Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110507540 |
| gene name | git1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048591.1 |
| NCBI id | CM023245.2 |
| chromosome length | 51556237 |
| location | 10755190 ~ 10778403 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| git1 | Predicted to enable GTPase activator activity and metal ion binding activity. Acts upstream of or within angiogenesis. Is expressed in head. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder. Orthologous to human GIT1 (GIT ArfGAP 1). |
| description |
|---|
| PREDICTED: ARF GTPase-activating protein GIT1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021587581.2 | False | 5528 | mRNA | 0.52 | 21 | 10755190 | 10778403 |
| XM_021587582.2 | False | 5525 | mRNA | 0.52 | 21 | 10755190 | 10778403 |
| XM_021587583.2 | False | 5501 | mRNA | 0.52 | 20 | 10755190 | 10778403 |
| XM_021587585.2 | False | 5225 | mRNA | 0.51 | 20 | 10755190 | 10778403 |
| XM_021587584.2 | False | 4937 | mRNA | 0.53 | 21 | 10755756 | 10778403 |
| TU2345198 | False | 4144 | lncRNA | 0.48 | 3 | 10773826 | 10778367 |
| TU2345197 | False | 2883 | TUCP | 0.48 | 3 | 10775087 | 10778367 |
| TU2345199 | True | 384 | TUCP | 0.62 | 3 | 10775087 | 10775868 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110507539 | ssh2 | coding | upstream | 40237 | 10677850 ~ 10714953 (+) |
| LOC110507068 | LOC106612651 | coding | upstream | 112270 | 10609864 ~ 10642920 (+) |
| LOC110507537 | blmh | coding | upstream | 149233 | 10587351 ~ 10605957 (+) |
| rap1gap2a | LOC106580794 | coding | upstream | 172584 | 10494894 ~ 10583085 (+) |
| LOC118944660 | NA | coding | upstream | 223026 | 10530057 ~ 10532164 (+) |
| LOC110507542 | LOC106580802 | coding | downstream | 9239 | 10787642 ~ 10805536 (+) |
| LOC110507543 | NA | coding | downstream | 31545 | 10809948 ~ 10812006 (+) |
| LOC110507544 | LOC106580804 | coding | downstream | 36517 | 10814920 ~ 10913222 (+) |
| LOC118944743 | NA | coding | downstream | 188530 | 10966933 ~ 10971183 (+) |
| LOC110507545 | LOC106612642 | coding | downstream | 193577 | 10971980 ~ 12125733 (+) |
| G2050281 | NA | non-coding | upstream | 15503 | 10650933 ~ 10739687 (+) |
| G2050334 | NA | non-coding | upstream | 34723 | 10718214 ~ 10720467 (+) |
| G2050212 | NA | non-coding | upstream | 205886 | 10549047 ~ 10549304 (+) |
| G2050234 | NA | non-coding | upstream | 239592 | 10515354 ~ 10515598 (+) |
| G2050200 | xaf1 | non-coding | upstream | 293172 | 10460870 ~ 10462018 (+) |
| G2050364 | NA | non-coding | downstream | 3505 | 10781908 ~ 10783075 (+) |
| G2050329 | NA | non-coding | downstream | 9989 | 10788392 ~ 10789424 (+) |
| G2050374 | NA | non-coding | downstream | 30509 | 10808912 ~ 10809213 (+) |
| G2050376 | NA | non-coding | downstream | 33867 | 10812270 ~ 10814191 (+) |
| G2050394 | NA | non-coding | downstream | 55750 | 10834153 ~ 10839672 (+) |
| LOC110507524 | LOC106612657 | other | upstream | 337895 | 10391240 ~ 10417311 (+) |
| LOC110507523 | LOC106580787 | other | upstream | 364289 | 10384807 ~ 10390951 (+) |
| LOC110507067 | LOC106580782 | other | upstream | 472707 | 10251889 ~ 10282483 (+) |
| G2049657 | NA | other | upstream | 967075 | 9787806 ~ 9788115 (+) |
| G2051034 | NA | other | downstream | 214582 | 10992985 ~ 10993588 (+) |
| G2051018 | LOC106580809 | other | downstream | 1349038 | 12127441 ~ 12137799 (+) |
| nudt8 | LOC106580825 | other | downstream | 1659556 | 12436060 ~ 12439501 (+) |
| G2053443 | NA | other | downstream | 2200124 | 12978527 ~ 12978923 (+) |
| LOC110507618 | LOC107659943 | other | downstream | 2776337 | 13554250 ~ 13575495 (+) |
