sebox (LOC106580896)


Basic Information

Item Value
gene id sebox
gene name LOC106580896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10217520 ~ 10218686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586944.2
ATCTACGAACCATATGATTGGCCCAATTTTATTACTTCGATTTTCAAttctcaaaaatgttgtttttgttgttttttagaCTTGAGGAATGACAATGGACTTTCATCACCCGAACCTGAGAGAAGCGCGTTTACAGAGGGCCAAAGGAAGCGCAAAAGAACCATATTCAGTCGCGCACAATTGTCTGAGTTGGAACAAGCTTTCGCTCTGACGCCGTACCCAGACATCACTCTCCGTGAACGTTTGGCCGCACAAACACATCTACCTGAAAGCAAGATACAGGTGTGGTTCCAAAACAGACGGGCAAGAAGTATCAAGAGTGGAAGACTCACCAAATCTACCAATACAACTTTTGGAAGAGGAGGTGAAAAATGCCTATCTCGCCCAATAGTCCCCTCCCCTGGTCCCTCCTTCACCCCAACCACAATGGGGGAAATGTTCCGACCAGACCAGATTCAGTGTGATGATGTTCAGCAGTTCTACTCCGACTGGATCCGTCTCTACAGCAACCCTGTGTCTCATCAGCTTACACCCGTCTCCCCAAACCTGGCAGAATCCCTACTGTGGGAGGAAGACTCTCACCTGGGATCTCTTGCTACTACCACGGCACCCGTTGGAAGCCAAGCACACTCCTCACGGCCATACCGGGATGGGTTCAACCAGTCCTGCGTGGGCACCTCAGGGTATAGGAACTTTAAGTCACAGACTCTAGCTGTCTCACAGGCAAGATATGGTCATCAAACCTCAGTGGACCAGGTTGTCCCCTCCCATCCGCAGCAGATGTACTGGGATGTGACTCAAGGAGAGGGTCATCATCCTCAGGTGGGCCCCCAGACCTCCATCGGATACATCTCAGACCTGATCTATAATGCTGCTATTGTCACCAACTTCCTGGAGTTCTAATTTCCTGCCCCTGCTTACCTATTGTATAGCCTGGTGGTCCCAGCTCTGGTTGTGCTGTCTTGCCAGGTATTGGCAAAACAACACAAACATATTTGGGACCACTAGCCTATACCGCTTGcccaatacagtgccttcagaaagtattcacacaccttgac

Function

NR:

description
homeobox protein SEBOX-like, partial

GO: NA

KEGG:

id description
K24904 SEBOX; homeobox protein SEBOX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586944.2 True 1061 mRNA 0.49 2 10217520 10218686

Neighbor

gene id symbol gene type direction distance location
LOC110507517 LOC106580780 coding upstream 3915 10193680 ~ 10213605 (+)
LOC110507516 LOC106580779 coding upstream 52805 10156632 ~ 10164715 (+)
LOC110507514 LOC106580778 coding upstream 66869 10146557 ~ 10150651 (+)
LOC110507512 LOC106580776 coding upstream 92095 10121941 ~ 10125425 (+)
usp2a LOC106580775 coding upstream 95995 10079901 ~ 10121525 (+)
LOC110507518 LOC106562846 coding downstream 12019 10230705 ~ 10233860 (+)
LOC110507519 LOC106580781 coding downstream 17683 10236369 ~ 10250613 (+)
LOC110507067 LOC106580782 coding downstream 33203 10251889 ~ 10282483 (+)
LOC110507520 LOC106580783 coding downstream 68507 10287193 ~ 10293719 (+)
LOC100136196 LOC100136196 coding downstream 75293 10293979 ~ 10299855 (+)
G2050122 NA non-coding upstream 2572 10214644 ~ 10214948 (+)
G2050109 NA non-coding upstream 25278 10191987 ~ 10192242 (+)
LOC110507511 LOC106580774 non-coding upstream 138710 10057431 ~ 10079394 (+)
G2050017 NA non-coding upstream 194775 10019610 ~ 10022745 (+)
G2050046 NA non-coding upstream 209624 10007697 ~ 10007896 (+)
G2050123 NA non-coding downstream 567 10219253 ~ 10219615 (+)
G2050164 NA non-coding downstream 93402 10312088 ~ 10371018 (+)
G2050178 NA non-coding downstream 157423 10376109 ~ 10377333 (+)
G2050200 xaf1 non-coding downstream 242184 10460870 ~ 10462018 (+)
G2050234 NA non-coding downstream 296668 10515354 ~ 10515598 (+)
G2049657 NA other upstream 429405 9787806 ~ 9788115 (+)
G2049339 LOC100380674 other upstream 808949 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 1493217 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2959290 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2965945 7245806 ~ 7251575 (+)
LOC110507523 LOC106580787 other downstream 170315 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 187687 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 357024 10494894 ~ 10583085 (+)
LOC110507540 git1 other downstream 556401 10755190 ~ 10778403 (+)

Expression


Co-expression Network