LOC110507593 (hif1a)


Basic Information

Item Value
gene id LOC110507593
gene name hif1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 13233531 ~ 13264437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964854.1
TCTCATTGGCTATAATGTCTGCAAAGGCGGAAGGCAGGCGGTACGAGGCGTTGTGGTTAGATCTTTCTCGCGTTGAACAGAACAGTCAGTATAGAATAAAACAATACCTGAAGTGTTAGATTTAACGTTTACGATTTGAATATGGATACGAAAGAAGAGCCTGTTGGAAAACGgTCGAGTACGGATCAGCGGAAGGTGCGTTCCCGGGATGCGGCGCGCTGCAGGCGGAGTCTGGAGACGGAGCTGTTCTACAAGTTGGCCCACACCCTGCCCCTCCCCCGCAGAGTCTCCGCCGACCTGGACAAGGCCGCCATCATGAGGGTGACGCTCAGCTTCCTTCGCATGCACCACCTCCGCTCAGGGGACACGAGTGAGGACCGCGTCACAGATGGGGACGAGGACACGGTGGATGCGTTCTACCCCCGGGCGCTGGCAGGCTTCATCCTGGTGATGACCGAGGAGGGGGATATGATTTACCTGGGTGACAGCGTCAGCAAACACCTGGGCATCCCACAGCTGGAGTTGCTGGGTCAGAGTGTGTATGACTTTGTCCACCCATGTGACCAAGAGGAGCTACGGGAACTCCTGGCGCCTAGGCCAGGTGTGTCCAAGAAGAAACCAGTGCAGCAACACACAGAGATTAACTTCTTCCTTAGGATGAAGAGCACTCTGACTAGTAGAGGGCGCACTGTCAACATAAAGTCTGCCACCTGGAAGGTGCTGCACTGTACAGGCCACATGCGTGTGTGCTGCAGTGGCGAGGATTCATCACCTCCTGCAGGCAGCTTCATGACAGTGCTGTGTGAGCCCATCCCCCATCCGTCTAGTGTGGAGTTCCCCTTGGACCGGAGCACGTTCCTCACTCGACACAGCATGGACCTGTGCTTCACACACTGCGATGGCAGGGTGTCAGAGCTAGTAGGATACGAGCCAGAAGATCTGATTGGCAAATCTGCCTACAAATTCCATCATGCCCTGGACTCAGATCATGTGACCAAGAGCCTGCACATCCTTCTGTCCAAAGGCCAGGTGTGCACCAGTCTATACCGTTTCCTGGCTAAGAGTGGGGGCTTCGTGTGGGCAGAGACGCAGGCTACAGTCATCTACAACAACAAGACCTCTCAACCAGAGGCTGTGGTCTGTCTTAACTTTATCCTCAGTGTGGTGGAGCAGGCGGATGTGGTGTTCTCAGTAGAGCAGACTGGCTGTGGGCTGAAGAGTGATCCTGTCTCTGAGGCCTCCGAGGAGACCGTGTGTGACAGTGACAACAGCAGCAGTGCAGAGCTCTCCCTCCAGCTGAAGGAGAACCCAGAGGACCTCCTCCAACTGGCCCCTGTCTCAGGAGACCCCATCGTACCCCTCACAGACTTTGCGGAGCCGTCGTTCAGTCTTCCATCAAGCTCTGACTCCGCCCCAGATTTCCCTCAGGAACTGTGCACCCCTGAGCTGTGGAAGCTCCTCTCACCCATATTCAGCAAGCTCACCTCATCAGCACCAGCGCTGATCCCCATTGAGGAGCTGCCAATAGAGGACGAGGTGGCGAAGTTGTTTGCGGTCTGTCCAGATGAGAGCGTGCAGAAGAGAAACCAGCCTGAGGACATGGAAGTGGTTGATCTGGACATGCTGGCTCCGTATATCTCCATGGATGATGATTTCCTGCTCAGCGTCCAGGTCCCTGAGACCCCTGACAGCCCCTCCCCAGAGCCCCCCACTGCTACCAGGAAACGAAGTCATGAGCAGGATGAAGACATGCCCTCCCAGCTGATGAGTCAGGACAAGAGACCGAGACACTTGGTGTCCCCCATCCAGCACAAACTGCTTCTCAGCTACGCCCTGCTGGACTGCCTGGAGGATGTAGACAACCCAGAGTTGGAGCTGGGGTCAATCCCCCACAGGCGGAGCCAACTGCTGACGGACAGAGACCCCATCCTCGGTGAAGCCCAGGGACTATGTGACACTGCAGCCTTGATGAGGGACCTCTTCTTGTCCCGCCCACCTGACCCCCTGACCTCCTCTCTGACTTGAGGAAGCAGCTGCCAATCTTCCCCTGCCAGCTGGGGAGTGCAGAGATCACAGAGCCTCAACAGGATTCACACACTCCCCAACCAGACACCAGCACCTCCTACTCAGACTTCCTCACTGTTCACAACAACAGCCTGTTATGGTTTTCCTTCTTTTCTCTCTGAAATACTCTTTCATGTCTCAGAGTAGGTGGCAGTACTaggttcaccccccccccccccccccccccccccccccacccccttctcATTCAGGGTTGATAAGTGTTCTCCTCTATTCTTGTGAACACTTGTAGACTTTAGTCTAAACACTACACTTGACCCCATGGTGCTTCCGAGGTCAGAACAGAAGAAGAACCCATACGTACAGTAAGTCTGACAAagtggtgttttaggacacaGTGATGACCCTTCAGTTGGTCTATTGTTGTTTAGTACGGTATGTGGACCTGACAGTCTGTACAGGACATTTTAGgttaattattatattattattttgtaaCAAACACACAACGGTTATCTCCCAATAATACCTCAGAACGATCGTCAGTGGCATATATGGGTCATTTTTATAAGAAAAGATCAAATGAATTACTACCAACACAAGCCATTGCTATTGACCAGTTGGATGCAGTACTCAGGCAGTTGTTACCTCAACAAATAATCTGTAGATCAAACTCGACTGTCATAAAAGGGCTCTTTGACTGTCATCTCTTTCCAACCAAACTGACAAATTATTTGAGGCATCTTTTTACCTCAGCTTTTTTTATATACTTTACATGCTAGACTTTAGAACAATTTGATGTATTAAAATGTTTTGTATGCTCGCTTATAAGACTACTATTGTATGAACCGCAATGTTTTCGTTGTTTTTATCATGTATTTTTCTAGGTGGCGCCAGATGATCACCTTGTCATTTAATGAGTCATTATTTCTTTTCGGAATATGGTTGCTATTTTGCAAATCCAGTGGATAAATATCTGATATACGCCTTTTGCGTATTCATTTCACACCAAGTAGAAATGACTACTTAACACCTTGTCAATTACTCCCCCGTTGTTGTCTTTTATTATGAATCTATCGTTTAGGAGAAAAGATCATTGGTTTGAAGCACACCCAGGATTTATTTTAGTTGCTTGTTTATAAGATTATTGCATTTAGATTCATCTTAATGTTTTAGTTCCATTTAGACATTTGCCTTTTATCATAACTTTCATTTTCAGACTAGTGTTATTGACTGAATAAACTGATAGACAAATTCACGTTTTATTATGTTAAGAAATACTGCCATCTTGTGGTGTTAATGGTAGATTTATATTTAGTTTGCTGCCTGA

