LOC110507068 (LOC106612651)


Basic Information

Item Value
gene id LOC110507068
gene name LOC106612651
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 10609864 ~ 10642920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965200.1
AAAGTCCTAATGCCTTTGTTTTACAGCAACTTAAAAACCCTTTGTAGAGGACGGATTGCTCCCCTTGATTTATTTCTCAGCCTCTTctcgtgtgtgtgagagacgggGATTAACCTACTGCAGCTTGGGAAATAGATTGGAGTGACTCGCACTcgcagcagcaccaccaccaccaccaccaccagactggtgtgttctgtgtctgactctctctctctctgtggtcctctAGTGACTGGACTTGAAGTCTCTAACCTGGAGACTTCACCCTGACACAGGGGGCTTCATTGCACAGACACACAGTGTGTATGACACAGTCTTATGCAGGTGGTTGTAAGAGGAGTCAGGGATAGCTCCACTGCCACTCTTTCCCCCTTCAGAAATATGCGTCTTGGATTTAGGAGCAAGAGATCCCTGCGCTGgcaaaagctgtgtgtgtgtgtgtgtctaatcaAGGCAAAGTAGAATGTGGCCTTGGGTAAACCCAGCTCTGTCCAGTGTGTATCCGTGCCCTGCCTCTCCAGGATGCTGAGTCGGGACTGGGAGTGAGCTGGACGCTTATGGACAGCAGAGCTGGTCGCTGGTCCCAGCAGCATCCCACTTCACCCCAGTCTGGTACCGGTTGTGTCCCCGCTGGCGTTTGTCATAAAAGGTGGTGGTGCCAGGCAAAGAGTCCCACCTGGCCCAGtcacacctgctctctctctctcgcgctctctctctctctctatgctacCCCTCATCCCCTGATGGGCACCTCATCACACCGTGCCAAAAGTCCACCGTCTCTGCTAACAACCACACCACGCCCCTAACCACCGGCCATCGCCATGGAGATGACGCAGTCAGTGGTGATGGACAGAGAGAacgaagggggagagaaagagaaaggggaggagtCATCGCAAGAGAACGGCAGACTCATGCTGGCTGACGGAGGGGTGGCCGAGAAGGGGGACCCCAAAGTGAACTCTGGTGGGGGGTCAGGAGGGGTGTCCAACGGGTACCCCACGTCCACAGTGCAGAGCCCAAAGGAGGGAGCGGGAGGTGTACCCACAGGGGCCCCCAGGACTCTAGTGGTCCAGCAGACCAGTCTGGACCGGCCCCGGGAGACCTGGAGCAAGAAGATGGACTTTCTGTTGTCTGTGATTGGCTACGCCGTGGACCTGGGAAATGTGTGGCGCTTCCCCTACATCTGCTATCAAAACGGCGGAGGTGCCTTCCTGCTGCCCTACATGTTGATGGCAGTATTCGGCGGCGTGCCTCTGTTCTACATGGAGCTGGCACTGGGGCAGTTCCACCGCAGCGGCTGCATCTCCATCTGGAAACACATCTGCCCCATCTTCAAGggtgTGGGCTTCGCCATCTGCATCATAGCGCTGTACATTGCGTTCTACTACAACACCATCATGGCGTGGGCCCTGTACTACCTGCTGGCGTCGTTCCGGCCCACCCTGCCCTGGACCACGTGCTCCAACCCCTGGAACACGGTCAACTGTCTCCGCTACCTGTCCACCGACAGCAACGTCACCTGGACCAACACGTCCACCTCGCCCGCCGAGGAGTTCTATACGCGTCAGGTACTGCAGGTACACCTGTCTCCAGGTCTACACCAGCTAGGCAGTGTGAGTTGGCAGCTGGCTCTCTGCCTCCTGTTCATCTTCACCATCGTCTACTTCAGCATCTGGAAGGGAGTCAAGACCTCTGGCAAGGTGGTGTGGGTGACAGCCACCTTCCCCTACCTTGTCTTGCTGGTGCTGCTCGTTCGTGGGGCCACTCTGCCCGGGGCCTGGAGGGGCGTGGTCTTCTACCTCAAACCTGATTGGGGGAAACTACTCAGCACCACAgtATGGATTGATGCTGCAGCTCAGATCTTCTTCTCTCTGGGACCAGGTTTTGGGGTGCTCCTGGCCTTTGCCAGCTACAACCCCTTTCACAACAACTGCTACAAGGATGCGTTGGTGACCAGCTCGGTGAACTGCCTGACCAGTTTCCTCTCTGGGTTTGTCATCTTTACTGTGCTCGGCTACATGGCTGAGATGCGCAAAATAGGCGTGGAGACCGTAGCCAAGGATGCTGgtcccagtctgctgttcatCATCTATGCTGAAGCCATCGCCAACATGCCCGCTGCCACCTTCTTCGCCATCATCTTCTTCCTCATGATCATCATGCTGGGGCTGGACAGCACATTTGCCGGTCTGGAGGGGGTGATCACAGCCATGCTGGATGAGTTCCCCCAATTGTTGTCTAGGAGGAGGGAGTTGTTTGTCCTGGGTCTGGTGTGTGTCTGCTACCTGGGAGCGCTCTCCACCCTCACCTACGGAGGTGCGTTTGTGGTGAAACTGTTTGAGGAGTACGCCACAGGACCTGCTGTCATCACTGTGGTCTTCCTAGAAGTCATCGCTGTTTCCTGGTTCTACGGCACCAGTCGTTTCTGCGCTGATGTCAATATGATGCTGGGCTTCTCCCCTGGACTATTCTGGAGGGTGTGCTGGGTAGCCATCTGCCCCATCTTCCTACTGTTCATCATTGTCAGTTTCCTGGCGTTCCCCCCGGAGGTCAAGTTGTTTGACTACGTCTACCCACCCTGGACCACAGTTCTGGGCTACTGCATCGGAGTGTCCTCCTTCATCTGTGTACCAGCCTACATGGTGTACCACCTGCTCACTGCCAAAGGGACCTTTAAACAGCGTCTCCTGAATGGCATCACCCCTGTACCCAGTGGGCCTCACAGTGACATTATCATCACCCACGCTGTCTGACCCAGTGGTCTGACCAGGCCGGGTGGACTACACCACCCTCTGCTGGACATAGAGCACAACTGCAGGACGGGGAgggttcacccccccccccccccccccccatcccactTCTCCTCCAGAACCCCCACAGCAGACTACCGAAGCACAGAGGCACCCTGTTTATCCCACTTACCCCAGGGCTGAGGTGGGGGCGCTGGGCCATCCCACACCCCTCTTCCGTCGTCTCCCTTCTGGCTCATTCTGTTAGCGGCTAATGTCGTCACTGGTTTCATACTGGGCCACGCTGGTCAGAGCATTTCAACCACCAGACAGAGGGTTTTTAGATGCCACAGCACAACGGCATGTGTACTGTTATTGAAGCGTAATGTTGCCTTTCAAGTCTATACCTGTCCATTACAATTGGAATCCATCCGCACAGTATGAGGCATAAACACACACGCTTCCTTGTCTCTGCTCTGTCAGGTCCACGAAACAATGTTTATATCAGGAGCAAACATCTCATCTCACGGCTTCGTTCGAGGTTATATCCTTGTTTCATGAGTTCTGCGTTCAGATATTTAGCTGGGCATTGATTGCAAAATGCAGGTATCTTTTTTAAGTTTCTCTATGAAACCAAATATTCCATGGATATTTCTAAAGGTATTTCCAGATGTGAGCTGTTGTCCTGCTTTAGGAGGACTTGGTGGGAGCTTGTCAGTGTTTCTGAACGGGATGGCTGAACCTATGAAGGGCCTTGATGAGTGTCAGAGCGTCTCCACACGGTGAAGCGCTGTATGTTGGTGTTTTATGACGCACTGCAGTACTGATTATGCTCTATAAGCGTATCCAAGTTGTTGGGGGACATAGAGACCAGTTCAGAAGAGAAAACGGGGCTTTGTCCAGTTATGTGGGGGGATTCTTTAGCTGCAGTATGGAAGGCTCTGGTGCGCGTGTACGCAGGCCCTGTGCAGATCAGAAGGAGTGGGTTATATTATCCCAATGTAAGATGTATATTTATTTGAAATAATTATTATTGCTCTCAAATCTATACGTTCATGTGTTTGTCTAACTCATTTACTATAAGTTTGATTTAGTTTCTTAATATGTAAAACACCATTTCCACGCTAACTGCCTACATCGGGAACCCAGTATTGAACACAACTATGTTCATCtccttcatctctgtctctcagtcttcaAGGATGTGTCTAAAAACAGGTATCGGTCTTTACTTTCGACCAAATAGTCTGTTGTGTGTTGGAATGGGAGTCGTAGTATGACATGTGTATTAAGTGAGTCTTGGTGTGGGTGTGTCTCTCTTTGTTCTGTGAATACTTGTCTACTCTCTTGAATGgattatgtttgtgtgtgcatcaGACCAGGGTGCAAATACTATAGGGAATCTTTCAAGTACTTTGTGTTTTCCTTGGCCTGCCtagtgccagatgggcggggtaTGTTTTAGCCTGCCTCatgccagatgggcggggtttgttTTAGCCTGCCTAGTGCTAGATGGGCGGGGTTTGTTTTAGCCTGCCTAGTGCCAGATGGGCGAGGTTTGTTTTAGCCTGCCTcgtgccagatgggcggggtttgttTTAGCCTGCCTCgtgccagatgggtggggtttgtTTTAGCCTGCCTcgtgccagatgggcggggtttgttTTAGCCTGCCTCGTGCCAGATGGGCGGGTTTGTTTTAGCCTGCCTCGTGCCAGAGGGGCGGGGTTTGCAGGATTGCGACTGTTCTATTGGTTCCGTTgaaccaggcaagctcaatcaaatcGGAAGTATTTGAaacgatttcaaatagtattttacctGGGGATTGGTGTACGTGTGTCTAAGCGTGCATACCTTGCGAGCATGCATACATGAGTGTGCGtgtatacacgtgtgtgtgtgtgtcagcgtgcaTACATGAGTGTGCGtgtatacacgtgtgtgtgtgtgtcagcgtgcatgtgtgtgtacattatGAACTGAAGTAGCAGTGTCAGACTCTGTCAACTTTGtcagtgtgtgtaacctgtgtgtgtgtaacctgtgtgtgcatgccagtgtgtgtaacctgtgtgtgCATGCCAGTGTGTTCATGccagtgtgtgtaacctgtgcTTCAGCTTGCGTCTGTGATGTGACCTTGTCTTGTTCCTCTCCAAAATATCCAATGAAGATGATAAAACCACTCCCTTGTACCTCTCGAGCCTATATAATGTATGACCTATGTATGTCTGTTAAAGATTGTATTGAGAAATAAACCTGTATAGAAGAAAGATATACATATTAtatgaatgaataaataaataaagttaaGAT
>XM_036965199.1
acacagagagagtagaggaagagggacacagagagagtagaggaagagggacacagagagagtagaggaagaggGTGTAAGAAACTCCAGCGGGGTGTAGGGGGAGTGTCTGTACGTGTTCTTCAGAGGGACGGTGGTGAGTACCACCCTGACACAGACCCCCACATAACTACGGAACCACTGCACGTCTGGTACCGGTTGTGTCCCCGCTGGCGTTTGTCATAAAAGGTGGTGGTGCCAGGCAAAGAGTCCCACCTGGCCCAGtcacacctgctctctctctctcgcgctctctctctctctctatgctacCCCTCATCCCCTGATGGGCACCTCATCACACCGTGCCAAAAGTCCACCGTCTCTGCTAACAACCACACCACGCCCCTAACCACCGGCCATCGCCATGGAGATGACGCAGTCAGTGGTGATGGACAGAGAGAacgaagggggagagaaagagaaaggggaggagtCATCGCAAGAGAACGGCAGACTCATGCTGGCTGACGGAGGGGTGGCCGAGAAGGGGGACCCCAAAGTGAACTCTGGTGGGGGGTCAGGAGGGGTGTCCAACGGGTACCCCACGTCCACAGTGCAGAGCCCAAAGGAGGGAGCGGGAGGTGTACCCACAGGGGCCCCCAGGACTCTAGTGGTCCAGCAGACCAGTCTGGACCGGCCCCGGGAGACCTGGAGCAAGAAGATGGACTTTCTGTTGTCTGTGATTGGCTACGCCGTGGACCTGGGAAATGTGTGGCGCTTCCCCTACATCTGCTATCAAAACGGCGGAGGTGCCTTCCTGCTGCCCTACATGTTGATGGCAGTATTCGGCGGCGTGCCTCTGTTCTACATGGAGCTGGCACTGGGGCAGTTCCACCGCAGCGGCTGCATCTCCATCTGGAAACACATCTGCCCCATCTTCAAGggtgTGGGCTTCGCCATCTGCATCATAGCGCTGTACATTGCGTTCTACTACAACACCATCATGGCGTGGGCCCTGTACTACCTGCTGGCGTCGTTCCGGCCCACCCTGCCCTGGACCACGTGCTCCAACCCCTGGAACACGGTCAACTGTCTCCGCTACCTGTCCACCGACAGCAACGTCACCTGGACCAACACGTCCACCTCGCCCGCCGAGGAGTTCTATACGCGTCAGGTACTGCAGGTACACCTGTCTCCAGGTCTACACCAGCTAGGCAGTGTGAGTTGGCAGCTGGCTCTCTGCCTCCTGTTCATCTTCACCATCGTCTACTTCAGCATCTGGAAGGGAGTCAAGACCTCTGGCAAGGTGGTGTGGGTGACAGCCACCTTCCCCTACCTTGTCTTGCTGGTGCTGCTCGTTCGTGGGGCCACTCTGCCCGGGGCCTGGAGGGGCGTGGTCTTCTACCTCAAACCTGATTGGGGGAAACTACTCAGCACCACAgtATGGATTGATGCTGCAGCTCAGATCTTCTTCTCTCTGGGACCAGGTTTTGGGGTGCTCCTGGCCTTTGCCAGCTACAACCCCTTTCACAACAACTGCTACAAGGATGCGTTGGTGACCAGCTCGGTGAACTGCCTGACCAGTTTCCTCTCTGGGTTTGTCATCTTTACTGTGCTCGGCTACATGGCTGAGATGCGCAAAATAGGCGTGGAGACCGTAGCCAAGGATGCTGgtcccagtctgctgttcatCATCTATGCTGAAGCCATCGCCAACATGCCCGCTGCCACCTTCTTCGCCATCATCTTCTTCCTCATGATCATCATGCTGGGGCTGGACAGCACATTTGCCGGTCTGGAGGGGGTGATCACAGCCATGCTGGATGAGTTCCCCCAATTGTTGTCTAGGAGGAGGGAGTTGTTTGTCCTGGGTCTGGTGTGTGTCTGCTACCTGGGAGCGCTCTCCACCCTCACCTACGGAGGTGCGTTTGTGGTGAAACTGTTTGAGGAGTACGCCACAGGACCTGCTGTCATCACTGTGGTCTTCCTAGAAGTCATCGCTGTTTCCTGGTTCTACGGCACCAGTCGTTTCTGCGCTGATGTCAATATGATGCTGGGCTTCTCCCCTGGACTATTCTGGAGGGTGTGCTGGGTAGCCATCTGCCCCATCTTCCTACTGTTCATCATTGTCAGTTTCCTGGCGTTCCCCCCGGAGGTCAAGTTGTTTGACTACGTCTACCCACCCTGGACCACAGTTCTGGGCTACTGCATCGGAGTGTCCTCCTTCATCTGTGTACCAGCCTACATGGTGTACCACCTGCTCACTGCCAAAGGGACCTTTAAACAGCGTCTCCTGAATGGCATCACCCCTGTACCCAGTGGGCCTCACAGTGACATTATCATCACCCACGCTGTCTGACCCAGTGGTCTGACCAGGCCGGGTGGACTACACCACCCTCTGCTGGACATAGAGCACAACTGCAGGACGGGGAgggttcacccccccccccccccccccccatcccactTCTCCTCCAGAACCCCCACAGCAGACTACCGAAGCACAGAGGCACCCTGTTTATCCCACTTACCCCAGGGCTGAGGTGGGGGCGCTGGGCCATCCCACACCCCTCTTCCGTCGTCTCCCTTCTGGCTCATTCTGTTAGCGGCTAATGTCGTCACTGGTTTCATACTGGGCCACGCTGGTCAGAGCATTTCAACCACCAGACAGAGGGTTTTTAGATGCCACAGCACAACGGCATGTGTACTGTTATTGAAGCGTAATGTTGCCTTTCAAGTCTATACCTGTCCATTACAATTGGAATCCATCCGCACAGTATGAGGCATAAACACACACGCTTCCTTGTCTCTGCTCTGTCAGGTCCACGAAACAATGTTTATATCAGGAGCAAACATCTCATCTCACGGCTTCGTTCGAGGTTATATCCTTGTTTCATGAGTTCTGCGTTCAGATATTTAGCTGGGCATTGATTGCAAAATGCAGGTATCTTTTTTAAGTTTCTCTATGAAACCAAATATTCCATGGATATTTCTAAAGGTATTTCCAGATGTGAGCTGTTGTCCTGCTTTAGGAGGACTTGGTGGGAGCTTGTCAGTGTTTCTGAACGGGATGGCTGAACCTATGAAGGGCCTTGATGAGTGTCAGAGCGTCTCCACACGGTGAAGCGCTGTATGTTGGTGTTTTATGACGCACTGCAGTACTGATTATGCTCTATAAGCGTATCCAAGTTGTTGGGGGACATAGAGACCAGTTCAGAAGAGAAAACGGGGCTTTGTCCAGTTATGTGGGGGGATTCTTTAGCTGCAGTATGGAAGGCTCTGGTGCGCGTGTACGCAGGCCCTGTGCAGATCAGAAGGAGTGGGTTATATTATCCCAATGTAAGATGTATATTTATTTGAAATAATTATTATTGCTCTCAAATCTATACGTTCATGTGTTTGTCTAACTCATTTACTATAAGTTTGATTTAGTTTCTTAATATGTAAAACACCATTTCCACGCTAACTGCCTACATCGGGAACCCAGTATTGAACACAACTATGTTCATCtccttcatctctgtctctcagtcttcaAGGATGTGTCTAAAAACAGGTATCGGTCTTTACTTTCGACCAAATAGTCTGTTGTGTGTTGGAATGGGAGTCGTAGTATGACATGTGTATTAAGTGAGTCTTGGTGTGGGTGTGTCTCTCTTTGTTCTGTGAATACTTGTCTACTCTCTTGAATGgattatgtttgtgtgtgcatcaGACCAGGGTGCAAATACTATAGGGAATCTTTCAAGTACTTTGTGTTTTCCTTGGCCTGCCtagtgccagatgggcggggtaTGTTTTAGCCTGCCTCatgccagatgggcggggtttgttTTAGCCTGCCTAGTGCTAGATGGGCGGGGTTTGTTTTAGCCTGCCTAGTGCCAGATGGGCGAGGTTTGTTTTAGCCTGCCTcgtgccagatgggcggggtttgttTTAGCCTGCCTCgtgccagatgggtggggtttgtTTTAGCCTGCCTcgtgccagatgggcggggtttgttTTAGCCTGCCTCGTGCCAGATGGGCGGGTTTGTTTTAGCCTGCCTCGTGCCAGAGGGGCGGGGTTTGCAGGATTGCGACTGTTCTATTGGTTCCGTTgaaccaggcaagctcaatcaaatcGGAAGTATTTGAaacgatttcaaatagtattttacctGGGGATTGGTGTACGTGTGTCTAAGCGTGCATACCTTGCGAGCATGCATACATGAGTGTGCGtgtatacacgtgtgtgtgtgtgtcagcgtgcaTACATGAGTGTGCGtgtatacacgtgtgtgtgtgtgtcagcgtgcatgtgtgtgtacattatGAACTGAAGTAGCAGTGTCAGACTCTGTCAACTTTGtcagtgtgtgtaacctgtgtgtgtgtaacctgtgtgtgcatgccagtgtgtgtaacctgtgtgtgCATGCCAGTGTGTTCATGccagtgtgtgtaacctgtgcTTCAGCTTGCGTCTGTGATGTGACCTTGTCTTGTTCCTCTCCAAAATATCCAATGAAGATGATAAAACCACTCCCTTGTACCTCTCGAGCCTATATAATGTATGACCTATGTATGTCTGTTAAAGATTGTATTGAGAAATAAACCTGTATAGAAGAAAGATATACATATTAtatgaatgaataaataaataaagttaaGAT

Function

NR:

description
sodium-dependent serotonin transporter

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0006837 serotonin transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008144 drug binding molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05037 SLC6A4, SERT; solute carrier family 6 (neurotransmitter transporter, serotonin) member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965200.1 False 5069 mRNA 0.52 14 10609864 10642920
