LOC110507586 (LOC106565025)


Basic Information

Item Value
gene id LOC110507586
gene name LOC106565025
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12987564 ~ 12988797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039983.1
CTCCTGTGAGACACTGTCATCATGTTCAAAATGTGTTTAATCTTATCAGTAGATAGATATTAATGATGGGTCCCAATCCCAATTTAGAATTGCCCACTTAACAGGTTATTTGGTAAAGATCTGTTGATGCAGTGTTTGGTAATTGTGTTACTGAGACACAATGTATTCCTGTATAGTTAAGAGCCCCTAGTTAAGAAGACTAGACACTACTATGTTTATTGTTATTTATGGGCCGCATCATTCTTGTTTCTCACTTCAGTCTTTCATCACACTTATCTTCACAGATGGTGTTAAAGCACTGTGTTGCAGGAAGTGCTCTGTGCAATCATCTGGTGGCCCTTCTTTACCAGACAGCACACTACTCTCAACTAAACATTCCTGCTGCACCACCAGTTCACAGctgcacagacacagatacagaacAGCGTTGGCACAAGCCAAGAACTCTTGTGAGTATATCAATATCCATAAAAAAATGCACCTGAAAAGTATTCAGCCTATGTAACAGTAAATCCTTGTTAATTAGGGTGTGAAGCCAGGTCCGGTTGGTGGGATAGAGTTCTGTAAACCTACTAACTCGTGGGTCCGGCTGGTGGGATAGAGTTCCGTAAACCTATTAACTCGTGTGCTGATGGAATAAGAAGTTCTCTCTACAAAGCACTCAATGGATACATGCCTGACATGGACCTTCTCCGCGTCT
>TU2348594
GTTAAACATCTCCTGTGAGACACTGTCATCATGTTCAAAATGTGTTTAATCTTATCAGTAGATAGATATTAATGATGGGTCCCAATCCCAATTTAGAATTGCCCACTTAACAGGTTATTTGGTAAAGATCTGTTGATGCAGTGTTTGGTAATTGTGTTACTGAGACACAATGTATTCCTGTATAGTTAAGAGCCCCTAGTTAAGAAGACTAGACACTACTATGTTTATTGTTATTTATGGGCCGCATCATTCTTGTTTCTCACTTCAGTCTTTCATCACACTTATCTTCACAGATGGTGTTAAAGCACTGTGTTGCAGGAAGTGCTCTGTGCAATCATCTGGTGGCCCTTCTTTACCAGACAGCACACTACTCTCAACTAAACATTCCTGCTGCACCACCAGTTCACAGctgcacagacacagatacagaacAGCGTTGGCACAAGCCAAGAACTCTTGGTGTGAAGCCAGGTCCGGTTGGTGGGATAGAGTTCTGTAAACCTACTAACTCGTGGGTCCGGCTGGTGGGATAGAGTTCCGTAAACCTATTAACTCGTGTGCTGATGGAATAAGAAGTTCTCTCTACAAAGCACTCAATGGATACATGCCTGACATGGACCTTCTCCGCGTCTGCCAACGTATGCCAacttttctccacttcctgcccCTCTTGTGACAACAATGGAAAAGTCAGCTGACGTGCCCCTGGTTGAGTCCTCCTTTGGGCCAGTGCAATGCGGCAGTGTTCTGTCCTATCAGCTTCCACAGCCAAAGACCCATGAAATTGTGAAGATTGCTGATGCCCCTTCTCCACCAATACTTCCATTAGATGGCTACAAGCTTCAGGCTTCCCAGTGTGCTTACGTCCTTAGCCATCAGGAGCAGTTCCAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106562846

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039983.1 False 700 mRNA 0.42 2 12987573 12988538
TU2348594 True 891 lncRNA 0.45 3 12987564 12988797

Neighbor

gene id symbol gene type direction distance location
rinl rinl coding upstream 94964 12880635 ~ 12892609 (+)
sirt2 sirt2 coding upstream 107065 12875801 ~ 12880508 (+)
LOC110507577 LOC106580842 coding upstream 132272 12817186 ~ 12855301 (+)
nop53 LOC106612613 coding upstream 173536 12802441 ~ 12814037 (+)
trnaa-ugc-186 NA coding upstream 191903 12795595 ~ 12795670 (+)
LOC118944675 NA coding downstream 76753 13065291 ~ 13075518 (+)
LOC110507591 map4k1 coding downstream 209317 13197855 ~ 13216273 (+)
LOC110507592 LOC106580858 coding downstream 227941 13216479 ~ 13222270 (+)
LOC110507593 hif1a coding downstream 244993 13233531 ~ 13264437 (+)
LOC118944728 LOC106580863 coding downstream 364191 13352729 ~ 13365310 (+)
G2053448 NA non-coding upstream 1062 12986296 ~ 12986511 (+)
G2053447 LOC106580848 non-coding upstream 2568 12984669 ~ 12985005 (+)
G2053446 NA non-coding upstream 3311 12983905 ~ 12984262 (+)
G2053439 NA non-coding upstream 18258 12969082 ~ 12969315 (+)
G2053390 NA non-coding upstream 29791 12956738 ~ 12957782 (+)
G2053451 NA non-coding downstream 867 12989405 ~ 12989780 (+)
G2053453 LOC106612604 non-coding downstream 2746 12991284 ~ 12991696 (+)
G2053455 LOC106612604 non-coding downstream 4052 12992590 ~ 12992807 (+)
G2053460 LOC106580848 non-coding downstream 14924 13003462 ~ 13003929 (+)
G2053477 NA non-coding downstream 45019 13033557 ~ 13034088 (+)
G2053443 NA other upstream 8650 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 548095 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 849774 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1993985 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2209206 10755190 ~ 10778403 (+)
LOC110507618 LOC107659943 other downstream 566202 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 1836982 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2608495 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3081032 15776205 ~ 16131560 (+)
G2056820 NA other downstream 3385728 16374266 ~ 16376043 (+)

Expression


Co-expression Network