LOC118944728 (LOC106580863)


Basic Information

Item Value
gene id LOC118944728
gene name LOC106580863
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 13352729 ~ 13365310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965267.1
GAGCAGCAACATTTCTCTAGTCGAGGTGCATGTCAGGACATGTTGTCATGCATGGTGGAGAGGGCGTGGCGAAACAGGCAACCGCGGGAGTGAAAGCAAAGTGATACCACTATGAAACAGTCTCCCCTGTAATCAACATTTGGACCATAGCTCCGTGAAAACGGGTTGGATAAGCATCGATTTCCGTGGAATAAAAGAAGACTAGACGGCTTGTATGTGCTGACTGTTTTGACAATCGTAGTGGGAAACGTGGAATGTCACAAACTACAAGTGGACTTTCTTCAACATCTAACGCAAGGACAAGTCGCGAGTCAAACAGCTTGTTGGACACATATTCTGATGTCAACAAGCAATCGACAGTGCCTCAACTACAGACAGATTTACAGTAATCACGAATCATCAGATACATCAAACTGCACCTGGTATGGCCCGCCCCCAGACGGAGAGTGGAGTGGACCACCATGGCCGGGGCAGACAACACAGCTGCCGCATGGAGGTCCAGCGGCCAGACACCTGGCCTGGTGGCAGCAACAACCCTCTCCAGGCTGCATACCACCAGTCCTGCCAACTGCTCCCCAACATGGACACCCAGCCCAGGCAGGGCTCTCTGCCCCCCCAGCCACAGAGAGAAGCCTCCCCACCCCCCAGTATCCATCCACTGGACACCTCCACAAGAGCAAGCACAGACCCAGACAGAGAGCTCCAGGACACCACAGCCAGGGATCCCCTGCCTGACCTGCTGCCCCAGAGAGAGCGTTCTCCCCAGGCTTCTCCCCAGCACAGAGCCCCTGGAGTAGCGGACCCGCGGTTGGACAACGAGGTGGTGGAAAGAGTGGCCAACCAGCTCAAGAGAATCGGCGACGACTTGAACGCTACGATCCTCCAGAGAATGggtggcATCCCCCAACGGCAGGACTGGAGAGGCCTATGTCTAGGAGTCCTCAACTTCCTCTCGGATACCCTCAGCATTCTGTACCGACTGAGATAGACTGACCCTAGGGATTGGACACGCCGGAGCTCCCTACTGGACCAATCCCAGACTGCTTCAGAATGGACTCAGTCCGCTGGATCGGACAAACCCCTTTTGTTTAGTCTCTTTTGTACatcttgtgtatatatatatatatatatatttttttttttcaatctctCTTTGGGACAGCTCCTGATGAAGCATTCTGACCCAGGTTGGTCTCCCAGACCGTGTGGGcttgtgtgtgttcctgtcctTTCTTGTAAACTGTGAAGCACACTGATGTGTGGTGTGGTGGCGACGTGAGGGCTTTACCTGGCGGAGAGGCTATGgcccctgtatgtgtgtgtacaactTCTTCCAATTAAGGTCATGGTACAGTAGAATGAGCAATTCAACTGCTCGACAGCATGGCTTGATGCGGGTACTGAGGGGCCTGTGTAGAATCCCCTGTAAGTCACACTATGGTTAATACGAATCAGTTTATATCGCTGGATGAGCCAAGCTTACTGCTGGGATAAGTTATAGCGATATACTATATGGGATCTGCTGTAGAGGTCGGCCTATAGTTTCAGACAGGACCAACTTGACTTGGTAAACAGAGCCAGTACACTCTTAGTAAAAacggttccaaaagggttatccGGCTGTCCCCATTGGGAGAACCCTATGGgcacagccgaagaacccttttaggttctagatagcacctttttttcctaagagtgtagtggtgtatataaatTGAAATGTATGCTACTCTTCCCTTCAAATCTGAATACATTTCATTGACCTCTCTGTGCCTTTCTATCGCTCCCATCACCAGGACAATCAGTGGTTGGTGTGTGGGACCCTGGATGGAGCAgtggttgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaacactatATGAGCCAGTTACCAGACCATCACTTCTATTGGGGGCTCTGAGTTGAGCTGTAACACTGTCGGACAATCCCTCTATTATTACCAGTGTTAAATTGTTTGTATATATTTGTTTTGGGAGATGGTGGTTTGGTTTGGAGGTGGATAGGAGGAGCCAGTAACAAGCCATCGTGAAGACCTGTTATCATTGGATAAGATTCAATTAGCTTTAAACGTACTTAAATTGTAAGTTCTCTGTTTGTGTTTGAAATCTGCCATGTGTGCAGTTGTTTTTGTCTTTGGATCAACAGTTGGAAGCAGTTAGTGTATTTAAATCCAGTGGATTTGAGATGGTATTTCTGGTTAAAACATGACTTGGATGTTTATCTTTTCATGATTACTAAATGATAATCAAATTGCCCCTCAATTGTATAATACATGTATTGTAGTTCGGGAGAAGAAACTGAAGACCTTTCTTTATTTTGACGTTAAACACGTTTTGTAGCGTTTTGTTTCGTTTTCAAAAATACAATTTGTATGGACTTTTTCTGTGTGaaataagttttttttttcattcattcCTAATAAAAAATTAATTCTAAATCTATCTGAAAGCCAAGAACCCATAAAATGAGGATTGAATAAGCTTAAAGATAAATATCTGACAATAGACTGGAATAACTTGACCAGTCAGTTCATCCCCAGTTACACAAAGGGCGAACCGTCAACCGTGTTAGAGCATTGATATTTGTCTTTGCCAAGGCATTCCATTAAAAAGTTTCCATAGTCAGTTTGTACACAACGTTTTATCTCAAAGCGTCCAGGAAATCAGGGCTTTTAAGAAACACCAACCATTTTTTGTGAACCAACAACTGTCCCTATCAATTCAAAGCATTACAAAGAGGAACAACATGTGTCCAAATGTCTAGAAAGAGGTCACAACAACAAGCAATGTAGTGGTTGAAATCAGTTGAGAACGTTTGCATGTCAAGTGGGAGAAACTGAGCCTTCACTGAAGCCTACAGTTTTAACCTTGAACCCAAGAGGTTAACAGTCCCAACTTGCCATGTAAACCTGAAACAGACGTTCTGATGGATACAACTGTGATCATCCTATTTTCTGTGTTGCCATACTGTATCAATTATAAAGCCTTAACATTACTGCAGTCTATGCTTTGTTTTCAGTTCaggttatttattttttggagcCCCTTTTTGCAATGTCATTACACCTTTAAGCAAAGAACCTGTGAGAATAACCAAGCACCTTTTTTTCTGTGGGAAACTGGGCGTCCCCTATAGCGTTCGGAGCACGTGTTGTTCATTTCCTGTGACAGCCTCATGACATCCTGTGGTGTGTGCCGTGGCGTGGTTCACTTCCTGTGGCGACTATGTGACTTCTTGTGGTTCCATTCTCCAATGTACTCTCTCACAGAGGGATCGCACTGCTGTAAAGTAGCACCACATTTTTTGTGGGAATCTCATTCTCAGTTTCAtgcagtgtaaatttgctgtttttgactttttttttttactgaacttTCTACATGAAATTTTTGTACAGATTTGTTTCCTTATTAACAATAAAGATATGAAATCTA
>TU2348805
CCAGTTACCAGACCATCACTTCTATTGGGGGCTCTGAGTTGAGCTGTAACACTGTCGGACAATCCCTCTATTATTACCAGTGTTAAATTGTTTGTATATATTTGTTTTGGGAGATGGTGGTTTGGTTTGGAGGTGGATAGGAGGAGCCAGTAACAAGCCATCGTGAAGACCTGTTATCATTGGATAAGATTCAATTAGCTTTAAACGTACTTAAATTGTAAGTTCTCTGTTTGTGTTTGAAATCTGCCATGTGTGCAGTTGTTTTTGTCTTTGGATCAACAGTTGGAAGCAGTTAGTGTATTTAAATCCAGTGGATTTGAGATGGTATTTCTGGTTAAAACATGACTTGGATGTTTATCTTTTCATGATTACTAAATGATAATCAAATTGCCCCTCAATTGTATAATACATGTATTGTAGTTCGGGAGAAGAAACTGAAGACCTTTCTTTATTTTGACGTTAAACACGTTTTGTAGCGTTTTGTTTCGTTTTCAAAAATACAATTTGTATGGACTTTTTCTGTGTGaaataagttttttttttcattcattcCTAATAAAAAATTAATTCTAAATCTATCTGAAAGCCAAGAACCCATAAAATGAGGATTGAATAAGCTTAAAGATAAATATCTGACAATAGACTGGAATAACTTGACCAGTCAGTTCATCCCCAGTTACACAAAGGGCGAACCGTCAACCGTGTTAGAGCATTGATATTTGTCTTTGCCAAGGCATTCCATTAAAAAGTTTCCATAGTCAGTTTGTACACAACGTTTTATCTCAAAGCGTCCAGGAAATCAGGGCTTTTAAGAAACACCAACCATTTTTTGTGAACCAACAACTGTCCCTATCAATTCAAAGCATTACAAAGAGGAACAACATGTGTCCAAATGTCTAGAAAGAGGTCACAACAACAAGCAATGTAGTGGTTGAAATCAGTTGAGAACGTTTGCATGTCAAGTGGGAGAAACTGAGCCTTCACTGAAGCCTACAGTTTTAACCTTGAACCCAAGAGGTTAACAGTCCCAACTTGCCATGTAAACCTGAAACAGACGTTCTGATGGATACAACTGTGATCATCCTATTTTCTGTGTTGCCATACTGTATCAATTATAAAGCCTTAACATTACTGCAGTCTATGCTTTGTTTTCAGTTCaggttatttattttttggagcCCCTTTTTGCAATGTCATTACACCTTTAAGCAAAGAACCTGTGAGAATAACCAAGCACCTTTTTTTCTGTGGGAAACTGGGCGTCCCCTATAGCGTTCGGAGCACGTGTTGTTCATTTCCTGTGACAGCCTCATGACATCCTGTGGTGTGTGCCGTGGCGTGGTTCACTTCCTGTGGCGACTATGTGACTTCTTGTGGTTCCATTCTCCAATGTACTCTCTCACAGAGGGATCGCACTGCTGTAAAGTAGCACCACATTTTTTGTGGGAATCTCATTCTCAGTTTCAtgcagtgtaaatttgctgtttttgactttttttttttactgaactt
>TU2348806
AGGAGGAGCCAGTAACAAGCCATCGTGAAGACCTGTTATCATTGGATAAGATTCAATTAGCTTTAAACGTACTTAAATTGTAAGTTCTCTGTTTGTGTTTGAAATCTGCCATGTGTGCAGTTGTTTTTGTCTTTGGATCAACAGTTGGAAGCAGTTAGTGTATTTAAATCCAGTGGATTTGAGATGGTATTTCTGGTTAAAACATGACTTGGATGTTTATCTTTTCATGATTACTAAATGATAATCAAATTGCCCCTCAATTGTATAATACATGTATTGTAGTTCGGGAGAAGAAACTGAAGACCTTTCTTTATTTTGACGTTAAACACGTTTTGTAGCGTTTTGTTTCGTTTTCAAAAATACAATTTGTATGGACTTTTTCTGTGTGaaataagttttttttttcattcattcCTAATAAAAAATTAATTCTAAATCTATCTGAAAGCCAAGAACCCATAAAATGAGGATTGAATAAGCTTAAAGATAAATATCTGACAATAGACTGGAATAACTTGACCAGTCAGTTCATCCCCAGTTACACAAAGGGCGAACCGTCAACCGTGTTAGAGCATTGATATTTGTCTTTGCCAAGGCATTCCATTAAAAAGTTTCCATAGTCAGTTTGTACACAACGTTTTATCTCAAAGCGTCCAGGAAATCAGGGCTTTTAAGAAACACCAACCATTTTTTGTGAACCAACAACTGTCCCTATCAATTCAAAGCATTACAAAGAGGAACAACATGTGTCCAAATGTCTAGAAAGAGGTCACAACAACAAGCAATGTAGTGGTTGAAATCAGTTGAGAACGTTTGCATGTCAAGTGGGAGAAACTGAGCCTTCACTGAAGCCTACAGTTTTAACCTTGAACCCAAGAGGTTAACAGTCCCAACTTGCCATGTAAACCTGAAACAGACGTTCTGATGGATACAACTGTGATCATCCTATTTTCTGTGTTGCCATACTGTATCAATTATAAAGCCTTAACATTACTGCAGTCTATGCTTTGTTTTCAGTTCaggttatttattttttggagcCCCTTTTTGCAATGTCATTACACCTTTAAGCAAAGAACCTGTGAGAATAACCAAGCACCTTTTTTTCTGTGGGAAACTGGGCGTCCCCTATAGCGTTCGGAGCACGTGTTGTTCATTTCCTGTGACAGCCTCATGACATCCTGTGGTGTGTGCCGTGGCGTGGTTCACTTCCTGTGGCGACTATGTGACTTCTTGTGGTTCCATTCTCCAATGTACTCTCTCACAGAGGGATCGCACTGCTGTAAAGTAGCACCACATTTTTTGTGGGAATCTCATTCTCAGTTTCAtgcagtgtaaatttgctgtttttgactttttttttttactgaactt

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965267.1 False 3493 mRNA 0.45 4 13352729 13365310
TU2348805 False 1512 lncRNA 0.38 1 13363740 13365251
TU2348806 True 1374 lncRNA 0.38 1 13363878 13365251

Neighbor

gene id symbol gene type direction distance location
LOC110507593 hif1a coding upstream 88292 13233531 ~ 13264437 (+)
LOC110507592 LOC106580858 coding upstream 130459 13216479 ~ 13222270 (+)
LOC110507591 map4k1 coding upstream 136456 13197855 ~ 13216273 (+)
LOC118944675 NA coding upstream 277211 13065291 ~ 13075518 (+)
LOC110507586 LOC106565025 coding upstream 364191 12987564 ~ 12988797 (+)
LOC110507076 LOC106580865 coding downstream 20739 13386049 ~ 13404009 (+)
LOC110507600 LOC106580866 coding downstream 52920 13418230 ~ 13425382 (+)
LOC110507601 ercc2 coding downstream 66163 13431473 ~ 13439015 (+)
ckmb LOC106612591 coding downstream 102892 13468202 ~ 13471952 (+)
LOC110507607 LOC106580870 coding downstream 166174 13531054 ~ 13534857 (+)
G2053639 NA non-coding upstream 6869 13345633 ~ 13345860 (+)
G2053622 NA non-coding upstream 29069 13323235 ~ 13323660 (+)
G2053583 NA non-coding upstream 74241 13275990 ~ 13278488 (+)
G2053565 NA non-coding upstream 120399 13231981 ~ 13232330 (+)
G2053564 NA non-coding upstream 120863 13231506 ~ 13231866 (+)
G2053653 NA non-coding downstream 2439 13367749 ~ 13367972 (+)
G2053679 NA non-coding downstream 61486 13426796 ~ 13427150 (+)
G2053699 NA non-coding downstream 107141 13472451 ~ 13475702 (+)
G2053706 NA non-coding downstream 120581 13485891 ~ 13486186 (+)
G2053443 NA other upstream 373806 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 913251 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 1214930 12127441 ~ 12137799 (+)
G2051034 NA other upstream 2359141 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2574362 10755190 ~ 10778403 (+)
LOC110507618 LOC107659943 other downstream 189430 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 1460210 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2231723 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 2704260 15776205 ~ 16131560 (+)
G2056820 NA other downstream 3008956 16374266 ~ 16376043 (+)
G2053650 NA non-coding upstream 1970 13360086 ~ 13361770 (+)

Expression


Co-expression Network