LOC110507520 (LOC106580783)


Basic Information

Item Value
gene id LOC110507520
gene name LOC106580783
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10287193 ~ 10293719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587563.2
GGCTAATGGGGTCGGTTTTGTTTCCCCGGATCCGCCATTTCATTTTTTGAAGTTACTTGTGACAAGTTACAAGATTTGATCAAAATCGTATTGTTTTACAACTGGGTTGGGTAAGTTGTAATCGACATATTTTAATTGGGTGATCAGACACGTTTTGTACGAGGACCGGCTTTTGGATTTTAACTTGATGGGCATAGGCAAGTTGCGGATGTCGCCTATTTTCCAAATGTGTTCTACGCGCTAAAGTTTTTGTATGAGTTGAATGCTGGTTGTGGATAAGGGGATTCAAAGGGAAGGCCCGTGAAGCCTCGGCTTTGGAGTGGGAGTCATGTCCGGAAATTTTGACGCAGAGGATCGTGCAAGTTGGTACTGGGGAAGATTAAGTAGACAGGAGGCAGTTTCACTTTTACAAGGACAGAGACACGGAGTGTTTTTGGTGAGAGACTCAATTACAAGCCCTGGCGACTACGTCCTGTCCGTTTCAGAGAATTCCAAAGTCTCGCATTACATAATCAACAGCATCAGCAACAACCGGCAGTCTGGCTCAGGCCAGGCGCCTCCACGGTTTCGCATAGGGGACCAGGAGTTTGACGCCCTCCACTCCCTGCTGGAGTTCTACAAGATCCACTACCTGGACACCACCACTCTGATAGAGCCCATCAACAAGGCAAAACACTCTCCCTTGGTCAGCGTCAACGCAGGTGCTGGAGGCCCGCCGCAGCGGCAGGAAGATGAGATGGTCCGTGCCCTCTTCGACTTCCCAGGCAACGATGATGAAGATCTGCCTTTCAAAAAGGGCGACATCCTGCGGGTCCTGGAGAAGCCTGAGGAGCAGTGGTGGAACGCCAAGAATTTAGAGGGGCGTGCCGGGATGATCCCTGTGCCCTACGTGGAGAAGTACCGACCGGCCTCTCCCACCTCGGGGGGCCTTGGAACAGGGGGTCCAGGTGGGGTGGGCTCGGTAGACGGCTCAAGTGTTCAGGGCCCTCCTCTGCTAGACCCGAGCCAGTATGCCCAGCCCACACCTCTGCCCAACCTGCAGAACGGACCCGTCTTTGCCAGGGCCATCCAGAAGAGGGTGCCCAATGCCTATGACAAGACCGCCCTTGCCTTAGAGGTGGGCGACATGGTGAAGGTGACAAAGATCAATGTGAACGGCCAGTGGGAGGGCGAGTGCAAGGGCAAACGAGGCCACTTCCCCTTCACACATGTTAAGCTGCTGGACCATAATAACCCCGAGGACGACGTGAGCTGAGAGTGGACACTGGGCTCCTTGGGCTCCTCCCATCCCTCACCctgcccttacacacacacacacagacactcactccCTCACATGCCACCATCGGCCCTGTGCcaatcagcagcctccacactcagacacacacaccacttcctCTTCCTCAGTTGGCCCTGTTAGATCATCATTACTCTGTGTCTTCGTCTCACACACCACCATTATTTATACCACTTCAGCACCATGGCCAGCTctatcaaaacacacacacattccccttcTAAAGAAGAAAGACTCAGGCCTTGTCTGATGGGATGAGGACAGCGGCTGTGTAATACAAAGAGGAAGATTTGGAGTGTGTGGTCGAAATGCTCTCTTGGGCTGGAATCGTACACACAGAGATCCATGGAGAAACACTTTTCTCTGGCTGTCGAAGAGAGCCGTTAGAATGACACTACACTGTACACAAAACTATCATCCTCACTACAAATCCACGACCAAGTAACTAGTAGTCTTTTTGTAAGGGAAAAAAATAACATATCGTTATGAAATTATTGAGAACCATTACATgctaaaatcctgtttttttttgttgtttttttggccTCGTTTTTCTGAGAAGTAAGATTGCCAGTCCACCACTATTGCGGAGATCTCGTCAAATGTGTCGGCTATGTTGTGAGCTTGCGGTATTGTCAGGCGCTGACCCTCTCTGTCGTACTTGTTTGTGTCTGTCTTGCCTTGCTTGTCTGTGCTCTTTGACAAGCCTTTGTCTgctccactcctactctgaaTCACTGAGACGTCGCTCTTTCCCACCCACGGCTGTTAACTTGTTCTAAATATTGGAGATGCCTTTTGTATGATCTGCCAGGGTCGTGGAAACGTTCTGCCATATCATATAATACCATAGCCAAGGATAGACGGTTAAAATGACTTAAGCTCAATGGTAACATGAATTGTCTTTCTCCTTGGAAGCTTTTAGATTCTATACTGATTATGGTAGTACTTGTTCTCCTGTACACGTTGGTTACAAGGTCAAGGCACTGCATTGACACTGAGTTCTCACTTTTCCGTTCTAGATTCCTGTCATCCACTATATTTTGAGCATTGATGTCTGTCTGTATTCATTAGTGTAATAGAGTGAGAAAAACACACTTTCATTTGCATGCATCCACAAACCACCACACTACTTAGACTGTCAACTTTGAATAGGTGTCCTCTGTTGATAAGAGATCACAGTTAAGTCCACCTGTTGACACATGACGATGATCTTTCCATTCCTATCATGTAGGATACTGGCTAAGTTTGCTCCCTGGCACAGCATCATACAGACCATTCTTACGCTTTGCGCCCCACTGAATGTGCCCCTGAAATTCACTTGGATAACGCCACCTCCTAGAGTGGTTTCCCATAGATTAAGGCAAAGGTGACTTGAGAAATGGTTTACCTCGTCTTCAGTAGAACTGGCCACTAGGGTGCACTGCAACAGCATTAGGCAGAGAGGTGCTGGGTGAACCGAAGTGCTTGTCTGCCTCCGAGCTTTAGCCCATGTTGATCAATAGTGTTGTCTGTGTTGAGGATGCTGGAGGTGAAATATTTTCAGAATGCACTTTAGTCAATCATTTTTACAATTGCTTGCCAGTTCAGGCCCCTCCCTTTCCAATTGCTATTCTTGCCTTTTCTGCTGTGTTCATTGTCTGTGGCAGAACTTGTGCtggctttttacattttttatatatatctaACCTAAGGTAATTTAGCCCAAAATTTATGATGCAGCTGTGAAAAATCCAAATGCATGCATTGTCAGGGTGTGAAGACTTGAGTATGGTTATATGAGTTAAACTCCAATTATGTAGTACCTCATCCAAAATACACCGTCTGCTATACTCAGATGTAGGTTCTGGGTATTAGATGCTGCAAAATCCAGAGGAATAGAATCTATAACCTTTTGACAATTGGATTGTCCTGAAACCACAGGGGTTTTTCCATTGTCCTCAAACCTGTACCATTTCTCTCTATAATTGTAGCTTTCGGACCGACTGACAAACTGTTTTATAGCCAATTTATGCCACAATCTATGTTTAAGGGCacggttgggtaggttactttctaaatgtaatcagttactagttacctgttcaaaattgtaatcagtaataacttttggattacccaaactcagtaacaatCTGATTACTTTCCCCTTCATAAGCATTAAAAGAAGATGAAAAGGAACCATCAAACATTTGGGgtgtcatagtggtctctgacctgtggTCAGACCCGGTCAGGTATAACAAATCTAAACTTGCACCTTTTTCAATGCgaaattgaatgtcattgagaaaacaaaggtggcaatgtatttttttttctcgcaaacatcctttctgaatttacaAGTAATCAACAAGTTTTTCTAAAGTAACTAATCTGgttacaatattttagctggtaatGTAACTGATTACAGTTAGTTTctttgtaatcagttactccaGTATTAACATCTGTTAAATCATGTCTGCTTTTTCATTCATTCTCTCAATGCATGCCCGTTTATGTAATCTGCTCTTATTTTTATGATTTTGTTTTGTCAATCAGGCCTACAAATATTTTAAAGTATTGTATTTTTGTAACCCTGTGGAAGTCATTACCTTTCATAATGGGGCTTGGTTGGCAACCGCAAATGGAAATTGTGGTGATATCAAAATGTGCCATTGTATTATAACACTATATTCTTTCAAGACAATTGAAATTGCCATTTATTTTCTGTAGCATGTAATGTGTTAAGATATACATAGTAAATAAAGTCAAAGGATTGGCAAATGAAAATAC

