LOC110507518 (LOC106562846)


Basic Information

Item Value
gene id LOC110507518
gene name LOC106562846
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10230705 ~ 10233860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040054.1
gacttgccacGTTAAATAAAGGATAACAAATAACGTGAATGAACAACAGAGACAAAATACAATATGGAAATGACTTAATGGGGTATGGCCTCATCTCCGATGAATGCTAATGACATATGCTGGTACTGGGAAAGTCTGGGAAAGTCAGACTTCCTGATTGAACTTTCGTAAACTACATTAGAATTCACAGAGGTTGCCTGCCCAATACTTAGCCTGCTTTCAGTCAAACCAAGCACTGGCAGACACTAGATAACTAGCTAgattaaaaaacaacatttaactTCATAATAGCCCTTATGCACATTCCATGATCGAACGTTCTAAACACACGGTTTGGCAATTTCCGGTCAGTCTAGTTGTTATCGACGATATAACGTTACTACCACTATGTCGCAGTTTTTTACTAGGTGTCTTCAGGACTTGCCTCAAATTAATATTAATGATGTACATCGAATTGTTAAATCAGCCTCCGAGACTCCAGCTAGCAAGAATGAAAAGGGGTTCAATATGTATATATGAAGCTACATAGACAACTATGAAGTATCTAACAAAGATACATTGACAGGGGAGATCACCGTGAGGGCTGCCTGTCACAGGTCCATGAGGAAGAGTGAAAAGCCGCACAGCATGAGAGTAGGGAAAGATGGTGTTAAAGCACTCCGTACCAGTGATAGTGGTCCAAAGCCACTGCTCCTGTGTTGCAGGAAGTGCTCTGTGCAATCATCTGGTGGCCCTTCTTTACCAGACAGCACACTACTCTCAACTAAACATTCCTGCTGCACCACCAGTTCACAGCTGCACAGACACAGAACAGCATTGGCACAAGCCAAGAACACTTGGTGTGAAGCCAGGTCCGGTTGGTGGGATAGAGTTCCGTAAACCTATTAACTCGTGTGCTGATGGAATAAGAAGTTCTCTCTACAAAGCACTCAATGGATACATGCCTGACATGGACTTTCTCTGCGTCTCAGAAACGTATGCCAacttttctccacttcctgcccCTCTTgtgacaacaatggaaatgtcagCTGACGTGCCCCTGGTTGAGTCCTCCTTTGGGCCAGTGCAATGCGTCAGTGTTCTGTCCTATCAGCTTCCACAGCCAAAGACCCATGAAATTGTGAAGATTGCCGATGCCCCTTCCCCACCAATACTTCCATTAGATGGCTACAGGCTTCAGGCTTCCCAGTGTGCTTACGTCCTTAGCCATCAGGAGCAGTTCCACCTCAAGGCATTAGAGACAACCTACGAGATGTCACAAAGTCAAGGTTGCTACAAGGGAGCAGAGCAGCAGCCCGGAATGGCATCAGCTCAGGAAAATGAGAATAACATCCT
>XM_021587557.2
AGAGACAAAATACAATATGGAAATGACTTAATGGGGTATGGCCTCATCTCCGATGAATGCTAATGACATATGCTGGTACTGGGAAAGTCTGGGAAAGTCAGACTTCCTGATTGAACTTTCGTAAACTACATTAGAATTCACAGAGGTTGCCTGCCCAATACTTAGCCTGCTTTCAGTCAAACCAAGCACTGGCAGACACTAGATAACTAGCTAgattaaaaaacaacatttaactTCATAATAGCCCTTATGCACATTCCATGATCGAACGTTCTAAACACACGGTTTGGCAATTTCCGGTCAGTCTAGTTGTTATCGACGATATAACGTTACTACCACTATGTCGCAGTTTTTTACTAGGTGTCTTCAGGACTTGCCTCAAATTAATATTAATGATGTACATCGAATTGTTAAATCAGCCTCCGAGACTCCAGCTAGCAAGAATGAAAAGGGGTTCAATATGTATATATGAAGCTACATAGACAACTATGAAGATGGTGTTAAAGCACTCCGTACCAGTGATAGTGGTCCAAAGCCACTGCTCCTGTGTTGCAGGAAGTGCTCTGTGCAATCATCTGGTGGCCCTTCTTTACCAGACAGCACACTACTCTCAACTAAACATTCCTGCTGCACCACCAGTTCACAGCTGCACAGACACAGAACAGCATTGGCACAAGCCAAGAACACTTGGTGTGAAGCCAGGTCCGGTTGGTGGGATAGAGTTCCGTAAACCTATTAACTCGTGTGCTGATGGAATAAGAAGTTCTCTCTACAAAGCACTCAATGGATACATGCCTGACATGGACTTTCTCTGCGTCTCAGAAACGTATGCCAacttttctccacttcctgcccCTCTTgtgacaacaatggaaatgtcagCTGACGTGCCCCTGGTTGAGTCCTCCTTTGGGCCAGTGCAATGCGTCAGTGTTCTGTCCTATCAGCTTCCACAGCCAAAGACCCATGAAATTGTGAAGATTGCCGATGCCCCTTCCCCACCAATACTTCCATTAGATGGCTACAGGCTTCAGGCTTCCCAGTGTGCTTACGTCCTTAGCCATCAGGAGCAGTTCCACCTCAAGGCATTAGAGACAACCTACGAGATGTCACAAAGTCAAGGTTGCTACAAGGGAGCAGAGCAGCAGCCCGGAATGGCATCAGCTCAGGAAAATGAGAATAACATCCTCTCGTTTCCAAGAGGTTTGCCATGTCTGGGGAGAGACCTCAGCTGACCACCTAGCTGAGCGGATGTTCAAGGGATCTGGTATGTGGACCATGGAGATGAAGAGGGGGCTAGCCATGGAGCCAGTGACTGTACAGGAGTACTGCACACTGAAGAATGTTAACTTATTTCCGTGTGGCTACGTAGTGCACCCAGGTGCTCCGTGGTTAGGATCCTCTCCAGGTGGAATCATATTTGATCCCAGTGTGAGACCACACTTTGGACTCTTAGAGGTCAAGTTATGTTGACTGCCCTTACCTAAAGATACAGAATGGAGAGCTGAAGTTGAAGAGAACTCATGCTTACTACTGGCAGGTGCAAGGTCAAATCCTTCTCACAGGTTGTAGCTGGTGTGACTTTGTCATCTGTGCACAGGAGGACATCCTAGTTGAAAGGATATATAAAGATCTACAGGTTTAAAAAACTATGAGAGAAGGTTGACCACTTATTTTTACCACTACTTGCAGAAGTGTCTCTCGcacctgaatggatcccctgcatGGGTGCCAAGTTTAGTGGTTTTATGAAAAATAAGTATTGATGTTCTTGTGAAGAAATCTACAGTAGaatagatttgtttaaaaaaatgtatttcagcaAATGTTCAACAGTTCAGTTAATCAATTACACATCTCTAACATTGTATTCAATCTTGCATTCTGGCTGTACTGTGTTTACTTCATTTCTTTCCCCCACCCCTGTTACTCATTGCCTAATTAAAGCCAATTCAAGCTCcacacaaactgatattcactacAACACAAATGATTGATACATGTCGTAgataaacaaattattattttgctGCTAGCAAATAAACACATGTACATTTACACTGGCTTGGCCCATGCTCTGGACCGGATCAGAGACGGCACAGTCCATAGGCAGCGCACCTTGTTCT
>XM_036965511.1
TTATGCTCGCTAGCTATATTTTCTAGCTAAAAATAATTGTTATTCATGTCTTCTACACAGTATCTAACAAAGATACATTGACAGGGGAGATCACCGTGAGGGCTGCCTGTCACAGGTCCATGAGGAAGAGTGAAAAGCCGCACAGCATGAGAGTAGGGAAAGATGGTGTTAAAGCACTCCGTACCAGTGATAGTGGTCCAAAGCCACTGCTCCTGTGTTGCAGGAAGTGCTCTGTGCAATCATCTGGTGGCCCTTCTTTACCAGACAGCACACTACTCTCAACTAAACATTCCTGCTGCACCACCAGTTCACAGCTGCACAGACACAGAACAGCATTGGCACAAGCCAAGAACACTTGGTGTGAAGCCAGGTCCGGTTGGTGGGATAGAGTTCCGTAAACCTATTAACTCGTGTGCTGATGGAATAAGAAGTTCTCTCTACAAAGCACTCAATGGATACATGCCTGACATGGACTTTCTCTGCGTCTCAGAAACGTATGCCAacttttctccacttcctgcccCTCTTgtgacaacaatggaaatgtcagCTGACGTGCCCCTGGTTGAGTCCTCCTTTGGGCCAGTGCAATGCGTCAGTGTTCTGTCCTATCAGCTTCCACAGCCAAAGACCCATGAAATTGTGAAGATTGCCGATGCCCCTTCCCCACCAATACTTCCATTAGATGGCTACAGGCTTCAGGCTTCCCAGTGTGCTTACGTCCTTAGCCATCAGGAGCAGTTCCACCTCAAGGCATTAGAGACAACCTACGAGATGTCACAAAGTCAAGGTTGCTACAAGGGAGCAGAGCAGCAGCCCGGAATGGCATCAGCTCAGGAAAATGAGAATAACATCCTCTCGTTTCCAAGAGGTTTGCCATGTCTGGGGAGAGACCTCAGCTGACCACCTAGCTGAGCGGATGTTCAAGGGATCTGGTATGTGGACCATGGAGATGAAGAGGGGGCTAGCCATGGAGCCAGTGACTGTACAGGAGTACTGCACACTGAAGAATGTTAACTTATTTCCGTGTGGCTACGTAGTGCACCCAGGTGCTCCGTGGTTAGGATCCTCTCCAGGTGGAATCATATTTGATCCCAGTGTGAGACCACACTTTGGACTCTTAGAGGTCAAGTTATGTTGACTGCCCTTACCTAAAGATACAGAATGGAGAGCTGAAGTTGAAGAGAACTCATGCTTACTACTGGCAGGTGCAAGGTCAAATCCTTCTCACAGGTTGTAGCTGGTGTGACTTTGTCATCTGTGCACAGGAGGACATCCTAGTTGAAAGGATATATAAAGATCTACAGGTTTAAAAAACTATGAGAGAAGGTTGACCACTTATTTTTACCACTACTTGCAGAAGTGTCTCTCGcacctgaatggatcccctgcatGGGTGCCAAGTTTAGTGGTTTTATGAAAAATAAGTATTGATGTTCTTGTGAAGAAATCTACAGTAGaatagatttgtttaaaaaaatgtatttcagcaAATGTTCAACAGTTCAGTTAATCAATTACACATCTCTAACATTGTATTCAATCTTGCATTCTGGCTGTACTGTGTTTACTTCATTTCTTTCCCCCACCCCTGTTACTCATTGCCTAATTAAAGCCAATTCAAGCTCcacacaaactgatattcactacAACACAAATGATTGATACATGTCGTAgataaacaaattattattttgctGCTAGCAAATAAACACATGTACATTTACACTGGCTTGGCCCATGCTCTGGACCGGATCAGAGACGGCACAGTCCATAGGCAGCGCACCTTGTTCT
>XM_036965510.1
TTTATTGTTATTTATGGACTGCATCATTCTTGTTTCTCACTTCAGTCTTTCATCACACTTATCTTCACAGATGGTGTTAAAGCACTCCGTACCAGTGATAGTGGTCCAAAGCCACTGCTCCTGTGTTGCAGGAAGTGCTCTGTGCAATCATCTGGTGGCCCTTCTTTACCAGACAGCACACTACTCTCAACTAAACATTCCTGCTGCACCACCAGTTCACAGCTGCACAGACACAGAACAGCATTGGCACAAGCCAAGAACACTTGGTGTGAAGCCAGGTCCGGTTGGTGGGATAGAGTTCCGTAAACCTATTAACTCGTGTGCTGATGGAATAAGAAGTTCTCTCTACAAAGCACTCAATGGATACATGCCTGACATGGACTTTCTCTGCGTCTCAGAAACGTATGCCAacttttctccacttcctgcccCTCTTgtgacaacaatggaaatgtcagCTGACGTGCCCCTGGTTGAGTCCTCCTTTGGGCCAGTGCAATGCGTCAGTGTTCTGTCCTATCAGCTTCCACAGCCAAAGACCCATGAAATTGTGAAGATTGCCGATGCCCCTTCCCCACCAATACTTCCATTAGATGGCTACAGGCTTCAGGCTTCCCAGTGTGCTTACGTCCTTAGCCATCAGGAGCAGTTCCACCTCAAGGCATTAGAGACAACCTACGAGATGTCACAAAGTCAAGGTTGCTACAAGGGAGCAGAGCAGCAGCCCGGAATGGCATCAGCTCAGGAAAATGAGAATAACATCCTCTCGTTTCCAAGAGGTTTGCCATGTCTGGGGAGAGACCTCAGCTGACCACCTAGCTGAGCGGATGTTCAAGGGATCTGGTATGTGGACCATGGAGATGAAGAGGGGGCTAGCCATGGAGCCAGTGACTGTACAGGAGTACTGCACACTGAAGAATGTTAACTTATTTCCGTGTGGCTACGTAGTGCACCCAGGTGCTCCGTGGTTAGGATCCTCTCCAGGTGGAATCATATTTGATCCCAGTGTGAGACCACACTTTGGACTCTTAGAGGTCAAGTTATGTTGACTGCCCTTACCTAAAGATACAGAATGGAGAGCTGAAGTTGAAGAGAACTCATGCTTACTACTGGCAGGTGCAAGGTCAAATCCTTCTCACAGGTTGTAGCTGGTGTGACTTTGTCATCTGTGCACAGGAGGACATCCTAGTTGAAAGGATATATAAAGATCTACAGGTTTAAAAAACTATGAGAGAAGGTTGACCACTTATTTTTACCACTACTTGCAGAAGTGTCTCTCGcacctgaatggatcccctgcatGGGTGCCAAGTTTAGTGGTTTTATGAAAAATAAGTATTGATGTTCTTGTGAAGAAATCTACAGTAGaatagatttgtttaaaaaaatgtatttcagcaAATGTTCAACAGTTCAGTTAATCAATTACACATCTCTAACATTGTATTCAATCTTGCATTCTGGCTGTACTGTGTTTACTTCATTTCTTTCCCCCACCCCTGTTACTCATTGCCTAATTAAAGCCAATTCAAGCTCcacacaaactgatattcactacAACACAAATGATTGATACATGTCGTAgataaacaaattattattttgctGCTAGCAAATAAACACATGTACATTTACACTGGCTTGGCCCATGCTCTGGACCGGATCAGAGACGGCACAGTCCATAGGCAGCGCACCTTGTTCT

