCGCCCTGAtgactaacaacaacaacaaccaccaccagCACCAGCTAGCATCCATCCAGGCCcagacacacagcagcagccagGAGAGGGCGagccccccctccacctcccctacCAGCCCTGCTGGTGGCCCCAGCATGGGAGCCCTGACCGGGTCAGCCTCGGGCTCAGCCTCCAGCCCCACTGCCGCCCGCTTCTCCAGCCGAGCTACCTTCGCTGTGTCCAGCAAGACTAACaGTATTGAACGTGAGGAGCCGATAGAGGTGGATCCGGACCTTGTATCCCCTGGACTGGAGAATGGACACTCTACTACCCCAGAAAACTCGACAGTGTCATATGGATTGAGCTCGCCAGCCAATAACAACGTCCCTCATGAAAGCACGGCCCCTGTTGCCATGCGGATGCCACACCTACCCATCACCGCCACAACCAAGACGGCTGACCCCTCAGTTATGAAGAGCGAATCTCCCGCCAGTCCCGTACGCTCTAAGCCCTCGCCTGTATCAGAGCATACTGCCAACAACCAGCCTCAAGCCATCCAAGAATCCCCAATTCAACCAGtgtcGTCTATGAAGACATGGACCCCCAGTCTCAGCCGAGGTCTGGGCTCTCCTCGACTGTCAGAAAAGTCCTTGTCCGCTCCCCCGAAGTCAGTGACTTACTCTGGCCTcatccaacacaacacagacgGGGTGGAAGATGTGGGCGGGGACCTGCCTTTTGGAAGGGGAGTGGAGCGGAGGCGGGAGCTGGTGAGGTCACAGACGTTGCCGCGCAACCTTGGAGCTCAGGCCCGCCGGTCCATCTTTGAAAGGCTGGATTCTGAAGCCAGCAGTAGGCCCAAGCCCATGGACCCCAAGCCCAAGCTGAAGCGTTCTCAGAGCTTTGGTGTGTCCAGTGCCAGCAGCATCAAGCAGATTCTTCTGGAGTGGTGCCGCTCCAAAACCATAGGATACCAGAACATAGACATCCAGAACTTCTCGTCCAGTTGGAGCGACGGCATGGCCTTCTGTGCCCTGGTCCATTCCTTCTTCCCCACTGAGTTTGACTACAACGTGCTGACGCCTGCCGACCGCAAGCACAACTTTGAGCTGGCCTTCGGAACAGCGGAGGAGAAGGCGGGCTGTGACCGGCTCATCGAGGTGGACGATATGATGGTGATGGGGCGCAAGCCTGACCCCATGTGTGTCTTTACCTATGTCCAGTCCATGTACAACCACCTGCGCAAGTTTGAGTGATGAACGATGACCTGGCAGCTACTCGACGACATCaccgccccaccaccaccatcactctcTTGCTTTCAGGGACAGCAGCAATGCACACTGAGAGAACCACACTTCCCCCTGCTGGAATGGACAGAGTATTACAAGTATTTCTTCAGTTTGAGAGATGTTTCACTCTGCTATGTTGAGTGCTCACAGCTATTCACAAATAGAACAGGCTATATTATTCCTGTTTGTGTATGAGTGGCTGGGTTTTTATTCCCTGAAAGTCTGTGTTACatttcagagagaggggaaggatctTTCTCCCTTTATTTGGTGACTGACCATTTTTAAGGCTTATATTGGCACAGTTGCTGTTTGAGAGAATGGGAGAATCAACTCTTTGCTGAGGAGAAAAAGTAGTCCCATTGAAGAAGCTGCAAAAGGTCttgaacagtaggcctataaGACTGGACAAAGGACGAGGGTCCTGAGGATTGACACAAATCAGTCTAAATAGGATGCTATCATCATTTGGTTCCTTCTAGATATGTATTTGTTCAGGCttccttgactttattgtcccacTGTGGTTTCTCAGACCCAACTGTGTCTACAAAAGGCCTTGCATTGCAGCACAAACTAAAAGCTATTCCAAAGTTAGCTTTTTCATCAGCTGAACAGAGGAACCCAAGTACACTCACTATAAAGTTGAATGGTTTGCTATTTAAAGAGCTAGAACTGCAAAGATGAACTGCACATATGCATCAACTCGGTGCAAAGGTAAAATGGTCTATGTTCTTATAGTGTTCTTGTTATGGttgtgattttatttgattttcatagacaaaaaaaaagacaaaaataaATCCTAAATAAATTGTCACTTGTTTCACACA
>XM_036965433.1
CCCCTGACCAGTAGAGAAGAAGGAGATTAacctgagtgagtgtgtgagagagaggagtgtttTAAAGCAGTGTGccgggcagagcagagcagacactCATAGCTGTCCAGCGCTGAGGGGGAATACTATACCGGAGCTCCAGAGGTGAACTTAGGATAGAGGACACCCTGAGGGATTTCCTGGGACAGATGGGATCTGAAAGGTTTGGCTGCAGCTGACAAGACTGACATCTCCTAAATATCCATTCAAAGTGGATGTGTCTGAGACACTCAGACAGGAGGAGTAGTGTGGAAGGAGCAGccccagagagagcagagaagaccCAGTGAGAGCAGAGAAGACCCAGTGAGAGCAGAGAAGACCCAGTGAGGAACACAGGGACTGGAGGCAGTGGAGCAGATATGGATGCAGGTCCTCTGACAGCCGAGGGAGAGGGCTCCTCTCCGGAGGGCGAGACGGTGTGTGCTGCGCTCGCCCGCTACGAGGCCACACTGAGAGATGCCGTGTGTGAGATCCACGTGGACATGAGCGCCTTCAAGCAGGGTGTGGAGCGTCGTCTGGAGGAGGCGACGGCCCACCCCAGCGAGGGCCCCCTAGGCCGGGCTGTGGCGCAGCTGCAGCAGGAGAACCGGCAGCTCCGGAGCCAGTTGGAGGCCCTTACCCGACAGGTAGAGCTCCTCACTGGGACAGTGTGCGACAGAGGCGCCCTGAtgactaacaacaacaacaaccaccaccagCACCAGCTAGCATCCATCCAGGCCcagacacacagcagcagccagGAGAGGGCGagccccccctccacctcccctacCAGCCCTGCTGGTGGCCCCAGCATGGGAGCCCTGACCGGGTCAGCCTCGGGCTCAGCCTCCAGCCCCACTGCCGCCCGCTTCTCCAGCCGAGCTACCTTCGCTGTGTCCAGCAAGACTAACaGTATTGAACGTGAGGAGCCGATAGAGGTGGATCCGGACCTTGTATCCCCTGGACTGGAGAATGGACACTCTACTACCCCAGAAAACTCGACAGTGTCATATGGATTGAGCTCGCCAGCCAATAACAACGTCCCTCATGAAAGCACGGCCCCTGTTGCCATGCGGATGCCACACCTACCCATCACCGCCACAACCAAGACGGCTGACCCCTCAGTTATGAAGAGCGAATCTCCCGCCAGTCCCGTACGCTCTAAGCCCTCGCCTGTATCAGAGCATACTGCCAACAACCAGCCTCAAGCCATCCAAGAATCCCCAATTCAACCAGtgtcGTCTATGAAGACATGGACCCCCAGTCTCAGCCGAGGTCTGGGCTCTCCTCGACTGTCAGAAAAGTCCTTGTCCGCTCCCCCGAAGTCAGTGACTTACTCTGGCCTcatccaacacaacacagacgGGGTGGAAGATGTGGGCGGGGACCTGCCTTTTGGAAGGGGAGTGGAGCGGAGGCGGGAGCTGGTGAGGTCACAGACGTTGCCGCGCAACCTTGGAGCTCAGGCCCGCCGGTCCATCTTTGAAAGGCTGGATTCTGAAGCCAGCAGGCCCAAGCCCATGGACCCCAAGCCCAAGCTGAAGCGTTCTCAGAGCTTTGGTGTGTCCAGTGCCAGCAGCATCAAGCAGATTCTTCTGGAGTGGTGCCGCTCCAAAACCATAGGATACCAGAACATAGACATCCAGAACTTCTCGTCCAGTTGGAGCGACGGCATGGCCTTCTGTGCCCTGGTCCATTCCTTCTTCCCCACTGAGTTTGACTACAACGTGCTGACGCCTGCCGACCGCAAGCACAACTTTGAGCTGGCCTTCGGAACAGCGGAGGAGAAGGCGGGCTGTGACCGGCTCATCGAGGTGGACGATATGATGGTGATGGGGCGCAAGCCTGACCCCATGTGTGTCTTTACCTATGTCCAGTCCATGTACAACCACCTGCGCAAGTTTGAGTGATGAACGATGACCTGGCAGCTACTCGACGACATCaccgccccaccaccaccatcactctcTTGCTTTCAGGGACAGCAGCAATGCACACTGAGAGAACCACACTTCCCCCTGCTGGAATGGACAGAGTATTACAAGTATTTCTTCAGTTTGAGAGATGTTTCACTCTGCTATGTTGAGTGCTCACAGCTATTCACAAATAGAACAGGCTATATTATTCCTGTTTGTGTATGAGTGGCTGGGTTTTTATTCCCTGAAAGTCTGTGTTACatttcagagagaggggaaggatctTTCTCCCTTTATTTGGTGACTGACCATTTTTAAGGCTTATATTGGCACAGTTGCTGTTTGAGAGAATGGGAGAATCAACTCTTTGCTGAGGAGAAAAAGTAGTCCCATTGAAGAAGCTGCAAAAGGTCttgaacagtaggcctataaGACTGGACAAAGGACGAGGGTCCTGAGGATTGACACAAATCAGTCTAAATAGGATGCTATCATCATTTGGTTCCTTCTAGATATGTATTTGTTCAGGCttccttgactttattgtcccacTGTGGTTTCTCAGACCCAACTGTGTCTACAAAAGGCCTTGCATTGCAGCACAAACTAAAAGCTATTCCAAAGTTAGCTTTTTCATCAGCTGAACAGAGGAACCCAAGTACACTCACTATAAAGTTGAATGGTTTGCTATTTAAAGAGCTAGAACTGCAAAGATGAACTGCACATATGCATCAACTCGGTGCAAAGGTAAAATGGTCTATGTTCTTATAGTGTTCTTGTTATGGttgtgattttatttgattttcatagacaaaaaaaaagacaaaaataaATCCTAAATAAATTGTCACTTGTTTCACACA

