LOC110507592 (LOC106580858)


Basic Information

Item Value
gene id LOC110507592
gene name LOC106580858
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 13216479 ~ 13222270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587677.2
TTAATCATATCAGGAGGTTGCTGCAAACTGATGTGGTTTTAACACAAGTCGAATATGATTTGCTAGTTCATGATGGTCAGCCAGAGGGATGAATAGCAAAACTTTAAATCACCTCATTCTAAACATCAGTAGTCTAGCTGCAGCTCCTCATTACAGATGTATGGCAGCACCACTCGCACTATTCGAGGGGGTGCGCGCTACCTGTGCTTCGTTGGCTGTAATAACTAGGCTACCATGACCAATGATTTCTGACATTTGAAGAGGGTCTCTCGGCTTGCTCACTGAATAGTAGTCTTTAAAAGAAATGTGCTTGATGACCCATTAATTTATTGGATCTACAGGCTCACTAACTATGCCAGTCGCTCCCATTTTCATTGTAGTTTCGAGTATTATTTCCAGGTCAAAATTTCAGTTTCCTGTGTGGCTTGTTTGTAGGCTTCTAAAAATGGCCGGTGATGGAGGCGCTCTGAAGGATATCAATGAGATTAAATCCCAGTTCAGGACTAGAGAGGGTTTTTACAAACTACTGACCCTCTCGGATTCACAACAACGAGGCGGACTACCTCGGGGTTTGTCCGCAGGTACCACGGTGGGCCCCGGGGGTGGACCGGGTTCGATACCCGGTGGTGGTGTAGGTGTGGTGCAGGGGCCCGGAGCTGCCTCCAGCAATGCCGCAGCCAACTCCTCTCCGGCGGGATTCCTCCCTCCTGTCAGGGTCTCCATGGTGAAGCTTCAGCCGGAGGACCCGAGCGAAGAATCCGAGAGAGTGTGTTTTAACATCGGAAGAGAGCTTTATTTCTACACCTACACAAATATAAAGAAAGCTGTGGACCTCAGTAAACCCATAGACAAGCGTATCTACAAGGGCACCCAGCCCACCTGCCATGACTTCAACCAGTACTCTGCCACAGCAGACAGTGTGGCCCTCATTGTGGGCTTTTCAGCAGGCCAGGTTCAATACCTGGACCCCATTAAGAAGGAGACAAGCAAGCTCTTCAATGAGGAGAGGATGATAGACAAGTCCAAGGTAACCTGTCTGAAATGGCTGCCCAAGTCAGAGAATCTGTTCCTGGCCTCATACGCCAGTGgtcacctctacctctacaacgTGGAGCACCCGTGTGGCACCGCCGCCCCGCAGTATTCCCTGCTCCGCCAGGGCGAAGGCTTTGCCGTCTACGCCTGCAAGACGAAGACGCCCCGAAACCCGCTGCTGCGCTGGGCCGTAGGAAACGGAGGCCTTAATGAGTTTGCCTTCTCGCCGGACGGCGTGCATGTGGCGTGCGTGGGCCAGGACGGCTGCCTGCGTGTCTTCCACTTTGACTCCATGGAGCTGCAGGGCGTGATGAAGAGCTACTTCGGTGGCCTGCTGTGCGTCTCCTGGAGCCCCGATGGCAAATACCTGGCCACGGGCGGAGAGGACGACCTGGTGACGGTGTGGTCGTTTACGGAGAGCCGTGTGGTGGCCCGGGGACACGGCCATAAGTCCTGGGTGAATGTGGTGGCCTTTGACCCCTTCACCACCAGCCTGGGGGACGAGGAGCCCATGGAGCTGAGTGGCAGCGaggaggacctacagcaggggCCACTGCACTTTGGCCGCGTGCGCACCAGCAGCACGCTGTCACGCCTCTCCCGCCACAGCTCCAAGGGCGGCTCGCCCTCCGTCACCTACCGCTTCGGCTCGGTGGGCCAGGACACCCAGTTCTGCCTGTGGGATCTGACGGATGACGTGCTGTACCCGCGGCTGCCTTTGTCCCGTGCCCTCACCAACACCTTCGGTCCCACCATCCCCTCCTCTGTCAGCGGCACCATCAACAACACTACAGGCGGAGGGAGTGGAGGGGTCGTAGGCGGGGTAGAGggccaccaccaccccaccactaACCCCCACCAGCCCCCCACCATGCCCCTGCCACTCCCCCGCTCCCTGTCGCGCTCCAACTCCCTCCCGCACCCCGCCGTGGCCAATGTCTCTAAGGGCCAGAGCACAACAGAGGGCGGGGGAGGGAGCGGAGGGGGCAACGCCACCCCCTTCAGTATCGGCCGCTTCGCCACGCTCTCTCTGCAGGAGCGGAAGTCAGACAAGTCTGGAGGGAGTGGGGTGGGCGGGGAGAAGGAGCACAAGCGCTACCATAGCCTGGGAAACATCAGCAAGAGCAACGACAAGATCAACGTAGCGCCACGCAGCAGTCGCCTAGACGCCGCCAAGGTCCTGGGCACCACCCTGTGTCCGCGGATGCACGAGGTGCCCCTGCTGGAGCCCCTGGTGTGTAAGAAGATCGCCCACGAGAGACTGACCGTGCTGGTATTCATGGACGACTGCATCATCACCGCGTGCCAGGAGGGCCTCATCTGCACCTGGGCACGGCCTGGTAAAGTGAACTTGACAGCACAGAACGGGAACTCTCCCAGTGGCACGGTAGTATAGCTGGAAGTGGAACTTTgcactccctcctcccccccatctGCACCCGATCATCACAGTATTGCACCCCTGATGTACCCCCTTGCCTTTCACCACTTCTCTTTAGAAAGACTACAAAGCAAAATGTGGACCGTCCCTCTTTTCCCAGAAGCATAGAGAAGGCAGACTCCTCTCCACCCTGCTAACACTACAAAAGTcagtcattttatttatttattttaccttatcACAAGACTTAAGTAATTTATATTGTAAATAATTATACAAATACTCTATAAATTCAGAGGATAAAGAGTATTGAAATAATGACTCAAGCGAGTgaaaacaataaaataatatcACAATATGTAGATCCTATATTGTACATAGCGACACAGTTAACATTGAATGTCTGCAGTTAGGGACCTGAAGATGTAGTGTTTTTGTGTGATAGAGGTCCTTGATTTGTCGTGTCCCTTGACGCAAACTGGTTTGGTTTGTCAATAAAGATGGACGCATTTAGGGTCTTCGGCATCAAAGACTTGACCCTTGTGCAGTACAGAGAGCAATCTTCCTATGGCTGCTACTGCACTCTTCAGCTGAGACTGTCTGCTCCCAGGTATTCTTGTTCCTAACATGACAGCACAGAGTGACACACTGTACACAAGTATGCTTACAATCAGTGTAGCTTCAAATAGGCTCCATTCCACTCACACCTGCAATGCCTCTTGCAAGATTTTGCACATTCGACAGTCAGAATTTTAGCCCACAGAAGGAAACTAGAGGCAGTTTGTCTTGTTGTGATTTCTCTTTTGTGTTATGTTAATTTATTTCAAGTTATTTCAAGCTACTGATTCTAACTGGACTGTATTATTTGTGGATTCTCTGTATGTGATATCCATGATATTCTACCAACCTGTGGGCCTTGCATCAAACCATTGTTTTACCTAGAAATTATTTTGTGTGGGTTTTGAGGTTCGGTATGCTGAAAGGCATGCGACAACAAATGAGTCAAACCTACTAGTGTGATAACACCAGACTAGAAATGGTGGtggaccaacaacaacaaaaatgtgtggaGAAGAAGTGACTGTGTTTTTAAGATCTGGCCAGTTAAGAACACTTGGTAACAGAAATGTTTACCCTGGCAAGTTCAAGGGCCTACCATCTTATTAGTGTATGTCCTAATAACAGTTGTGAAATAGCAAAAGGTGACACTAAAACCAAGACTCAAATCATTTAATGTACACTGAAGACTACCAACTGACTGAATGCCTTGTTCAATACTGCAAGACAATGGGAACTAACCATTTTATGCCAAGGGAAGAAAATCCATTCCATTTGTTTCTCTTTTTGACCGTTTACAGCAAACCATAGCATGTAATGTTTAATTCAGTGTGCATTATACATATGCCTGAGGTGATGAAGTTAGTGGCAAATGATATCACAGTATCAAGTTTGTATATGGAGTTCTGTTAATAAAATTCTAAACCCAAA
>TU2348666
GAGCACAAGCGCTACCATAGCCTGGGAAACATCAGCAAGAGCAACGACAAGATCAACGTAGCGCCACGCAGCAGTCGCCTAGACGCCGCCAAGGTCCTGGGCACCACCCTGTGTCCGCGGATGCACGAGGTGCCCCTGCTGGAGCCCCTGGTGTGTAAGAAGATCGCCCACGAGAGACTGACCGTGCTGGTATTCATGGACGACTGCATCATCACCGCGTGCCAGGAGGGCCTCATCTGCACCTGGGCACGGCCTGGTAAAGTGAACTTGACAGCACAGAACGGGAACTCTCCCAGTGGCACGGTAGTATAGCTGGAAGTGGAACTTTgcactccctcctcccccccatctGCACCCGATCATCACAGTATTGCACCCCTGATGTACCCCCTTGCCTTTCACCACTTCTCTTTAGAAAGACTACAAAGCAAAATGTGGACCGTCCCTCTTTTCCCAGAAGCATAGAGAAGGCAGACTCCTCTCCACCCTGCTAACACTACAAAAGTcagtcattttatttatttattttaccttatcACAAGACTTAAGTAATTTATATTGTAAATAATTATACAAATACTCTATAAATTCAGAGGATAAAGAGTATTGAAATAATGACTCAAGCGAGTgaaaacaataaaataatatcACAATATGTAGATCCTATATTGTACATAGCGACACAGTTAACATTGAATGTCTGCAGTTAGGGACCTGAAGATGTAGTGTTTTTGTGTGATAGAGGTCCTTGATTTGTCGTGTCCCTTGACGCAAACTGGTTTGGTTTGTCAATAAAGATGGACGCATTTAGGGTCTTCGGCATCAAAGACTTGACCCTTGTGCAGTACAGAGAGCAATCTTCCTATGGCTGCTACTGCACTCTTCAGCTGAGACTGTCTGCTCCCAGGTATTCTTGTTCCTAACATGACAGCACAGAGTGACACACTGTACACAAGTATGCTTACAATCAGTGTAGCTTCAAATAGGCTCCATTCCACTCACACCTGCAATGCCTCTTGCAAGATTTTGCACATTCGACAGTCAGAATTTTAGCCCACAGAAGGAAACTAGAGGCAGTTTGTCTTGTTGTGATTTCTCTTTTGTGTTATGTTAATTTATTTCAAGTTATTTCAAGCTACTGATTCTAACTGGACTGTATTATTTGTGGATTCTCTGTATGTGATATCCATGATATTCTACCAACCTGTGGGCCTTGCATCAAACCATTGTTTTACCTAGAAATTATTTTGTGTGGGTTTTGAGGTTCGGTATGCTGAAAGGCATGCGACAACAAATGAGTCAAACCTACTAGTGTGATAACACCAGACTAGAAATGGTGGtggaccaacaacaacaaaaatgtgtggaGAAGAAGTGACTGTGTTTTTAAGATCTGGCCAGTTAAGAACACTTGGTAACAGAAATGTTTACCCTGGCAAGTTCAAGGGCCTACCATCTTATTAGTGTATGTCCTAATAACAGTTGTGAAATAGCAAAAGGTGACACTAAAACCAAGACTCAAATCATTTAATGTACACTGAAGACTACCAACTGACTGAATGCCTTGTTCAATACTGCAAGACAATGGGAACTAACCATTTTATGCCAAGGGAAGAAAATCCATTCCATTTGTTTCTCTTTTTGACCGTTTACAGCAAACCATAGCATGTAATGTTTAATTCAGTGTGCATTATACATATGCCTGAGGTGATGAAGTTAGTGGCAAATGATATCACAGTATCAAGTTTGTATATGGAGTTCTGTTAATAAAATTCTAAACCCAAA
>TU2348667
GAGCACAAGCGCTACCATAGCCTGGGAAACATCAGCAAGAGCAACGACAAGATCAACGTAGCGCCACGCAGCAGTCGCCTAGACGCCGCCAAGGTCCTGGGCACCACCCTGTGTCCGCGGATGCACGAGGTGCCCCTGCTGGAGCCCCTGGTGTGTAAGAAGATCGCCCACGAGAGACTGACCGTGCTGGTATTCATGGACGACTGCATCATCACCGCGTGCCAGGAGGGCCTCATCTGCACCTGGGCACGGCCTGGTAAAGTGAACTTGACAGCACAGAACGGGAACTCTCCCAGTGGCACGGTAGTATAGCTGGAAGTGGAACTTTgcactccctcctcccccccatctGCACCCGATCATCACAGTATTGCACCCCTGATGTACCCCCTTGCCTTTCACCACTTCTCTTTAGAAAGACTACAAAGCAAAATGTGGACCGTCCCTCTTTTCCCAGAAGCATAGAGAAGGCAGACTCCTCTCCACCCTGCTAACACTACAAAAGTcagtcattttatttatttattttaccttatcACAAGACTTAAGTAATTTATATTGTAAATAATTATACAAATACTCTATAAATTCAGAGGATAAAGAGTATTGAAATAATGACTCAAGCGAGTgaaaacaataaaataatatcACAATATGTAGATCCTATATTGTACATAGCGACACAGTTAACATTGAATGTCTGCAGTTAGGGACCTGAAGATGTAGTGTTTTTGTGTGATAGAGGTCCTTGATTTGTCGTGTCCCTTGACGCAAACTGGTTTGGTTTGTCAATAAAGATGGACGCATTTAGGGTCTTCGGCATCAAAGACTTGACCCTTGTGCAGTACAGAGAGCAATCTTCCTATGGCTGCTACTGCACTCTTCAGCTGAGACTGTCTGCTCCCAGGTATTCTTGTTCCTAACATGACAGCACAGAGTGACACACTGTACACAAGTATGCTTACAATCAGTGTAGCTTCAAATAGGCTCCATTCCACTCACACCTGCAATGCCTCTTGCAAGATTTTGCACATTCGACAGTCAGAATTTTAGCCCACAGAAGGATTTCTCTTTTGTGTTATGTTAATTTATTTCAAGTTATTTCAAGCTACTGATTCTAACTGGACTGTATTATTTGTGGATTCTCTGTATGTGATATCCATGATATTCTACCAACCTGTGGGCCTTGCATCAAACCATTGTTTTACCTAGAAATTATTTTGTGTGGGTTTTGAGGTTCGGTATGCTGAAAGGCATGCGACAACAAATGAGTCAAACCTACTAGTGTGATAACACCAGACTAGAAATGGTGGtggaccaacaacaacaaaaatgtgtggaGAAGAAGTGACTGTGTTTTTAAGATCTGGCCAGTTAAGAACACTTGGTAACAGAAATGTTTACCCTGGCAAGTTCAAGGGCCTACCATCTTATTAGTGTATGTCCTAATAACAGTTGTGAAATAGCAAAAGGTGACACTAAAACCAAGACTCAAATCATTTAATGTACACTGAAGACTACCAACTGACTGAATGCCTTGTTCAATACTGCAAGACAATGGGAACTAACCATTTTATGCCAAGGGAAGAAAATCCATTCCATTTGTTTCTCTTTTTGACCGTTTACAGCAAACCATAGCATGTAATGTTTAATTCAGTGTGCATTATACATATGCCTGAGGTGATGAAGTTAGTGGCAAATGATATCACAGTATCAAGTTTGTATATGGAGTTCTGTTAATAAAATTCTAAACCCAAA

