LOC110507560 (LOC106580827)


Basic Information

Item Value
gene id LOC110507560
gene name LOC106580827
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12466557 ~ 12475236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587625.2
CAACTCCAGTCTCTGGACCACGACCTAGGATCACGGCTCGGGCCATCGGCTAGTGGGACACAAACTCCGGATGCACTGACTACTGTGCACTGCTGCATCTGCAAAGACAAGAGACAGTAGTGAACAACAAATAACACTGTGCCCCAGGTTTGCTCAGTAGAATGTAACACAGCTTGCTGCTCTGCTTGCTCTGAACTCCATTTTTGGCTTGACACTGATCTTCAGCTGTTGGTTTTCCTTTGTTTCTAGGATCGTCAGCCCACAGACTAAGCCATGACCCAAAGCAGCATGTTACGTGAGGAGGCCTACACTGCCGTGATGAGGGGGGTCAAGGAGCTGGACCTCAACGGGCCAAACATACCCAGCGACTTAGTACTGATCGGCGACCAAGCCTTCCCACTGGCCATGAACGCCTGTGGCCAGGTCCTGATGGCTGCCTCATTCTACGGCCGAGGCCGGGTGGTGGTGCTGGGTCACGAGGGTTACCTCACTGCATTTCCTGCCCTGGTGGAGAATGCGCTGACCTGGCTGACAGGCTCGTCCTGTGACAGCACGACCGTGGGCGTCCACCAGAGCTGTAAGGCCGTGGCCGACAATCTGAGCTACTCCAGCCTCCAACCCAAGGTAGGGGGCTTCTGCGAGGGCCTGGGAGTGTATGTGACAGATGCGTACTGCGTGGGCCCAGAGGTGAAGGAGCTGGTAGAGTTCCTGAAGGCGGGAGGTGGGCTGCTGATGGCTGGCCAGGCGTGTAGCTGGGCCGAGGGACCCAAACAGAACACCCTGCTGGGTTTCCCTGGGAACAAGGTGTCCAGCGTGGCTGGCATCTACTTCTCGGAGCACCCTGGGGAGCTGGGTACTCTCCCTGTGCCTCCACAGATCCCTTCCAGCTGGCTGGCTGTGGCGATGAGCATGGACTTCAAGGATGACCTGGAGTTCCTGCTGGAGGGCGTGACTGAGTTTGATATCCAGGGCGGGGCTATTTGCTCAGAGGTGCTGGTACACGGCCCTCTGGCATTCCCCATTGGCACCACAAAGGACGGCAGGGCCTTTCTGGCCGGGGCATACTACGGTCAGGGCCGAGTCATCGTGGTCACCCACGAGGGATACTTGGGCCGAGAGCAGATGTCCCCCTTCATGCTCAATGCCGTGCGCTGGTTAGATCAGGGTCGTAACGCCTTGGTAGGTGTCTTGCCCCAGCTCGGCGCCGCCCACACCCTGCTGAGCAAGTCTGGCCTCCGCTGTGAGAAGAGCGGCTTCAGGAAGGAGCTCAGCGTCTATGTCTGCACCTCCTACAGCGACGCCCAGGCCGACGAAATCCAGGACTTTGTGGCCGAGGGCGGGGGCCTACTGATCGGGGGCCACGCCTGGTACTGGGCCCAGGCCAACCCGGGCCACAAAGCCATGACAGGGTACGCAGGCAACCGCATCCTCAACAAGATGGGCCTCAGCCTGTTGGGGAACACTCTGGATGCAGGCTGCTACAAGGCCCCAGTCCCGGGTCAGACCTGCTCTGAGGGCTTCCACTTCCGCCACCTGCTGCGCCGCTTTGCCGGTCACGTGACCCAGGGCGAGGCGCTGACGGAGCATGAGGAGGCCGGTCTGAAGAAGCTTGGCGGTGACTGTGCCAATTACCTGCACATGCGGGCGCACGATTGTGCCTCGTACACCTCGGTGGTGGCCATGCTCACTGACGTGCTGAAGGAGGCGGGCATCCCCCAGGTGTGCCACAGCTGTCCGGTGATAAGCGCCAAGGACCACCTGCTGCTCAGTGTAGGCGCGGAGGTGTACAAGGTGTGCCAGGACCCAGACGCCCTACTGCCTTACCTGATCAAGGACCAGCCCATGATGCCTGCCTTGTCCAATGCCAGGGTTAGGATCAACTGTAATACAGCAGGCGGAGAGGAGTGGCTCAGCACTGGTCTGTTCCTTTCCCCTGGGATGAGGACGTACATGGCCATGCCACCACAAATCGTCAACCAGGGCTGGAAGGTCCAGATAGGCTGTCAGACTGACAACATTGGGAATTCGAACGAGCTGAAGCGAGCGCCAGTGGTTCATGAGCGCTTCCCCATAGACTCAGAGATGATGCAGGTGTGGAACCTGTGGGGCGGTCTCCTCTATCTCATCGCCCCTCCTAAGACCCAggtggagggggtggaggtcATTATTCAGGGGGCTGTGCCGGCCCCCTACTACAAGACTGgGGTGACCACGCCTGCAGACTGGGCAGTTCTGCGGACTGCCCCGtccccctgggcagagatggagtTTGAGAACATCATCCTGACCGTCCACTCCGACGTGGTCCGAGGTCTGGATCGGCCTGACCTGGTGGCAGCTCTCTGGGATGACATCATGAGGGGAATAGCTGACCTGGCTGCCGTCCCCGCCAAGTTCCCACGCAAGGAGCGCTTCGTGGCCGACGTCCAGATTTCCCATGGTTTCATGCATGCAGGCTACCCTATCATGATACAATCCTCCTCCGCCCCAAACCTGGTGAACCCTGTGGCAGCCCGCAGCTCGGGCCTGTGGGGAGCCATCCACGAGCTGGGTCACAACCAGCAGAGAGGAGTCTGGGAGTTCCCCTCGCACACCACTGAGTGCACGTGTAACCTGTGGTCAGTGTACGTGCACGAGGAGGTGTTGGGGGTGAAACGGGATCAGGCCCACCCCAACATGGCGCTGGCCAACCGACAGAGCCGTGCCGAGGGGTACGCTAAAGGGGGCAGGAATCTGGCCAGCTGGGACATGTGGGTGGCACTGGAGACCTACATGCAGCTCCAGGACCAGTTTGGCTGGGACGCCTTCAAGAAGGTGTTTGCTGCCTACCATACCATGCAGAACGTGCCCAAAGACAACCAGGGAAAGATGAACCTGTATGCTGAGACCTTCTCCCTGGCGGTCGAGAGGAACCTGGCTCCTTTCTTCAAGGCCTGGGGCTGGCCCATTGAGCCCGCTACAGAGGAAAAGCTCTCTAACATGCCGGTGTGGAGCGACCACCCTATGGCCCAGTATGGCtgacctataggggaggtcaCACCCTTAAATTGGGGGTCAGAGGTCACAGGTCAGGGATTGCTGGTGAAGGGTAGGTACCGTCTGGTGACGGGTTAAGGTAAAGGAGTGTTGATTAGGACTTTGCTGGCCTGGTGTAGAAATGCTACTGCAACAATCATGGTTGCGTCTACTGTGCaaagaaataaataattataacgGTTTTTGAAGTCATCACAAAGGGCTGGCTGAGGAGATTGGGTCTATTGTTGGCTATAAATGCAATTGTATATTCTAGTGCACTTCAGAAGAGTCCGCGCAAGTGCCTTATTCATCATAAGTCGGATGTTTTACAGGGTCTATTTCATTCCAAATGTAGTTATGTGCCCAATAAAGCACCTTATTCTGAA
>XM_036965173.1
CGACCTAGGATCACGGCTCGGGCCATCGGCTAGTGGGACACAAACTCCGGATGCACTGACTACTGTGCACTGCTGCATCTGCAAAGACAAGAGACAGTAGTGAACAACAAATAACGATCGTCAGCCCACAGACTAAGCCATGACCCAAAGCAGCATGTTACGTGAGGAGGCCTACACTGCCGTGATGAGGGGGGTCAAGGAGCTGGACCTCAACGGGCCAAACATACCCAGCGACTTAGTACTGATCGGCGACCAAGCCTTCCCACTGGCCATGAACGCCTGTGGCCAGGTCCTGATGGCTGCCTCATTCTACGGCCGAGGCCGGGTGGTGGTGCTGGGTCACGAGGGTTACCTCACTGCATTTCCTGCCCTGGTGGAGAATGCGCTGACCTGGCTGACAGGCTCGTCCTGTGACAGCACGACCGTGGGCGTCCACCAGAGCTGTAAGGCCGTGGCCGACAATCTGAGCTACTCCAGCCTCCAACCCAAGGTAGGGGGCTTCTGCGAGGGCCTGGGAGTGTATGTGACAGATGCGTACTGCGTGGGCCCAGAGGTGAAGGAGCTGGTAGAGTTCCTGAAGGCGGGAGGTGGGCTGCTGATGGCTGGCCAGGCGTGTAGCTGGGCCGAGGGACCCAAACAGAACACCCTGCTGGGTTTCCCTGGGAACAAGGTGTCCAGCGTGGCTGGCATCTACTTCTCGGAGCACCCTGGGGAGCTGGGTACTCTCCCTGTGCCTCCACAGATCCCTTCCAGCTGGCTGGCTGTGGCGATGAGCATGGACTTCAAGGATGACCTGGAGTTCCTGCTGGAGGGCGTGACTGAGTTTGATATCCAGGGCGGGGCTATTTGCTCAGAGGTGCTGGTACACGGCCCTCTGGCATTCCCCATTGGCACCACAAAGGACGGCAGGGCCTTTCTGGCCGGGGCATACTACGGTCAGGGCCGAGTCATCGTGGTCACCCACGAGGGATACTTGGGCCGAGAGCAGATGTCCCCCTTCATGCTCAATGCCGTGCGCTGGTTAGATCAGGGTCGTAACGCCTTGGTAGGTGTCTTGCCCCAGCTCGGCGCCGCCCACACCCTGCTGAGCAAGTCTGGCCTCCGCTGTGAGAAGAGCGGCTTCAGGAAGGAGCTCAGCGTCTATGTCTGCACCTCCTACAGCGACGCCCAGGCCGACGAAATCCAGGACTTTGTGGCCGAGGGCGGGGGCCTACTGATCGGGGGCCACGCCTGGTACTGGGCCCAGGCCAACCCGGGCCACAAAGCCATGACAGGGTACGCAGGCAACCGCATCCTCAACAAGATGGGCCTCAGCCTGTTGGGGAACACTCTGGATGCAGGCTGCTACAAGGCCCCAGTCCCGGGTCAGACCTGCTCTGAGGGCTTCCACTTCCGCCACCTGCTGCGCCGCTTTGCCGGTCACGTGACCCAGGGCGAGGCGCTGACGGAGCATGAGGAGGCCGGTCTGAAGAAGCTTGGCGGTGACTGTGCCAATTACCTGCACATGCGGGCGCACGATTGTGCCTCGTACACCTCGGTGGTGGCCATGCTCACTGACGTGCTGAAGGAGGCGGGCATCCCCCAGGTGTGCCACAGCTGTCCGGTGATAAGCGCCAAGGACCACCTGCTGCTCAGTGTAGGCGCGGAGGTGTACAAGGTGTGCCAGGACCCAGACGCCCTACTGCCTTACCTGATCAAGGACCAGCCCATGATGCCTGCCTTGTCCAATGCCAGGGTTAGGATCAACTGTAATACAGCAGGCGGAGAGGAGTGGCTCAGCACTGGTCTGTTCCTTTCCCCTGGGATGAGGACGTACATGGCCATGCCACCACAAATCGTCAACCAGGGCTGGAAGGTCCAGATAGGCTGTCAGACTGACAACATTGGGAATTCGAACGAGCTGAAGCGAGCGCCAGTGGTTCATGAGCGCTTCCCCATAGACTCAGAGATGATGCAGGTGTGGAACCTGTGGGGCGGTCTCCTCTATCTCATCGCCCCTCCTAAGACCCAggtggagggggtggaggtcATTATTCAGGGGGCTGTGCCGGCCCCCTACTACAAGACTGgGGTGACCACGCCTGCAGACTGGGCAGTTCTGCGGACTGCCCCGtccccctgggcagagatggagtTTGAGAACATCATCCTGACCGTCCACTCCGACGTGGTCCGAGGTCTGGATCGGCCTGACCTGGTGGCAGCTCTCTGGGATGACATCATGAGGGGAATAGCTGACCTGGCTGCCGTCCCCGCCAAGTTCCCACGCAAGGAGCGCTTCGTGGCCGACGTCCAGATTTCCCATGGTTTCATGCATGCAGGCTACCCTATCATGATACAATCCTCCTCCGCCCCAAACCTGGTGAACCCTGTGGCAGCCCGCAGCTCGGGCCTGTGGGGAGCCATCCACGAGCTGGGTCACAACCAGCAGAGAGGAGTCTGGGAGTTCCCCTCGCACACCACTGAGTGCACGTGTAACCTGTGGTCAGTGTACGTGCACGAGGAGGTGTTGGGGGTGAAACGGGATCAGGCCCACCCCAACATGGCGCTGGCCAACCGACAGAGCCGTGCCGAGGGGTACGCTAAAGGGGGCAGGAATCTGGCCAGCTGGGACATGTGGGTGGCACTGGAGACCTACATGCAGCTCCAGGACCAGTTTGGCTGGGACGCCTTCAAGAAGGTGTTTGCTGCCTACCATACCATGCAGAACGTGCCCAAAGACAACCAGGGAAAGATGAACCTGTATGCTGAGACCTTCTCCCTGGCGGTCGAGAGGAACCTGGCTCCTTTCTTCAAGGCCTGGGGCTGGCCCATTGAGCCCGCTACAGAGGAAAAGCTCTCTAACATGCCGGTGTGGAGCGACCACCCTATGGCCCAGTATGGCtga