XM_036965199.1 True 4645 mRNA 0.52 14 10616095 10642920

Neighbor

gene id symbol gene type direction distance location
LOC110507537 blmh coding upstream 3907 10587351 ~ 10605957 (+)
rap1gap2a LOC106580794 coding upstream 27258 10494894 ~ 10583085 (+)
LOC118944660 NA coding upstream 77700 10530057 ~ 10532164 (+)
LOC110507527 LOC106580793 coding upstream 153489 10451926 ~ 10456375 (+)
LOC110507525 LOC106580790 coding upstream 160250 10437149 ~ 10449614 (+)
LOC110507539 ssh2 coding downstream 34930 10677850 ~ 10714953 (+)
LOC110507540 git1 coding downstream 112270 10755190 ~ 10778403 (+)
LOC110507542 LOC106580802 coding downstream 144722 10787642 ~ 10805536 (+)
LOC110507543 NA coding downstream 167028 10809948 ~ 10812006 (+)
LOC110507544 LOC106580804 coding downstream 172000 10814920 ~ 10913222 (+)
G2050212 NA non-coding upstream 60560 10549047 ~ 10549304 (+)
G2050234 NA non-coding upstream 94266 10515354 ~ 10515598 (+)
G2050200 xaf1 non-coding upstream 147846 10460870 ~ 10462018 (+)
G2050178 NA non-coding upstream 232531 10376109 ~ 10377333 (+)
G2050164 NA non-coding upstream 238846 10312088 ~ 10371018 (+)
G2050281 NA non-coding downstream 8013 10650933 ~ 10739687 (+)
G2050334 NA non-coding downstream 75294 10718214 ~ 10720467 (+)
G2050364 NA non-coding downstream 138988 10781908 ~ 10783075 (+)
G2050329 NA non-coding downstream 145472 10788392 ~ 10789424 (+)
LOC110507524 LOC106612657 other upstream 192569 10391240 ~ 10417311 (+)
LOC110507523 LOC106580787 other upstream 218963 10384807 ~ 10390951 (+)
LOC110507067 LOC106580782 other upstream 327381 10251889 ~ 10282483 (+)
G2049657 NA other upstream 821749 9787806 ~ 9788115 (+)
G2051034 NA other downstream 350065 10992985 ~ 10993588 (+)
G2051018 LOC106580809 other downstream 1484521 12127441 ~ 12137799 (+)
nudt8 LOC106580825 other downstream 1795039 12436060 ~ 12439501 (+)
G2053443 NA other downstream 2335607 12978527 ~ 12978923 (+)

Expression


Co-expression Network