pcsk7 (LOC106580820)


Basic Information

Item Value
gene id pcsk7
gene name LOC106580820
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12374563 ~ 12396767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587611.2
CTCCCCCAAGTGGAGAAACAAATTATAGACGGCCAAGTTGTTGCGGAAGTGACAACATTTCGGAAAACGACAGATGACAGCGAAATAGCTATCGTAAATGAAATTGTTGTCCACAAATAAACTGTACAATAAAGACGTCGACGAAAAGGCTGCCGGTCCTAATGTGGAGGCGGAGCAGAACTTGCGTTGAGCACCTGCCTGTGTTGCCATGGGTTCACCCCCCTTGTTCCTGCTCCTCCTGGGCCTGACCCCTATGCTCCGTCTGACTGTTCATACCCTCCACACGTCCGCCCCTCCCGCGGCTCCTCCACCCTCCTGTGGGCCGGGCCAGTCATGGGCTGTCCGGTTGCACACAGACTCAGAGCTGCTGGAGGCTGACGGCTCCACCCTGCACGAGCTGGCCAGCATGGTGGCTGAGCAGGCTGGCCTGGAGAACAGGGGCCAGATAGGGCAGCTGGAGGGCCACTACCTGCTCTGTGCCGGCCCCGAGGAGGAGGGCAGAGCGGGGGACGTGCTGGCAGCCCACCCTCATGTGCTCTGGCACTCCCAGGAGCAGGTCCTCAGCCGCTCCAAGAGGGCAATGGCCTTCAACGACCCCAGATACCCCTTACAGTGGCACCTGCACAACGATGTCAGGGAGGGCATGGACATCAATGTGACTGGTGTATGGGAGCGCAACATCACAGGGACAGGGGTGACAGTGGTGGTCGTGGATGATGGGGTTCAACACACCCTCCAGGACATTCAGCCAAACTATAGTCCAGAGGGCAGTTATGACTTGAACTCCAACGACCCGGACCCCATGCCCCACCCGGACGCCCTCAGTGACAACCACCACGGCACGCGCTGCGCCGGGGAGATCGCCGCCGTCTCCAACAACAGCTTCTGTGCTGTGGGCGTGGCCTATGGCAGTAAAGTGGCAGGTATCAGAGTCCTGGATGGGCCGCTCACAGACAGTATGGAGGCGGTGGCTTTCAACAAGCACTACCAGATCAACGACGTCTACAGCTGCAGTTGGGGTCCTGATGATGATGGCCGCACTGTTGATGGACCACACCCCTTGGGCAAGGCGGCGCTGCAGCACGGCGTGATTGCTGGCAGAAGGGGCTTCGGCAGTATCTTTGTCGTCGCCAGTGGCAACGGAGGCCAGTACGAGGACAACTGCAACTACGATGGCTATGCTAACTCAATCTACACTGTTACCATTGGAGCAGTAAATGAGGAAGGGAAGATGCCCTTCTATGCTGAGGAGTGTGCCTCCATGTTGGCTGTCACCTTCAGCAGTGGGGGCAGAACGCTACGCAGTATTgtGACGTCAGactggtcactgcagcagggcACGGGCTGTACTGACGGGCACACGGGCACCTCGGCGGCGGCACCCCTGGCGGCTGGCATGGTGGCTCTGATGCTGCAGGTCCGGCCCTGTCTCACCTGGAGAGACGTGCAGCACATCATCACCTACACAGCCACACAGtatgaTGTGCAAGGGGATTGGAAAATCAATGGAGCGGGCTTCCACCACAGTCACCAGCACGGCTTCGGCCTGCTCAACGCCTGGCGGCTGGTCAACGCTGCCAAGGTGTGGGAGATGGTGCCGTTCCTAGTGTCCTATCAGAGCCCAGTGCTGAAGGAGGAGGAGCTTATCCCAGCCTATCCAGATCAACTCAACCTAACCTGGAACGTCACTGCAGCTGACCTCAGGCAGTCCGGGATGCAGACCTTGGAGCACGTGTCTGTCACCTTGACGATGGTCCATTCTCGCCGTGGCAACGTGGAGATTGTACTACTCTGCCCCAGTGGCATGACCTCACTCATCGGGGCGCGCCGTACTCTGGACATGGATACCTCTGGTTACTCAGACTGGACGTTCTCCACTGTGCGCTGCTGGGGGGAGAGAGCCGAGGGCCAGTACAGGCTGCAAGTCTCtgaccacaAAGACCCTGTGTTGACCCTGGGCTCTCTAAAGCACTGGAAGCTCACTCTGTAcggctcctctctgtccttcgaAGAGGTCAAGGAGAGACAGAGTGTAGTGGAGGAGGCTATGGGGGGGCAGTATCTGGACAGCAGTttctccctgccctgtcctgcagGCATGGACATCCCCTCTGAGACGGTCAGCCCGTTCACCTCCAAGAGCCTCAAGTCTCTGCTACTGCTGGGCTGCTTCGCACTCTTCTGGTCCTTGTACTACACCCTGGAGGTGACCCTGGCCAACCTGGACTTTAGGGGACTGTGTCGGCGGGGCAGGGGGACGCGGGGCTCCCGCGGGGGCCGGGGGAGAGGCACTGGAACTCTGGGGGACAGCTCTGAGCTGGAGATGCAGAGTGTGTTGGACTCAGAGTACAAGGTGCCCTTCATCACTGGCGACACTGCCACATAACACTGGAGAAAACCTCTGTCCTTTCTCCTTACGACATCCCACCCGCTGCTCAACAGTCTGGGCCTGGCACCAGTGGGGCCAACTGAACTGGAGACTGAACTATGTGGGCTGGAACTGTGTGCTCACTGGCCAACCCATTGCTCCCCAAGCCTGTGGCCTTTTATCAGTGTTGCAGTGCCCCATGTGTGTGAATAAGTGTACTGCGGTGGAGCAACCTAAACCCCCTGAATCTCTCAGGACCCTCCGGTCTCACCTAGCAGTGCTATAGAGGTGGTAGTTTGACTTGGTCTTTGGGTTGGAGTATATATCACTAGTTTGGTTCAGTCCCATACCTGGGTCTTTTAGTGTGGGACTAGGTGTGCCGGACAACCAGACAGAGCATCACTCCCAGGGCGGTTTCCTGGACAACCAGACAGAGCATCACTCCCGGGGCGGTTTCCTGGACAACCAGACAGAGCATCACTCCCGGGGCGGTTTCCTGGACAACCAGAAAGAGCATCACTCCCGGGCTGGTTTCCTGGACAACGATTAAGGCTAATCTTGGTCAGGATTAGGTTTAGTCTGGGTTTATGGCAAACTTCTAAAGTTTATTAGGTGTGTACCATGGGAAGGCATtacaatgctgtgtgtgtgtgaatgagtttTAAAATGTAAATGGTGTTTGGTTTTGAGGATGTGTGTGAGTGCTCTTGCTTATGGTttaagttatttttttaaattaaaggtGTTACTTTTATAAAAATGttgcattgtaatttcagaaaatgtccataatacactgtgtacaaaacaaacaccttcctattattgagttgcaccctcccttttgccctcagaacagcctcattttgtcggggcatggactctacaaggtgtcaagcattccacagggatgatggcccatgttgaTGCCAATtattcccacagttgtcaagttgactggatgtcctttgggttgtAGAACAAGTTGCTTTCGGTTTTgatccaccagcttcaaacagctgtaaaataatgtattttttgcaACGATTGAGATTGTACAATGGTTCCCAACATTATTCAATGCTTGTTTTTGCACATAAATTGAGCGAACAGTGTAGAATTTGAGCAGCTAGGAAATAAGCAATTTCCACTAGATAAGTCAGAACAGCTTTCCTATTTTAACAGATGCCGTTCTGGTGGGAGATTATCACAGGTACGATAATATTGTGAAACACTATTAGCGACAGATATTTGatggacattttctgaaattacaataCAAAAAATAAATCCTCTGTGTAGAAACTTTAAAGCTACAATATATAACTATTTGGGTgaactgaccaaattcacatagaaatgtgagataTTTAATTCCTATTGAAAGCAGtataagaagcagtagatctgttctatgtgtgctatttctatgcttcccattctgaagttttgtttttgcttcttttgcttttggttttggacaccaacttcaaacagctgaaaatacaatatttttggttatggaaaatatatttcacaacgacttagatggtacaatgattctctacacaatggcggttttgtcacaaactgaaattaggggGACTATTTTAGCAaacaggaaatggtggagcgatttctgcatagtgcaccttttTAACTTAATTATTTTGTAAACAGACCTCCCGTTTGGGCGTGGTGGTTTTGGAATGTTATTTTGTGCAGACTATATACATTTTTCTGGTACTTGAGCTTGATTTGGAGGTTGAAGATTTGGAGGTTGAAGATTTGGAggttgttttaattttttttgtatcAACTGTAATATGTTACAATCAACAATATTTCGGAgtttgattttttttaatgaactGAAACAAAGATTTTGTGTTTACTGGACTAAACTGGAAGCCTGTTCCAGTCACAGCTTGACTGAGTAAAATGAATTGGAGTTTCAGGCTGGATCATTCCCATCATTTCCCTTCCAATCATACTAGAGGAATTTAGGACGAAGTCAGTGCTATCGTAGGCGTGTTTTGGACTTCTAACCCCTTTTTTAAACATTGTCTGACCTACAACAGCTGGGTTGTTgcattagtctgtgtgattaacgggggttGAGGTAGAGTGGTGTTTGAGACACGGGCGGATCCCGAAAAAATTTTATTCTCACAAAAAACGTGTGAGCGACAATCTATTAAAAGCTGACCCTAGTCGTTAGAAGGCAAgaggttcttctacatagatctttggaaatcccaggacatagtctTATACTGTAATAAGCTCATATAGTTTGTCACAAACTCTAAACTTGTCACTGACTAATTGGATATTCATTTCCCACTGAGCAAACAATTTCTGTACTTACAGCATTCTTATTCATTTATGCATTTTTTGCTTAACGATCCTTATTTGTGCATTgacatttgtcaataaaactcatgGATGCAAGTA

