LOC110507519 (LOC106580781)


Basic Information

Item Value
gene id LOC110507519
gene name LOC106580781
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10236369 ~ 10250613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587561.2
CTAGTTTTCCGTTTTCCACTCCCCTCTAAGAACACCCCTAGACAGTCTTGAGAAATTTCTCTTTGATAGTAAGGTACTTTATTGTTATCCAGAAACGATTTGATactgagataaaaacggctgcattgaaCCTTTAAATCAACTTTGAAATTCGCACGCTTTTATACACGTGAGCCTCGGCGTGCTTGTGCAGAAGTAGGAAAGATGGCTGCTTGTGCAATACGACGAGGCTTCCTGACTGTTGTTAGTAAATACAACAAGAAACAGACACATAGAATATTGGGTGTTATTGAAGGGAGTAGTGGACTTGAGGTGAAGAGGCCCCGGTTACCGTGTTTAGCATGTGGATTGCCCAACATTCAGCAGACGAGGTTCATGTCGTCACGGAACAGGCCGGAGGGGAAGGTTCTGGAGACGGTGGGAGTGTTTGAGGCGCTGAAGCAGCACGGCAAATATGAAACAGGCCAGCTCTTCCTTCATAGTGTGTTTGGCTACAGAGGGATCGTGTTGTTCCCCTGGCACGCCCGTATCTATGACCGGGATATCATTCCTCCCATCTCTGACGGCAAGCCAGAGCCTCCTGGTTCTCACGGGTCAAAAGAGGTGAAGGGGAGAACTCATACCTACTACCAGGTCCTCATCGACACGCGGGACTGCCCTCACATATCTCAGAGGTCTCAGACCGAAGCAGTGACGTTCCTGGCGAACCATGACGACAGCAGAGCCCTCTATGCCATCCCAGgtctggaCTATGTGAGTCATGAAGACATCCTGCCCTACAACTCCACAGAGCAGGTCCCCATCCAGCACGAGCTGTTTGAGCGCTTCCTCATGTTCAGCCCTGACAAAACCACCCCAGCTCCCCCGTTCAGTGCGAGGGACACTCTGAAGGCATGGCAGGAGAAGAATCATCCCTGGCTGGAGCTGTCCGACGTGCACAGAGAGACGACGGAGAACATCCGGGTCACTGTCATCCCCTTCTACATGGGCATGAGGGATGCTCAAAATTCTCATGTGTATTGGTGGCGGTACTGCATCCGCCTGGAGAACATGGGCAGTGAGGTGGTGCAACTGAGGGAGAGACACTGGAGGATCTTCAGCCTGTCAGGCACGCTGGAGACGGTCCGGGGACGGGGGGTCGTAGGAACCAGTGTTGTCCAAAGAGCAGCCAGCCTTCCAGTACAGCAGCCATGTTTCCCTTCAAGCACCCAGTGGACACATGTGGGGAACCTTCCGCATCGAGAGGACGGACGGCTCCCACTTTGATGTGCGCATTCCCCCGTTTTCCCTGGAGAGCAACAAGGATGACAAGGCACCCCCGGCTGGCTACACCTTCTGAGGCAACGCAGCAGCAGGGGCATGTCCCTCAGCGCAGTCGAACAGCCAAGCCATCCTTAGGAACGGATCAACCCTTCCTCTGCTACTTCTTCCTCATTGATATTTTAAGAAACTGATTTATTTGAGCACattgaaatgagatgttcaatgaaaAGGGACAAAAATTGGCCTCCCAACATTTGTAGCTAATGAGAACTTTTGCTTTTTAGTGGGAAGGACAAGCGTTCGGTCACAGAGGTTGTTGCTTGAGATCGTTCTGCATAGGCAGAATGGCACGGTGAGCACTGATGGTATTTGCATTTATTATTATGAGTGGGAATGAATTATTCCAATGGTTTCTCTCAGCCATAATCGCTTGACCCAGAGGTAGACGTCTAAAACCAGCCTCCCTTGGTGTATTTTATTGGTGTTTCTAAATGGTTCAAATCAGCAGACCTGGTGGGAAATCATCGAAAGGACTTTACTAAAGCCAAATAGAACGTGTCCAATAGGAGCCCTACTCTTTTAAGAGACCTCAGTCAAGTCTAGACCTCCGTGTTGCTCTGTATAGTATTATGCAAATGACTGTTGTGCCTGTTTGGCTTGTCTGTCTCTTTGAGCCTCCCTGATGGGGCCTGTTTGGCTTGTCTGTCACTTTGAGCCTCCCTGATGGGGCCTGTGGTGAAACATGTAGAAAAGGGAAAGGGAACCTTGGttatgtctcaaatggcaccctattccctatgaagtgcactatatagggaataggttgctgtTTGGGATGTTACCATTGAACGGAACAAGAAAGTGGAATACAGGGGGAGTCAGTGAGCTAAGGATGTCGTAGTGACCCCCATTGATGTTACCAACCTGTAGGTTTTGTCTGATATGAGGGCCGGGTTCAGGAGAGTGATCTGTTTCAGGTATGAATATCATGCATAGAGCAGACATGGTTCCTCATTCGACATGACGGCGAATCATGTCTGTTCCACACAATGTATTTAGATCTGAACATTTCATGTTGTTATTTGAGCGTGGTGTGTGTTGGTGAGGGAGGTGTCTGGGAGACGGACCGGGTGCTATGCTGCTCGAGTCTGTCGTGTCCAACCCTTTGAGTCAGTTCTGTGGGTTGAAGTCTGTTTGATTTTTGCCTTGTTTAGGGAAGAAACTTTTTTTGATAAGTGATTTGAAATGACTGTGTAATGGTTGAATGATGTTCCGTGACAAAGTTGTAAAGAcaaataaatgtacattttaaagA
>XM_021587559.2
TTCCGTTTTCCACTCCCCTCTAAGAACACCCCTAGACAGTCTTGAGAAATTTCTCTTTGATAGTAAGGTACTTTATTGTTATCCAGAAACGATTTGATactgagataaaaacggctgcattgaaCCTTTAAATCAACTTTGAAATTCGCACGCTTTTATACACGTGAGCCTCGGCGTGCTTGTGCAGAAGTAGGAAAGATGGCTGCTTGTGCAATACGACGAGGCTTCCTGACTGTTGTTAGTAAATACAACAAGAAACAGACACATAGAATATTGGGTGTTATTGAAGGGAGTAGTGGACTTGAGGTGAAGAGGCCCCGGTTACCGTGTTTAGCATGTGGATTGCCCAACATTCAGCAGACGAGGTTCATGTCGTCACGGAACAGGCCGGAGGGGAAGGTTCTGGAGACGGTGGGAGTGTTTGAGGCGCTGAAGCAGCACGGCAAATATGAAACAGGCCAGCTCTTCCTTCATAGTGTGTTTGGCTACAGAGGGATCGTGTTGTTCCCCTGGCACGCCCGTATCTATGACCGGGATATCATTCCTCCCATCTCTGACGGCAAGCCAGAGCCTCCTGGTTCTCACGGGTCAAAAGAGGTGAAGGGGAGAACTCATACCTACTACCAGGTCCTCATCGACACGCGGGACTGCCCTCACATATCTCAGAGGTCTCAGACCGAAGCAGTGACGTTCCTGGCGAACCATGACGACAGCAGAGCCCTCTATGCCATCCCAGgtctggaCTATGTGAGTCATGAAGACATCCTGCCCTACAACTCCACAGAGCAGGTCCCCATCCAGCACGAGCTGTTTGAGCGCTTCCTCATGTTCAGCCCTGACAAAACCACCCCAGCTCCCCCGTTCAGTGCGAGGGACACTCTGAAGGCATGGCAGGAGAAGAATCATCCCTGGCTGGAGCTGTCCGACGTGCACAGAGAGACGACGGAGAACATCCGGGTCACTGTCATCCCCTTCTACATGGGCATGAGGGATGCTCAAAATTCTCATGTGTATTGGTGGCGGTACTGCATCCGCCTGGAGAACATGGGCAGTGAGGTGGTGCAACTGAGGGAGAGACACTGGAGGATCTTCAGCCTGTCAGGCACGCTGGAGACGGTCCGGGGACGGGGGGTCGTAGGTCGGGAACCAGTGTTGTCCAAAGAGCAGCCAGCCTTCCAGTACAGCAGCCATGTTTCCCTTCAAGCACCCAGTGGACACATGTGGGGAACCTTCCGCATCGAGAGGACGGACGGCTCCCACTTTGATGTGCGCATTCCCCCGTTTTCCCTGGAGAGCAACAAGGATGACAAGGCACCCCCGGCTGGCTACACCTTCTGAGGCAACGCAGCAGCAGGGGCATGTCCCTCAGCGCAGTCGAACAGCCAAGCCATCCTTAGGAACGGATCAACCCTTCCTCTGCTACTTCTTCCTCATTGATATTTTAAGAAACTGATTTATTTGAGCACattgaaatgagatgttcaatgaaaAGGGACAAAAATTGGCCTCCCAACATTTGTAGCTAATGAGAACTTTTGCTTTTTAGTGGGAAGGACAAGCGTTCGGTCACAGAGGTTGTTGCTTGAGATCGTTCTGCATAGGCAGAATGGCACGGTGAGCACTGATGGTATTTGCATTTATTATTATGAGTGGGAATGAATTATTCCAATGGTTTCTCTCAGCCATAATCGCTTGACCCAGAGGTAGACGTCTAAAACCAGCCTCCCTTGGTGTATTTTATTGGTGTTTCTAAATGGTTCAAATCAGCAGACCTGGTGGGAAATCATCGAAAGGACTTTACTAAAGCCAAATAGAACGTGTCCAATAGGAGCCCTACTCTTTTAAGAGACCTCAGTCAAGTCTAGACCTCCGTGTTGCTCTGTATAGTATTATGCAAATGACTGTTGTGCCTGTTTGGCTTGTCTGTCTCTTTGAGCCTCCCTGATGGGGCCTGTTTGGCTTGTCTGTCACTTTGAGCCTCCCTGATGGGGCCTGTGGTGAAACATGTAGAAAAGGGAAAGGGAACCTTGGttatgtctcaaatggcaccctattccctatgaagtgcactatatagggaataggttgctgtTTGGGATGTTACCATTGAACGGAACAAGAAAGTGGAATACAGGGGGAGTCAGTGAGCTAAGGATGTCGTAGTGACCCCCATTGATGTTACCAACCTGTAGGTTTTGTCTGATATGAGGGCCGGGTTCAGGAGAGTGATCTGTTTCAGGTATGAATATCATGCATAGAGCAGACATGGTTCCTCATTCGACATGACGGCGAATCATGTCTGTTCCACACAATGTATTTAGATCTGAACATTTCATGTTGTTATTTGAGCGTGGTGTGTGTTGGTGAGGGAGGTGTCTGGGAGACGGACCGGGTGCTATGCTGCTCGAGTCTGTCGTGTCCAACCCTTTGAGTCAGTTCTGTGGGTTGAAGTCTGTTTGATTTTTGCCTTGTTTAGGGAAGAAACTTTTTTTGATAAGTGATTTGAAATGACTGTGTAATGGTTGAATGATGTTCCGTGACAAAGTTGTAAAGAcaaataaatgtacattttaaagA
>XM_021587560.2
CGTTTTCCACTCCCCTCTAAGAACACCCCTAGACAGTCTTGAGAAATTTCTCTTTGATAGTAAGGTACTTTATTGTTATCCAGAAACGATTTGATactgagataaaaacggctgcattgaaCCTTTAAATCAACTTTGAAATTCGCACGCTTTTATACACGTGAGCCTCGGCGTGCTTGTGCAGAAGTAGGAAAGATGGCTGCTTGTGCAATACGACGAGGCTTCCTGACTGTTGTTAGTAAATACAACAAGAAACAGACACATAGAATATTGGGTGTTATTGAAGGGAGTAGTGGACTTGAGGTGAAGAGGCCCCGGTTACCGTGTTTAGCATGTGGATTGCCCAACATTCAGCAGACGAGGTTCATGTCGTCACGGCCGGAGGGGAAGGTTCTGGAGACGGTGGGAGTGTTTGAGGCGCTGAAGCAGCACGGCAAATATGAAACAGGCCAGCTCTTCCTTCATAGTGTGTTTGGCTACAGAGGGATCGTGTTGTTCCCCTGGCACGCCCGTATCTATGACCGGGATATCATTCCTCCCATCTCTGACGGCAAGCCAGAGCCTCCTGGTTCTCACGGGTCAAAAGAGGTGAAGGGGAGAACTCATACCTACTACCAGGTCCTCATCGACACGCGGGACTGCCCTCACATATCTCAGAGGTCTCAGACCGAAGCAGTGACGTTCCTGGCGAACCATGACGACAGCAGAGCCCTCTATGCCATCCCAGgtctggaCTATGTGAGTCATGAAGACATCCTGCCCTACAACTCCACAGAGCAGGTCCCCATCCAGCACGAGCTGTTTGAGCGCTTCCTCATGTTCAGCCCTGACAAAACCACCCCAGCTCCCCCGTTCAGTGCGAGGGACACTCTGAAGGCATGGCAGGAGAAGAATCATCCCTGGCTGGAGCTGTCCGACGTGCACAGAGAGACGACGGAGAACATCCGGGTCACTGTCATCCCCTTCTACATGGGCATGAGGGATGCTCAAAATTCTCATGTGTATTGGTGGCGGTACTGCATCCGCCTGGAGAACATGGGCAGTGAGGTGGTGCAACTGAGGGAGAGACACTGGAGGATCTTCAGCCTGTCAGGCACGCTGGAGACGGTCCGGGGACGGGGGGTCGTAGGTCGGGAACCAGTGTTGTCCAAAGAGCAGCCAGCCTTCCAGTACAGCAGCCATGTTTCCCTTCAAGCACCCAGTGGACACATGTGGGGAACCTTCCGCATCGAGAGGACGGACGGCTCCCACTTTGATGTGCGCATTCCCCCGTTTTCCCTGGAGAGCAACAAGGATGACAAGGCACCCCCGGCTGGCTACACCTTCTGAGGCAACGCAGCAGCAGGGGCATGTCCCTCAGCGCAGTCGAACAGCCAAGCCATCCTTAGGAACGGATCAACCCTTCCTCTGCTACTTCTTCCTCATTGATATTTTAAGAAACTGATTTATTTGAGCACattgaaatgagatgttcaatgaaaAGGGACAAAAATTGGCCTCCCAACATTTGTAGCTAATGAGAACTTTTGCTTTTTAGTGGGAAGGACAAGCGTTCGGTCACAGAGGTTGTTGCTTGAGATCGTTCTGCATAGGCAGAATGGCACGGTGAGCACTGATGGTATTTGCATTTATTATTATGAGTGGGAATGAATTATTCCAATGGTTTCTCTCAGCCATAATCGCTTGACCCAGAGGTAGACGTCTAAAACCAGCCTCCCTTGGTGTATTTTATTGGTGTTTCTAAATGGTTCAAATCAGCAGACCTGGTGGGAAATCATCGAAAGGACTTTACTAAAGCCAAATAGAACGTGTCCAATAGGAGCCCTACTCTTTTAAGAGACCTCAGTCAAGTCTAGACCTCCGTGTTGCTCTGTATAGTATTATGCAAATGACTGTTGTGCCTGTTTGGCTTGTCTGTCTCTTTGAGCCTCCCTGATGGGGCCTGTTTGGCTTGTCTGTCACTTTGAGCCTCCCTGATGGGGCCTGTGGTGAAACATGTAGAAAAGGGAAAGGGAACCTTGGttatgtctcaaatggcaccctattccctatgaagtgcactatatagggaataggttgctgtTTGGGATGTTACCATTGAACGGAACAAGAAAGTGGAATACAGGGGGAGTCAGTGAGCTAAGGATGTCGTAGTGACCCCCATTGATGTTACCAACCTGTAGGTTTTGTCTGATATGAGGGCCGGGTTCAGGAGAGTGATCTGTTTCAGGTATGAATATCATGCATAGAGCAGACATGGTTCCTCATTCGACATGACGGCGAATCATGTCTGTTCCACACAATGTATTTAGATCTGAACATTTCATGTTGTTATTTGAGCGTGGTGTGTGTTGGTGAGGGAGGTGTCTGGGAGACGGACCGGGTGCTATGCTGCTCGAGTCTGTCGTGTCCAACCCTTTGAGTCAGTTCTGTGGGTTGAAGTCTGTTTGATTTTTGCCTTGTTTAGGGAAGAAACTTTTTTTGATAAGTGATTTGAAATGACTGTGTAATGGTTGAATGATGTTCCGTGACAAAGTTGTAAAGAcaaataaatgtacattttaaagA