Function

NR:

description
TRPM8 channel-associated factor homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587625.2 False 3404 mRNA 0.58 9 12466557 12475236
XM_036965173.1 True 2887 mRNA 0.61 8 12466577 12474853

Neighbor

gene id symbol gene type direction distance location
si:ch1073-280e3.1 bfc2-b coding upstream 5227 12448946 ~ 12461330 (+)
nudt8 LOC106580825 coding upstream 27056 12436060 ~ 12439501 (+)
pcsk7 LOC106580820 coding upstream 69790 12374563 ~ 12396767 (+)
LOC110507072 LOC106580819 coding upstream 97973 12353557 ~ 12368584 (+)
LOC110507554 LOC106580899 coding upstream 113148 12348385 ~ 12353409 (+)
LOC110507563 LOC106580829 coding downstream 107020 12582256 ~ 12593139 (+)
LOC110507566 LOC106580832 coding downstream 219665 12694901 ~ 12706764 (+)
LOC110507570 LOC106580836 coding downstream 245633 12720869 ~ 12742117 (+)
LOC110507572 LOC106580837 coding downstream 274281 12749517 ~ 12752428 (+)
LOC118944739 NA coding downstream 307020 12782256 ~ 12791115 (+)
G2052075 NA non-coding upstream 2702 12463615 ~ 12463855 (+)
G2051996 NA non-coding upstream 64002 12398512 ~ 12402555 (+)
G2051958 NA non-coding upstream 124491 12307511 ~ 12342066 (+)
G2052014 NA non-coding upstream 152580 12313328 ~ 12313977 (+)
G2052088 NA non-coding downstream 8567 12483803 ~ 12487123 (+)
G2052080 NA non-coding downstream 14234 12489470 ~ 12515979 (+)
G2052101 NA non-coding downstream 38398 12513634 ~ 12519150 (+)
G2052104 NA non-coding downstream 54153 12529389 ~ 12529624 (+)
G2052105 NA non-coding downstream 55730 12530966 ~ 12531207 (+)
G2051018 LOC106580809 other upstream 328758 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1472969 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 1688190 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 1883472 10494894 ~ 10583085 (+)
G2053443 NA other downstream 503291 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 1079504 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 2350284 14825520 ~ 14841123 (+)
G2056256 NA other downstream 3121797 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3594334 15776205 ~ 16131560 (+)

Expression


Co-expression Network