Function

NR:

description
adapter molecule crk-like

GO:

id name namespace
GO:0007520 myoblast fusion biological_process

KEGG:

id description
K04438 CRK, CRKII; C-crk adapter molecule crk

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587563.2 True 4081 mRNA 0.44 3 10287193 10293719

Neighbor

gene id symbol gene type direction distance location
LOC110507067 LOC106580782 coding upstream 4979 10251889 ~ 10282483 (+)
LOC110507519 LOC106580781 coding upstream 36580 10236369 ~ 10250613 (+)
LOC110507518 LOC106562846 coding upstream 53333 10230705 ~ 10233860 (+)
sebox LOC106580896 coding upstream 68507 10217520 ~ 10218686 (+)
LOC110507517 LOC106580780 coding upstream 73588 10193680 ~ 10213605 (+)
LOC100136196 LOC100136196 coding downstream 260 10293979 ~ 10299855 (+)
LOC110507521 LOC106580786 coding downstream 12106 10305825 ~ 10384673 (+)
LOC110507523 LOC106580787 coding downstream 91088 10384807 ~ 10390951 (+)
LOC110507524 LOC106612657 coding downstream 97521 10391240 ~ 10417311 (+)
LOC110507528 LOC106580789 coding downstream 127179 10420898 ~ 10435520 (+)
G2050123 NA non-coding upstream 67578 10219253 ~ 10219615 (+)
G2050122 NA non-coding upstream 72245 10214644 ~ 10214948 (+)
G2050109 NA non-coding upstream 94951 10191987 ~ 10192242 (+)
LOC110507511 LOC106580774 non-coding upstream 208383 10057431 ~ 10079394 (+)
G2050017 NA non-coding upstream 264448 10019610 ~ 10022745 (+)
G2050164 NA non-coding downstream 18369 10312088 ~ 10371018 (+)
G2050178 NA non-coding downstream 82390 10376109 ~ 10377333 (+)
G2050200 xaf1 non-coding downstream 167151 10460870 ~ 10462018 (+)
G2050234 NA non-coding downstream 221635 10515354 ~ 10515598 (+)
G2050212 NA non-coding downstream 255328 10549047 ~ 10549304 (+)
G2049657 NA other upstream 499078 9787806 ~ 9788115 (+)
G2049339 LOC100380674 other upstream 878622 9407625 ~ 9408571 (+)
si:cabz01090165.1 LOC106580728 other upstream 1562890 8606550 ~ 8741534 (+)
G2046384 LOC106612398 other upstream 3028963 7256631 ~ 7258230 (+)
rap1gap2a LOC106580794 other downstream 281991 10494894 ~ 10583085 (+)
LOC110507540 git1 other downstream 481368 10755190 ~ 10778403 (+)
G2051034 NA other downstream 699266 10992985 ~ 10993588 (+)

Expression


Co-expression Network