si:ch1073-280e3.1 (bfc2-b)


Basic Information

Item Value
gene id si:ch1073-280e3.1
gene name bfc2-b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12448946 ~ 12461330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124201.1
AGACACCAACAGAGACGGAAAGGAGTAAGCACATACTTGTCATGCATGCTGTCACTCTGTTGTTGTGTGCGGCCTTCTCCTTCAGCTCTGTCAAAGAGGTGTGGATGCAGGGGGAAGACTACGGGGACTATGAGGATGAACAGCCCCAGAACTGTTCCATCGCTGAGAAGATCAGAGGCGGCAACGTGTCCTACTCTCAGGCAGGTACCGAGGGCAGCGTGCTGACCTATCACTGTAAGGCAGGACACTACCCGTACCCCGTCAGCCAACGGGTGTGCAGCGCCGATGGGGAGTGGTCCTCCATGAGACTGGCCGATGGCAGACGAGTGTCGCGAGCCTCCTGTAAAGagATAATGTGTCCAGGCCAGCTCCAATTGGACCATGGTGAGTTCTggcccagggaacagtggttgAAGCCAGGGGAGAGCCAGAGTTTCTCCTGCCACAGTGGCTTCAGCCTGTCTGGGTCGGCTCAGAGGAACTGCACCTCTCTAGGAGACTGGACAGGCACCATCCCAGTGTGTGATAGCCAAGCTGATGACTGTAAGAACCCAGGTGTGCCCCCGGGTGCCCTGAGGTCCGAGGGCCGCTTCCGGAAAGGGGAGAAGGTCCAGTACCGCTGCCAGATGGGTCTGGACCTGTTGGGCTCAGCCGAGAGGGTCTGTCTGGAGTCCAGGGAGTGGAGCGGCTCAGAGACACGCTGCCAGACCCAGTATGCCTTTGACTCCCCCAGTGCAGTGGCAGAGGCTATGGGAGGCTCTCTGTCTGGAGTCATGGATGTTCTGTCACCTGAGTTCATAAAGAAAAACAAAGGAGTCACCTTTGGTAGGACCCTGCGGGTGGCTGATGGTCGTATGAACGTGTTCATCCTGATGGATACCTCAGGCAGCATCTCCAAGACCCACTTTAACCTGGCCAGGGGCGCCATTGCTGACCTCATACGCAAGCTCGACAGCTACGAGATTGAGCTGAATTTCCAGGTGATCTCCTACGCCAGCCAGGCCAAAGATATTGTGGACATTGTGTCCAGCAATGATGAGCATGTCAGGAGCAACGTAAGGAGTGTCCTAAAGAGACTGGCAGCGTTTGATCACCGAAGCCACGGGAACAAGACTGGCACCAACCTGTACGCTGCTCTGTATCGTGTGTATGAACGCATGGCCATCCTGAGAGAGAGGAACGAGACCCGATTCAGTGAGACGCAGAACGTCATCCTCATTGAAACAGATGGGTACTCCAACACAGGGGGTAGTCCCCTGGCTGTCCTGGCTAAGATCCGCTCCCTGCTTGGATACAGCACCTCGGCTCTCGACCACACCGAAGACAAGCTGCTAGATGTCTACGTGTTTGGTGTTGGGGACAACGTGAATAAGAACGAGCTGAATCTGATTGCCTCTAGAAAGAGACATGAGAAGCACCTGTTCATTCTGAAAGACTACAAACAGCTGGGAGAAGTGTTCAACAGCATGATCAGTGATAAAAGTGTGACCATGTGTGGGGTGGCACAGGAAGATGTGTCAGAGAATCAGGAGGTGTTTGGGCCCACCAAGAAAGCCTATACCAGGCCGTGGCATGTCAATGTCATCACAACTGGCGTTAAGTCTGAGACCTGCCAGGGATCCATCGTGACCCAGAACTGGATCCTGACCGCAGCTCACTGCTTTTCTGCCATCAGATTTGAGGGGAAAGTGGACCAAGAGAAAGTGACTGTGAAGCATGGTTATGGAGGAAATAAGGCAGCAAAGGTGCTGTTGGTGATCTCGCACCCACAGTACAACGTTAACGGACTCAGCCACAAGAAGGTGAAAGAGTTCTATGACTACGACATTGCTCTGGTCAAGGTTGAAACAATCAAGCTGTCATGGACGGCGAGGCCCATCTGCTTGCCGTGTACCAAGCCTGCCAACCGAGCCATGAAGATGAGTCCCAACTCCACCTGTGAACGACACGAGAAAGCCCTGCTACCCATGGAGGAGACCAGAGCCTACTTCATCAACAAGGGGGCTACAGTCAAGGATGCAAAACGCAAgcaaacacacattcatacagggagtaagAGGcctgactgtattaaacaggCTGAGAACACACTTCTAACTCCTCACGATGCAACTCTGAATGAATACGTGCCAGACAGGTTTCTGTGCTCGGGCGGATCTGCCGATCATATAGATGCAGTAACTTGCAAAGGTGACTCTGGAGGCGCTCTGTTCCTTCTTAACAGACTGCGGTATTTTCAAGTGGGAGTAGTGAGCTGGGGCACCAAGAACGTGTGTGAGCCACAAGACAGTAGTGACAGGCCCCCTCCTGATGCAAGGGACTTCCACATTAGTGTCTTCCATTTGCTGCCATGGTTAAAACAGCACCTGGGGACGGAGCTGGAGTTTCTACCTATGGACGACTGAGTTTCAACTTGGATTCTCACAAAAAGCTTAAAATATTGATTTAGTAGTGCCAATATAGGAAGGTGGCTTAATAGCAGATAAAGATGCCTTTCCGTTTCCCTACTTTACAGAATAGGACCCATTGTAAAATGAATCAAATTAATAACAATCTATTAAAATATAAAA