Function

NR:

description
dystrophia myotonica WD repeat-containing protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587677.2 False 3904 mRNA 0.51 4 13216479 13222270
TU2348666 False 1785 lncRNA 0.43 2 13220262 13222270
TU2348667 True 1758 lncRNA 0.43 3 13220262 13222270

Neighbor

gene id symbol gene type direction distance location
LOC110507591 map4k1 coding upstream 206 13197855 ~ 13216273 (+)
LOC118944675 NA coding upstream 140961 13065291 ~ 13075518 (+)
LOC110507586 LOC106565025 coding upstream 227941 12987564 ~ 12988797 (+)
rinl rinl coding upstream 323870 12880635 ~ 12892609 (+)
sirt2 sirt2 coding upstream 335971 12875801 ~ 12880508 (+)
LOC110507593 hif1a coding downstream 11261 13233531 ~ 13264437 (+)
LOC118944728 LOC106580863 coding downstream 130459 13352729 ~ 13365310 (+)
LOC110507076 LOC106580865 coding downstream 163779 13386049 ~ 13404009 (+)
LOC110507600 LOC106580866 coding downstream 195960 13418230 ~ 13425382 (+)
LOC110507601 ercc2 coding downstream 209203 13431473 ~ 13439015 (+)
G2053540 NA non-coding upstream 30384 13183317 ~ 13186095 (+)
G2053513 actn4 non-coding upstream 81132 13126295 ~ 13135347 (+)
G2053511 NA non-coding upstream 93406 13115203 ~ 13123073 (+)
G2053514 NA non-coding upstream 101413 13113806 ~ 13115066 (+)
G2053510 NA non-coding upstream 102919 13112925 ~ 13113560 (+)
G2053563 NA non-coding downstream 7826 13230096 ~ 13230331 (+)
G2053564 NA non-coding downstream 9236 13231506 ~ 13231866 (+)
G2053565 NA non-coding downstream 9711 13231981 ~ 13232330 (+)
G2053583 NA non-coding downstream 53720 13275990 ~ 13278488 (+)
G2053622 NA non-coding downstream 100965 13323235 ~ 13323660 (+)
G2053443 NA other upstream 237556 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 777001 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 1078680 12127441 ~ 12137799 (+)
G2051034 NA other upstream 2222891 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2438112 10755190 ~ 10778403 (+)
LOC110507618 LOC107659943 other downstream 332470 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 1603250 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2374763 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 2847300 15776205 ~ 16131560 (+)
G2056820 NA other downstream 3151996 16374266 ~ 16376043 (+)

Expression


Co-expression Network