Function

symbol description
hif1a Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; Hsp90 protein binding activity; and enzyme binding activity. Contributes to DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in several processes, including oxygen homeostasis; regulation of gene expression; and vascular endothelial growth factor production. Acts upstream of or within regulation of transcription, DNA-templated and response to hypoxia. Located in chromatin; cytosol; and nuclear body. Part of RNA polymerase II transcription regulator complex. Implicated in lung non-small cell carcinoma; myocardial infarction; prostate cancer; and type 2 diabetes mellitus. Biomarker of several diseases, including arthritis (multiple); invasive ductal carcinoma; kidney cancer (multiple); morbid obesity; and mycosis fungoides.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964854.1 True 3355 mRNA 0.49 15 13233531 13264437

Neighbor

gene id symbol gene type direction distance location
LOC110507592 LOC106580858 coding upstream 11261 13216479 ~ 13222270 (+)
LOC110507591 map4k1 coding upstream 17258 13197855 ~ 13216273 (+)
LOC118944675 NA coding upstream 158013 13065291 ~ 13075518 (+)
LOC110507586 LOC106565025 coding upstream 244993 12987564 ~ 12988797 (+)
rinl rinl coding upstream 340922 12880635 ~ 12892609 (+)
LOC118944728 LOC106580863 coding downstream 88292 13352729 ~ 13365310 (+)
LOC110507076 LOC106580865 coding downstream 121612 13386049 ~ 13404009 (+)
LOC110507600 LOC106580866 coding downstream 153793 13418230 ~ 13425382 (+)
LOC110507601 ercc2 coding downstream 167036 13431473 ~ 13439015 (+)
ckmb LOC106612591 coding downstream 203765 13468202 ~ 13471952 (+)
G2053565 NA non-coding upstream 1201 13231981 ~ 13232330 (+)
G2053564 NA non-coding upstream 1665 13231506 ~ 13231866 (+)
G2053563 NA non-coding upstream 3200 13230096 ~ 13230331 (+)
G2053540 NA non-coding upstream 47436 13183317 ~ 13186095 (+)
G2053583 NA non-coding downstream 11553 13275990 ~ 13278488 (+)
G2053622 NA non-coding downstream 58798 13323235 ~ 13323660 (+)
G2053639 NA non-coding downstream 81196 13345633 ~ 13345860 (+)
G2053650 NA non-coding downstream 95649 13360086 ~ 13361770 (+)
G2053443 NA other upstream 254608 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 794053 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 1095732 12127441 ~ 12137799 (+)
G2051034 NA other upstream 2239943 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2455164 10755190 ~ 10778403 (+)
LOC110507618 LOC107659943 other downstream 290303 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 1561083 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2332596 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 2805133 15776205 ~ 16131560 (+)
G2056820 NA other downstream 3109829 16374266 ~ 16376043 (+)

Expression


Co-expression Network