Function

NR:

description
polymerase delta-interacting protein 2-like isoform X2

GO: NA

KEGG:

id description
K17809 POLDIP2; polymerase delta-interacting protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587561.2 False 2578 mRNA 0.49 11 10236369 10250613
XM_021587559.2 False 2577 mRNA 0.49 11 10236375 10250613
XM_021587560.2 True 2568 mRNA 0.49 11 10236378 10250613

Neighbor

gene id symbol gene type direction distance location
LOC110507518 LOC106562846 coding upstream 2509 10230705 ~ 10233860 (+)
sebox LOC106580896 coding upstream 17683 10217520 ~ 10218686 (+)
LOC110507517 LOC106580780 coding upstream 22764 10193680 ~ 10213605 (+)
LOC110507516 LOC106580779 coding upstream 71654 10156632 ~ 10164715 (+)
LOC110507514 LOC106580778 coding upstream 85718 10146557 ~ 10150651 (+)
LOC110507067 LOC106580782 coding downstream 1276 10251889 ~ 10282483 (+)
LOC110507520 LOC106580783 coding downstream 36580 10287193 ~ 10293719 (+)
LOC100136196 LOC100136196 coding downstream 43366 10293979 ~ 10299855 (+)
LOC110507521 LOC106580786 coding downstream 55212 10305825 ~ 10384673 (+)
LOC110507523 LOC106580787 coding downstream 134194 10384807 ~ 10390951 (+)
G2050123 NA non-coding upstream 16754 10219253 ~ 10219615 (+)
G2050122 NA non-coding upstream 21421 10214644 ~ 10214948 (+)
G2050109 NA non-coding upstream 44127 10191987 ~ 10192242 (+)
LOC110507511 LOC106580774 non-coding upstream 157559 10057431 ~ 10079394 (+)
G2050017 NA non-coding upstream 213624 10019610 ~ 10022745 (+)
G2050164 NA non-coding downstream 61475 10312088 ~ 10371018 (+)
G2050178 NA non-coding downstream 125496 10376109 ~ 10377333 (+)
G2050200 xaf1 non-coding downstream 210257 10460870 ~ 10462018 (+)
G2050234 NA non-coding downstream 264741 10515354 ~ 10515598 (+)
G2050212 NA non-coding downstream 298434 10549047 ~ 10549304 (+)
G2049657 NA other upstream 448254 9787806 ~ 9788115 (+)
G2049339 LOC100380674 other upstream 827798 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 1512066 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 2978139 7256631 ~ 7258230 (+)
G2046345 NA other upstream 2984794 7245806 ~ 7251575 (+)
LOC110507524 LOC106612657 other downstream 155760 10391240 ~ 10417311 (+)
rap1gap2a LOC106580794 other downstream 325097 10494894 ~ 10583085 (+)
LOC110507540 git1 other downstream 524474 10755190 ~ 10778403 (+)

Expression


Co-expression Network