Function

NR:

description
complement factor B/C2-B precursor

GO:

id name namespace
GO:0006956 complement activation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124201.1 True 2570 mRNA 0.52 18 12448946 12461330

Neighbor

gene id symbol gene type direction distance location
nudt8 LOC106580825 coding upstream 9445 12436060 ~ 12439501 (+)
pcsk7 LOC106580820 coding upstream 52179 12374563 ~ 12396767 (+)
LOC110507072 LOC106580819 coding upstream 80362 12353557 ~ 12368584 (+)
LOC110507554 LOC106580899 coding upstream 95537 12348385 ~ 12353409 (+)
apoa-i-1 apoa-i-1 coding upstream 102614 12343805 ~ 12346332 (+)
LOC110507560 LOC106580827 coding downstream 5227 12466557 ~ 12475236 (+)
LOC110507563 LOC106580829 coding downstream 120926 12582256 ~ 12593139 (+)
LOC110507566 LOC106580832 coding downstream 233571 12694901 ~ 12706764 (+)
LOC110507570 LOC106580836 coding downstream 259539 12720869 ~ 12742117 (+)
LOC110507572 LOC106580837 coding downstream 288187 12749517 ~ 12752428 (+)
G2051996 NA non-coding upstream 46391 12398512 ~ 12402555 (+)
G2051958 NA non-coding upstream 106880 12307511 ~ 12342066 (+)
G2052014 NA non-coding upstream 134969 12313328 ~ 12313977 (+)
G2051940 NA non-coding upstream 213998 12221691 ~ 12234948 (+)
G2052075 NA non-coding downstream 2285 12463615 ~ 12463855 (+)
G2052088 NA non-coding downstream 22473 12483803 ~ 12487123 (+)
G2052080 NA non-coding downstream 28140 12489470 ~ 12515979 (+)
G2052101 NA non-coding downstream 52304 12513634 ~ 12519150 (+)
G2052104 NA non-coding downstream 68059 12529389 ~ 12529624 (+)
G2051018 LOC106580809 other upstream 311147 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1455358 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 1670579 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 1865861 10494894 ~ 10583085 (+)
G2053443 NA other downstream 517197 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 1093410 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 2364190 14825520 ~ 14841123 (+)
G2056256 NA other downstream 3135703 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3608240 15776205 ~ 16131560 (+)

Expression

si:ch1073-280e3.1(bfc2-b) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
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si:ch1073-280e3.1(bfc2-b) Expression in each Bioproject

Bar chart with 20 bars.
si:ch1073-280e3.1(bfc2-b) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 15000.
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Co-expression Network