Function

NR:

description
proprotein convertase subtilisin/kexin type 7-like

GO: NA

KEGG:

id description
K08673 PCSK7; proprotein convertase subtilisin/kexin type 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587611.2 True 4825 mRNA 0.50 16 12374563 12396767

Neighbor

gene id symbol gene type direction distance location
LOC110507072 LOC106580819 coding upstream 5979 12353557 ~ 12368584 (+)
LOC110507554 LOC106580899 coding upstream 21154 12348385 ~ 12353409 (+)
apoa-i-1 apoa-i-1 coding upstream 28231 12343805 ~ 12346332 (+)
LOC110507553 LOC106580818 coding upstream 70782 12282318 ~ 12303781 (+)
cd3e LOC100499597 coding upstream 181304 12189333 ~ 12193259 (+)
nudt8 LOC106580825 coding downstream 39293 12436060 ~ 12439501 (+)
si:ch1073-280e3.1 bfc2-b coding downstream 52179 12448946 ~ 12461330 (+)
LOC110507560 LOC106580827 coding downstream 69790 12466557 ~ 12475236 (+)
LOC110507563 LOC106580829 coding downstream 185489 12582256 ~ 12593139 (+)
LOC110507566 LOC106580832 coding downstream 298134 12694901 ~ 12706764 (+)
G2051958 NA non-coding upstream 32497 12307511 ~ 12342066 (+)
G2052014 NA non-coding upstream 60586 12313328 ~ 12313977 (+)
G2051940 NA non-coding upstream 139615 12221691 ~ 12234948 (+)
G2051936 NA non-coding upstream 158338 12214128 ~ 12216225 (+)
G2051996 NA non-coding downstream 1745 12398512 ~ 12402555 (+)
G2052075 NA non-coding downstream 66848 12463615 ~ 12463855 (+)
G2052088 NA non-coding downstream 87036 12483803 ~ 12487123 (+)
G2052080 NA non-coding downstream 92703 12489470 ~ 12515979 (+)
G2052101 NA non-coding downstream 116867 12513634 ~ 12519150 (+)
G2051018 LOC106580809 other upstream 236764 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1380975 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 1596196 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 1791478 10494894 ~ 10583085 (+)
LOC110507524 LOC106612657 other upstream 1957268 10391240 ~ 10417311 (+)
G2053443 NA other downstream 581760 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 1157973 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 2428753 14825520 ~ 14841123 (+)
G2056256 NA other downstream 3200266 15597033 ~ 15597651 (+)

Expression


Co-expression Network