Function

NR:

description
smoothelin-like protein 2 isoform X2

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0003677 DNA binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965432.1 False 2809 mRNA 0.53 10 10193680 10213605
XM_036965433.1 True 2806 mRNA 0.53 10 10193680 10213605

Neighbor

gene id symbol gene type direction distance location
LOC110507516 LOC106580779 coding upstream 28965 10156632 ~ 10164715 (+)
LOC110507514 LOC106580778 coding upstream 43029 10146557 ~ 10150651 (+)
LOC110507512 LOC106580776 coding upstream 68255 10121941 ~ 10125425 (+)
usp2a LOC106580775 coding upstream 72155 10079901 ~ 10121525 (+)
LOC110507511 LOC106580774 coding upstream 114286 10057431 ~ 10079394 (+)
sebox LOC106580896 coding downstream 3915 10217520 ~ 10218686 (+)
LOC110507518 LOC106562846 coding downstream 17100 10230705 ~ 10233860 (+)
LOC110507519 LOC106580781 coding downstream 22764 10236369 ~ 10250613 (+)
LOC110507067 LOC106580782 coding downstream 38284 10251889 ~ 10282483 (+)
LOC110507520 LOC106580783 coding downstream 73588 10287193 ~ 10293719 (+)
G2050109 NA non-coding upstream 1438 10191987 ~ 10192242 (+)
G2050017 NA non-coding upstream 170935 10019610 ~ 10022745 (+)
G2050046 NA non-coding upstream 185784 10007697 ~ 10007896 (+)
G2050002 NA non-coding upstream 220827 9972597 ~ 9972853 (+)
G2050122 NA non-coding downstream 1039 10214644 ~ 10214948 (+)
G2050123 NA non-coding downstream 5648 10219253 ~ 10219615 (+)
G2050164 NA non-coding downstream 98483 10312088 ~ 10371018 (+)
G2050178 NA non-coding downstream 162504 10376109 ~ 10377333 (+)
G2050200 xaf1 non-coding downstream 247265 10460870 ~ 10462018 (+)
G2049657 NA other upstream 405565 9787806 ~ 9788115 (+)
G2049339 LOC100380674 other upstream 785109 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 1469377 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2935450 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2942105 7245806 ~ 7251575 (+)
LOC110507523 LOC106580787 other downstream 175396 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 192768 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 362105 10494894 ~ 10583085 (+)
LOC110507540 git1 other downstream 561482 10755190 ~ 10778403 (+)

Expression


Co-expression Network