Function

NR:

description
uncharacterized protein LOC110493924 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040054.1 False 1338 mRNA 0.45 5 10230705 10232923
XM_021587557.2 False 2126 mRNA 0.44 4 10230752 10233860
XM_036965511.1 False 1794 mRNA 0.45 4 10231401 10233860
XM_036965510.1 True 1702 mRNA 0.45 3 10231823 10233860

Neighbor

gene id symbol gene type direction distance location
sebox LOC106580896 coding upstream 12019 10217520 ~ 10218686 (+)
LOC110507517 LOC106580780 coding upstream 17100 10193680 ~ 10213605 (+)
LOC110507516 LOC106580779 coding upstream 65990 10156632 ~ 10164715 (+)
LOC110507514 LOC106580778 coding upstream 80054 10146557 ~ 10150651 (+)
LOC110507512 LOC106580776 coding upstream 105280 10121941 ~ 10125425 (+)
LOC110507519 LOC106580781 coding downstream 2509 10236369 ~ 10250613 (+)
LOC110507067 LOC106580782 coding downstream 18029 10251889 ~ 10282483 (+)
LOC110507520 LOC106580783 coding downstream 53333 10287193 ~ 10293719 (+)
LOC100136196 LOC100136196 coding downstream 60119 10293979 ~ 10299855 (+)
LOC110507521 LOC106580786 coding downstream 71965 10305825 ~ 10384673 (+)
G2050123 NA non-coding upstream 11090 10219253 ~ 10219615 (+)
G2050122 NA non-coding upstream 15757 10214644 ~ 10214948 (+)
G2050109 NA non-coding upstream 38463 10191987 ~ 10192242 (+)
LOC110507511 LOC106580774 non-coding upstream 151895 10057431 ~ 10079394 (+)
G2050017 NA non-coding upstream 207960 10019610 ~ 10022745 (+)
G2050164 NA non-coding downstream 78228 10312088 ~ 10371018 (+)
G2050178 NA non-coding downstream 142249 10376109 ~ 10377333 (+)
G2050200 xaf1 non-coding downstream 227010 10460870 ~ 10462018 (+)
G2050234 NA non-coding downstream 281494 10515354 ~ 10515598 (+)
G2050212 NA non-coding downstream 315187 10549047 ~ 10549304 (+)
G2049657 NA other upstream 442590 9787806 ~ 9788115 (+)
G2049339 LOC100380674 other upstream 822134 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 1506402 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2972475 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2979130 7245806 ~ 7251575 (+)
LOC110507523 LOC106580787 other downstream 155141 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 other downstream 172513 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 341850 10494894 ~ 10583085 (+)
LOC110507540 git1 other downstream 541227 10755190 ~ 10778403 (+)

Expression


Co-expression Network