LOC110507577 (LOC106580842)


Basic Information

Item Value
gene id LOC110507577
gene name LOC106580842
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12817186 ~ 12855301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587648.2
agggagtgggcaggtggagaaggtggagacagagagtgtCAAACTGTGAGGGGAAACTAGATTAAGGCAGAGAagcagcagagggagggagaagaagaagagctaTCATTCCTCTAGCACGCTGAGAGAAACCAGTGAGGAGCTTTCCTTAttcactctcgctctctgccagagtgagagggggagagcgagagagtaaacgagagagagagagagctatactACTCCACCGCTGACGGTGTGAACACaacgaggagagagggagagggagagagaggcagagaagcacAAGACTAgccacagggaaggagagagagacaggacggaggagagacagagtggagggagggaagaggaggatgagggaggagtggagagagaagacagacgcTGATCTTTGACTGTTGAGGACCGAGTGCGAGTGTGTGAGCGTGAAGGAGTGTGCTTGTGAGACTGGGTGCGATGGATCACTGTTCCTGCACACTGTAAGTCTCAGTGCATGGCAGGGCATTTAGAGTGTGTGAGTTTGGTTTCATTGTGTTGGGTGGTGTTTTATCAGACATAGCACAGTGGCTGAGGGATTACGACAGCTGGGGAGAGAGTGTGTCTACGTGTGTTGTGGTAGCGAGCAggggcagctgtgtgtgtgtgtttgtctgtgtgaaaGAAGCAGGGCAGCTGGAGacagagataggtagagaggccAGGTACACCTAGAGGGCAAGTTCACAAAGAGAGAGAGCCCACGTGAGGAGAGAACAAGTGAAAACAGGGACACCAACTCTGCCACCAGATACAGAGTTTGTATGTGTGCGTCTGCACAGCGGCATACAGAGAAGCACCCGTCCAGTCATCTCAGGTCAGCGCAGCGGGGGTCCAGGGATGTCCATCAGGCAGCTATGGGGGCCCAGTGAGCTGTAGTAGAGGACGCCCTCGGCCCCCAGTCCCACCCAGCAGCAgcgctctctcttcccctccggTGGGTAGACGCACGTGGGCCTAGGGCACCTCAAAGCCCAGAGTGAGGGCCAACAGCGGGGTTCCTGTACCCAGAGGAGTAACCACGGCCATCATGGGGGAGTGGACCATCCTGGAGCGCCTTCTGGAGGCTGCCGTCCAGCAGCATTCCACCATGATCGGAAGgatTCTTCTGACCGTGGTGGTGATCTTTCGGATCCTGATCGTGGCCATCGTTGGCGAGACGGTGTACGAGGACGAGCAGACCATGTTCATCTGCAACACCCTGCAGCCGGGCTGCAACCAGGCCTGCTACGACAAGGCCTTCCCCATCTCCCACATCCGCTACTGGGTCTTCCAGATCATTCTGGTGTGTACCCCCAGCCTGTGCTTCATCACCTACTCTGTGCACCAGTCGGCCAAGCAGCGTGACAGACGCTACTCCTTCCTCTACCCGCTGCTGGAACGTTCGGATTACGGGCAAAGCGGCACCAGGAAGCTTCGTAACATCAACGGCATCCTGGTGCACCACGGCGACGGTGGCGGGAAGGATGAGCATGACTGCATGGAGGTGAAGGAGATCCCCAATGTGCCGCGGGGGCTCACACATGGCAAGAAGTCCAAGCAGCGCCAGCAGGAGGGCATCTCACGCTTCTACATTATCCAGGTGGTGTTCCGTAATGCACTGGAGATCGGCTTTCTGGTGGGACAGTACTTCCTATACGGCTTCAGCGTGCCGGGCATCTTCGAGTGCGACCGTTACCCCTGCTTGAAGGAGGTGGAGTGCTACGTGTCACGGCCCACCGAGAAAACGGTCTTCCTGGTCTTCATGTTCGCTGTGAGTGGCATCTGCGTGCTGCTCAACCTGGCAGAGCTCAACCACCTGGGCTGGAAGAAAATCAAGGCAGCCATCCGGGGCGTGCAGGCCCGCCGCAAGTCCATCTGCGAGATCCGCAAGAAGGACATGTCTCACTTGTCACAGCCCCCCAACATGGGCAGGACCCAGTCCAGCGAGTCTGCCTACGTCTGATGGAGACAGGGCTAAATGCTGGGTAAGTGAGGGGGCAGGGTAGGGAACGAGTGGGACGACCACTCCATTCCGCTCTCTCTTTTTAGTTTTaatggaaagaggaggaggaggaggaggggaagctgCCACGGAATATTTGGTGCATTTTTTTATTACTTTATTATCAGCTGCACCTGTTCTTGTCATACCTTGTCATGTGAATGATGTTTTGATTGGGACGTTCCCAATGGGAACGGGAGCCTTTAAGGAGAGGCTTCTGGCTGTTGTAGGGTTTTCGGGCCAGGGATGGTGAAGGGGACCGAGGGGTTGGCTATGTCATGGTGCTGTTCTGGCTTATTTCATCCATGATGAAGAGAGCAGGAGGGGTCgttaacagagaaagagaggaagagctgTCGCAACGATGATTGACTCTCCACAAGCAGCGTACAGGGAGTCAACTTTCTAGCCTCTCTTTCCTGCTGTGGAGAGAGAATGATGTTCCTCTCAAGCTAGTTCCCAGAGATTacgatgacagagagagacagtgttcggGAGTCCTGGAGCTGGTGCCAGAAGAAGCTGCTGTTTACGTTTTGTCTCCTGGCAAACAATTATTAACACAAACACAAAAAATGTCTCTACTTCTCCGCTGCTGGCACCTGCACCGTTGAGACGGAGGGTGGATGACAGTAATGTCTTCTTGTCCTCTTCTCCTGCGTGTAAACTTTAGAGAGGAACCCAAGGAGGCCACGCATAAACGACACTTCCACAGTCACAAACCGTTCCCCTCCACACAAAAACACCCCTGCGCCGAGCTTCTCTCTCCAGCATTCCAATGTAttgcgtgtgtttgtgactgactgaaagaaagagaaaaatgaagtgaaagagagaaataggagagTAGAAGAGGAACCTTCTCCTTGCACTCTCGACAGAGAGGAACCAGATCATTTGATTACTAATTTAAATGTTTACGATATCATTATTATGAGTTGATTTATTCCTTTCGTGACGAAGTTGGTACCAGCCTTTGGATTTACTTCTTGTTTGAAAGTTCCTGCATATTATTTCATCTTTTAGTTGAGAGAGTATATCAAAATAGATGTATTTATCTTtatggagggaagggagggaggggagggagggggagggcgagGGGAGGCAAAAAAACATGGTTGGGATCATGGGGGTACTTAAAATGTATAAATagccttgttttttttgtttctgATCGATGGAACTGTATTTGTGTCTGAGAGGAGGATTGCAAGAGGTATTTGAAGAAGGCAGGTTTACAAAGCAGTGTTTCTAGAATGAACCAAGTGTTATCATGGATTGTACTCTTGACAGAGAACATGCTAATCTACTGGTTTGTGCTGCATCTCTCTCATCTGTGGTGATCAGCAGGCATGCCTTTAAGAGAAGAGAAAAGATTGAGGAAAATACAAAAGGAAAATAAGTATTGCAGCATGATCCCTGAAGACAGGCGGGAGAACGGCAGACAGAAAGGAACTCTCGTTGGGAAAAGCTCTGTAGCACCAGCAATAAAAACCCAACACACTCGCTCAACACCACTGAAGACAGGGTTCAGCTTTTCTGCAACAGTGGTACACTATAAAAGGGATCCCACATTTACAGCACAATGCCTTTTGACCCTGCAGTGAGGCTAGACacgggaggtggaggggggggggggggggggtgtccttGTTGTGGATGTATTGAGGGAGGGGTGTGCACACTGAGCAGTAGTAGTGTCCATGGCGATGACATTATAAGAAGGCCAAACATGACCAGCGAGGTGCATCACCGTATTGTACAAtgtgcctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcatacGTACGTGTGTGTTCCTTGGTTTATGTCCTGTCCAGAGAGAAAGTCCCCATCAGCATGATTCTGCTTGAGTGAAAATGTTTGGGCCGGAACATTCTCCTGGTGTTCCACCCCAGGATCATATAGGAACCCTGTAATGGTGGTCACCCCAAGCACTGCCCAGGGACACACAGCCTGGAGTGTGTAATGTACAGGCTCTACTAAACACTCTGtaaggagcaggagagagaagagggagaggggggttgcTGGAGACATTGACATCAACAGCATGTGTTCTTTTGGCATGTGCGTCTGGTACACTGTAAAACAGAGTAGGCAGCTCAGGTTGGAGATGTTTGGGTTTACAGTGACACCGGCTGGGCCCGGGCCAAAACAACTTCGCAAGCCAAGCCGAGAAAACAGACATGGGAGAGGAAATATGGCTGGAACCTGGAAAGCCACCAAGCTTCTAGTTGCACATTTGTTTGAAAAGAACAGGAAATGTCCTAAACAGAACGACAGAAAGCCATGACAAAGTCCTCGCTAGTCATTCAATGACAGAGGATTACAACCGCAGAGAGACACGTTTATGGAGATAGAAACCGTTCAGAACTGTCCCCATGTAAGATGGCCGACAAAATGCGGCTCTACGAAGTCAGCCTCTCTAGAGTTGTATCTCTATGTATGAGTCCAGCTATCCTCTCTATCCTCACTGAGCACACTGCTGATGTGGTTGTATAGTCTTACTGAGGTGTGACTGGTGAAGTAGCCAGAGAAAGCTCTTTATTCGTCCAGTCTTGTCTGTGATTAACCCACTGATACTAGTAGATCATCTCTAGTATAGAATTAGTCCGCTTCTTCAGAGTTCGTTGAATGGCCATGGGATTGGATGAGGAGGAGCCTTGTTCTTAGAAGACTGCTGAGAGGGCGTAATAATAGAGGTTACGGCCGGGCTTTCTCTAAATGATCCTGGGCGCTTCTCTTTAAGATAACGGTTTGGGAAGGTTGGTCTGaagtgtagtatagtagtgtacaTGTACAGTCCCCATgtgtctctctcctgctctcctgtctggtctcaTTGAGGGTTATATAACAGGGTTGGGATGAGGACACTTCCCAAAGTGAACACACAGGGTTCTAGTGGTCTAATGGTCTCTCCAGTCTATATGTGAAAATTATGCAATTTTCTTTTCTTAATTTGTTTCCCTTTTTTCTGGCTTGTGGATTCATTTTGTTGTCTTTTGCTCTTTTTTTGTACAGTGATGTAATTGAAAGACCTATCGAAAAAGTTGTTTTTTTTCCTATGTAAAGaacaaaacattttaaatgtaCAACCTGGGGGGGGGTATTGAAATGTGATCACATGTATTGTATCCCTTGCCAAAGTGATATACAAATTACATGGggtttaaaatgtattattttttaagGCATGCACAATGGCTAGAATAAGCATGTTTCTACCTGTTTTTAAAAACTCCAAGAAGAGTTTTTTTTAGTTGTCGTCCAAGCTTTGGAGATAAAACGTGTAATTAAGTCTTGATGTCAAGAATCTCTAATTCTAACTCTTTTACAAGTCAGTACCAAGCCAAGCAGTCATTTCTAAACGGAATAGGGTAGGATTCAGCACTGCTGTTTTTTTACCACCATTTTGAGCTACTTTACCTGCTATAAAAAGATTCCGATTTTTTAAACAACAACACTTAAGATGTGGATACTCTGAATTATACTTGTGTGTACTGTAAGCCACACTTTTCAGGGTAAATAAACACTACATTGACAAAACAGAGGAAACAACATTCCACagtaatgcaaatgaattacGACTGAATTAATTAAGTCTGATGAAAGAAAGAGTGAAGCCCTAAGACACAGTAACATTATGGGGACTGTGTAGCCCTCTGCTTCAGGTCAACACATTGAGGGCTACTGCACATCATACAAACAGTCTCAGGAATTATGCACTTCTAAATGATTAACAATCTTTTAAAACTAGGTTTTTATTCATATTTCTACAATTAATACAACTAAACTTTTCTAAACGCTATCAAACAACATCTGCATCCTTTCTTACACAGGAAACCCATCAGGAAACACCATATAGATAAGGCACATCAAGTATTGTCAATCAGTACACACATGAGAAAGCTAATGTATTACTACATACACATTCTCAAGACTAGTTTGATGGCAAGAAAATCCCTTTAATCTGCAGAGTTACGGCAAAACAGACCCATAACCCTACTTCTGTGGCCACTTCCTTGTATCCAAGCCTAAACCAGCCCCCTTGCCGGAAACGTTGGTGCTATCAACCCTCATCTTGGGTTGCATTGAATCAGTGACAAGGAAGGTCATTTACCAGGCAAGTTCAGATAAATATTTCCGAGGAGATGGAAGCAAGGACCTACAGACAGCTCAAACACTCTTCCAATTGGCAGGAACGGACACCATCTGTGGTGGCAGAGAGCAAGCCCTGGAGGTTGTGACACTATTAAATACCTGCTGTACCATCACTCTAGCGCACATCTACCACCAGCGCCACTTGTCCTAACCTCACATGTAGGGCTGCATTCAAACCAGTGGCATGGGGGGTGTGGAGAGGTAACAGACCCAGGTTTACGTCATCAGGTCTGGCACCGCCCACTCTTGAGACAAAGGGACCCGTCCAAACATTTTAACGAGACCGGCTGTGTTGAAAGTTTTTATAAACAAGGGCTTTATAGTTTCAGCACAGTCTCCTTCATCCCCCCTTCACCATagaaacaaaaacacaacatatCGCTATCCCAATATTTATCTCCCTAACAGAACGTGGTGACCATGTTTGTTGCTCAAGGACCTAATCAAACCTTTAGCCTTGTTGTGCCAATGGGTGATACGCAGTGCTGTCAACTTCACTAGCCTGAAAATGatgcagcacccccccccccccc

Function

NR:

description
gap junction delta-2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587648.2 True 6831 mRNA 0.48 2 12817186 12855301

Neighbor

gene id symbol gene type direction distance location
nop53 LOC106612613 coding upstream 3149 12802441 ~ 12814037 (+)
trnaa-ugc-186 NA coding upstream 21516 12795595 ~ 12795670 (+)
LOC118944739 NA coding upstream 26071 12782256 ~ 12791115 (+)
LOC110507572 LOC106580837 coding upstream 64758 12749517 ~ 12752428 (+)
LOC110507570 LOC106580836 coding upstream 75069 12720869 ~ 12742117 (+)
sirt2 sirt2 coding downstream 20500 12875801 ~ 12880508 (+)
rinl rinl coding downstream 25334 12880635 ~ 12892609 (+)
LOC110507586 LOC106565025 coding downstream 132272 12987564 ~ 12988797 (+)
LOC118944675 NA coding downstream 209990 13065291 ~ 13075518 (+)
LOC110507591 map4k1 coding downstream 342554 13197855 ~ 13216273 (+)
G2053205 NA non-coding upstream 21444 12782380 ~ 12795742 (+)
G2053249 NA non-coding upstream 45549 12771433 ~ 12771637 (+)
G2053243 NA non-coding upstream 62400 12754484 ~ 12754786 (+)
G2053240 NA non-coding upstream 68884 12748034 ~ 12748302 (+)
G2053239 NA non-coding upstream 69367 12747146 ~ 12747819 (+)
G2053382 NA non-coding downstream 19166 12874467 ~ 12924756 (+)
G2053387 NA non-coding downstream 94100 12949401 ~ 12952410 (+)
G2053388 LOC106580853 non-coding downstream 98553 12953854 ~ 12954147 (+)
G2053390 NA non-coding downstream 101437 12956738 ~ 12957782 (+)
G2053439 NA non-coding downstream 113781 12969082 ~ 12969315 (+)
nudt8 LOC106580825 other upstream 377708 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 679387 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1823598 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2038819 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 2234101 10494894 ~ 10583085 (+)
G2053443 NA other downstream 123226 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 699439 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 1970219 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2741732 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3214269 15776205 ~ 16131560 (+)

Expression


Co-expression Network