LOC110507614 (LOC106580877)


Basic Information

Item Value
gene id LOC110507614
gene name LOC106580877
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 13715887 ~ 13721734 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587714.2
TGTTCTCAAACGATGGATGGAGAGCGGTTGTCCGAGGTAGAGTGAAATATATCTACTGCTGCAAATAGCTGCACCGAGTCAGCTTTAAACAGTTTTTATTCGAAATTAAGAAGTCAAGGATAAGGAGTCAACACTTTCTGTAATGAACGTTATTTAAGCTCACCACCGTTATTTTCTCATTTCATTGCGAACTTCATTTTCTAGATTGAACTCTGCCTTCCTCGAATTGGCTCGGAGGCTGCCTTCTAAGAACATTTAAACATTAATTCTGGGGAagctttttttttaatatatatatatatatatatatacatatatatcatAGACTAATGTTTACCTACTGGAATTATTTTTTGTTATATTTTACCTGCATTTGCGTTGTGCATCAGCATAGAATGCATTTGTAACAACGGATTTTTAACGCTTGTTGGGGCTGTGCTTACAATGGTAAAATAATACGGAAATATCCTcttgaatttacatttttggtcTGAACAAATACAACTATTTGTTAGACTAATCATATGACTGAAAATAAGCATGGAGGGGTCTCCTTTGAAGATACTGATTTCTCTCTGGTGTCCGCTCATGATTGCTGCCTACAGTGTGGAGCTAGGAACATACGACCTAGAACGAGGGAGACCAGCCAAATGCGAACCCATAGTAATTCCCATGTGCCAGGGCATTGGCTACAACATGACCAGAATGCCCAATTTTATGGACCATGAAAACCAAAAAGAGGCTGCCATCAAGCTGAATGAGTTTGCACCTCTAGTGGATTACGGCTGTGATGTGCACCTTCGTTTCTTCCTCTGCTCACTCTATGCCCCAATGTGCACTGATAAAGTGTCTACCTCCATCCCAGCCTGCAGGCCTATGTGTGAGCAGGCCAGGCAGAAGTGCTCACCCATTATGGAGAAGTTCCACTACGCATGGCCTGACTCGCTGGATTGCTCCAGGCTCCCGACCAAGAATGACCCCAACGCGCTGTGCATGGAGGCTCCAGAGAACGACACCAAGACGGATATCAAGAAGGGAGAGGACATGCCTTTTGTTCCCCCTCGGCCCAGGCAACCGGGTAGCAGTAACGGGCGCTCCATGGGCAGTCTGGGGTCCTGCGAGAACCCAGAGAAGTTCCATTATGTGGAGAAGAGCCAGTCGTGTGCTCCTCGCTGCTCCTCTGCAGTGGACGTGTTCTGGTCCAGACGGGACAAGGACTTTGCCTTCATCTGGATGACAGTGTGGTCAACACTCTGTTTTGTCTCCACGGCCTTCACCGTTCTCACCTTCCTCCTGGACCCCCACCGCTTCCAGTACCCCGAGCGGCCCATCATCTTCCTCTCCATGTGCTACAACGTCTACTCTGTGGCCTTCATCATCCGCTCGGTGGCCGGGGCCGAGAACATCGCCTGCGACCGGGAGAATGGCGAGCTCTACATCATCCAGGAGGGGCTGGAGTCCACAGGCTGCACCATCGTCTTCCTCATCCTCTACTACTTCGGTATGGCCTCGTCCATCTGGTGGGTCATCCTCACCCTCACCTGGTTCCTGGCCGCTGGTAAGAAGTGGGGCCACGAGGCCATTGAGTCCCACAGCAACTACTTCCACATGGCCGCCTGGGGCATCCCAGCTCTGAAGACAATCGTCATCCTCACCATGAGGAAGGTGGCAGGGGATGAGCTGACGGGTCTGTGCTACGTGGGCAGCATGGACTCTGGAGCGCTCACCGGCTTTGTGCTCATCCCTCTGTCCTGCTACCTGGTCATTGGCACGTCCTTCGTCCTCACCGGCTTTGTGGCGCTCTTCCACATCCGCAAGGTGATGAAAACCGAAGGCACCAACACGGAAAAGCTGGAGAAGCTAATGGTGAAAATCGGCATCTACTCCATCCTGTACACAGTGCCCGCCACCTGCGTCATCATCTGCTACTTCTACGAGAGGCTTAACATGGACTACTGGAAGTTCATAGGTCTGGAGGTCAAGTGCGTGTCGTTCCCCGGGCGCCGGAACGAGGACTGCTCCCTGGAGTCGTCGGTGCCCACTGTGGTGGTGTTCATGCTGAAGATCTTCATGTCCCTGGTGGTGGGCATCACcagtggtgtgtgggtgtggagcTCCAAGACCCTGCAGACCTGGCAGGGCCTGTGCAGCAGGAAGCTGGCATCAGACAGGACTAGCAGGAAGCCCTGTGGCAGCGTGAGCTGCAGCACACACTGTCATTACAAAACCCCTGCCGTGGTGCTCAACATGGCCAAGACAGACCCTTACTCAGACAGCCCCACACATGTCTGACGCTgacagtcagtatattaccagtATGCAGTTCATTCAATGCTCTGTCTAAACACAGGAAGCTACTGGGGTGACATTGTAATATATAGAATAAGAATAAGATTGAGattgagaggaaggagagaagttaTAATTCAACTGTCCATTGTTGCTTTTCTGTGCAACTTTCCTTATTTCAGTATTAATGGGAAATGTTCAGTATTGCTCTCTATAAACACACAAGATGTGTGGACTGTATTGCATAGAGATGCTCAACTGCAATGCAGAAAAGGCCTTGCATGGACATTTTAAAGGAGAGGCATTGTTCTCCCCCGAACTGGGTATAAATAACTACATAAATAAGTTTAAATGTTAAACAGTCTATttattgtatatatatttaattgaAGTTTACTTTGGTTTCTCACACGTTTTGATTGGAGTGAACATGAATCCATGAGGCTAAAATAGTAAACTACTGAGCATCAAGGAAAATACAGTGCCTCTTATTGGGTTCTTAAGAATAATACAATTGGGTATACATTTGGTCGTGGTTTATTTACTATTATTAAATTGAGTGTGAATCCTATACATTTTTCAATATGGCTTAGTTTCATTGGATTGATTGAGAAAATTATATTGAGACTTGGGAGGAAAATGCATTGACAAAAAATATTGAATTTTACAATGTCTTTGATAATAATTTGGctctataataaataaatataattctTACAAAATGAGAAGTTTGTTAGATTATATATGGCTATAGATATCCATGATTCATTCATGTCATTATTCCAGGACGACCAGAATTAATCAGATGTGCTAGACTGGTTGAAGTAGACTGTAGTAGGGTTAATTCTGTTTTAGGTGAAGTAGACTGTAGTAGAGTTCATTCTGTTTTAGGTGAAGTAGACTGTAGTAGGGTTCATTCTCTTTTAGGTGAAGTAGACTGTAGTAGGGTTCATTCTCTTTTAGGTGAAGTAGACTGTAGTGGGGTTCATTCTGTTTTAGGTGAAGTAGACTGTAGTAGGGTTCATTCTCTTTTGGGTGAAGTAGACTGTAGTAGGGTTCATTCTCTTTTGGGTGAAGTAGACTGTAGTAGGGTTCATTCTGTTTTAGGtgaagtagactagtagagttcATTCTGTTTTAGGTGAAGTAGACTGTAGTAGGGTTCATTCTGTTTTAGGTGAAGTAGACTGTAGTGGGGTTCATTCTGTTTTAGGTGAAGTAGACTGTAGTAGGGTTCATTCTGTTTTAGGTGAAGTAGACTGTAGTGGGGTTCATTCTCTTTTGGGTGAAGTAGACTGTAGTAGGGTTCATTCTCTTTTGCAAATGAAAGGTAGCCTAATTCCTATGGTAATGCCAACATGCAAATATCAACTGTAATCATTTGGAGAATTGGAGAATTTTTCTCAATATAAGGATAAATGCAACAGTTTATATTCCTAACTTTTGTAGCCTAATACGCCCATTTCTTCTTACTCCAAAGCCTCTTTGAACACATTTATCACAGGACAATAAGGCCAACATTTGTTGTTTATTTTCCTGTCGACCATTTGGTCCTTAATTTCCTCTCCTGCTTTGAAGCAATTTTCTACAGTGAGAATCGCGTGCCATATGTTCAACTGCATATAAGCTAGATCCTGGAAGCAACATGGACACACTATTCCTCAAAGAGAATTGGAGATGAATAGAGGGGCAATCCAAGTAGTCTCAAGGTTTGGGTCATCATCTTTAAAGAGATACTTCCTGGTTTTgacaatgaagccctttatctacttccagtcagatgaactcatggataccattatgtctctgcatccagtatgaaagAAGTCAGAGGCAGTTTTCCGATCCAAGGCTAACCAGCGTTAGCGCAataactggaagtctatggtatctactagcataCTAGCAGTTACCATAGACGTCCAGCCATTGCGCTAACGCTTGTTAGCAACTTTCTTCAAACTGCAGGCAGAGACATACAAAGGGTAGGCCTATTcaagagttcatctgactctggggaagtagatatagggcttcattgccaaaaccCTGAAGTATCCTTTTAACATGCGGGAGCTGTTCACAGAGAAATATATTTAATGGGTGTGCTAATCCTTTCCCTGAACCACTATTgtgccctgtcctcctctctgtttGATCCCCATGCAAATACATGGCACTTTGATCCAGGAGGAGGAATTTGAAGTAGGCCATCTAGATCTCagcactagtccaacgctttacaCCTGAATTGGGAGGAAATTAATTGACGATTTCTATTTGACCAAAAAGTTTCACAAATGTCATACTACATGCTACATATTGGTCATTGGTTGCATGGCTTTGTCTCAGTTTGAATTTGGCACATTCAAGCCTTATGTTGCCAGCAACTGTTCTCAGTAAATTAGGGTGTCAATGTCAATTATAAGCACACCCGAATATAAGAGACCATTTGTTTCACAGCAGGCTTGCTGGGATGCATGGTGTTTGACAGTAAATGTAATtgtttatgtctgtctgtgtaattGTGTTCCGTGTCAGGCAACACGAGGTGATGGCATGGAAAGATGTGAGGACCAAGAGTTACATTTACATCAGACTGCTGCTCACTTTAACGTTTAGATTTTGTCAAGCTTTATAGACGGAGGTGTTGTGTTGTggtttttcatttaacctttgTTAGACACCATCAACTTTAAGATTACAGCAATTTAACCAAATCATTTAAGTTGAGAAGACAGTCTTTGCAGAACAGAGTATCATATtgtattatagtgtgtgtgtgtgggcacatATGTAAGGAGGGAGAGGTAGATGGGGGTTAACCTCTGTGTTTTCCTCGCTTGGCCATTATAGACATTGTCCATTGCTTAGCAGAGAGAGCTGAAGTCTTGACATTGCCAACCACATTTAACTATCAAAAGTGAGTGTGAGTTTCCTTTGAAGCATGTCGCTGGGACAGAATAACTGGAGTTAAAGCCACATGCACCAGTTCACGTACGGTTGAACGAGCTGCTGGCTTCCTCTCGGGATTACGCTCTGTGACATGACCCAGTGAGGTGAAACACTTGCTCTTAAAAAACAGCCAGTCCCACCTGTGTTTTCTGTGATTAGATAGGAACTGCAGTCTGTTTAGGACAAGGGCTGAGTTAGGAGATATGGAGGTACTTAATGTATTTGTGTTGCTAGACAGAGAAAACAAATCCCCAAAGACAACATGCGGTGATTGGAGTAACAGGGAGCGTTTGCAACCGTTTGTTGTTTATAAACCTTGTTCAATGAGGCTTGTTCCATGATTGAATGCTGTCCGAACATGTTAGTGCCAGTAGCTTGTGTATTTTCTAGCTGTCTCCAGAGGAAAAACTTGTTCAGACTCACAACACCACTGAACTTCTGTTACGATTGTCTGAATGAATGGACCAAGGCCCAGCGTACTTAGAGatccacatgtttaataaatatgaaacttgcctcccgggtggcgcagtggttaagggcgctgtactgcagcgccagctgtgccatcagagtccctgggttcgcgcccaggctctgtcgt

Function

NR:

description
frizzled-9-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0030183 B cell differentiation biological_process
GO:0007405 neuroblast proliferation biological_process
GO:0007420 brain development biological_process
GO:0001944 vasculature development biological_process
GO:0009790 embryo development biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0031527 filopodium membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02842 FZD9_10, CD349_50; frizzled 9/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587714.2 True 5848 mRNA 0.44 1 13715887 13721734
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110507077 LOC106580873 coding downstream 86030 13581151 ~ 13629857 (-)
LOC118944789 NA coding downstream 121876 13593905 ~ 13594011 (-)
LOC110507613 LOC106612579 coding downstream 167984 13542007 ~ 13547903 (-)
LOC110507606 LOC106580867 coding downstream 188383 13472445 ~ 13527504 (-)
klc3 LOC106580868 coding downstream 263249 13440494 ~ 13452638 (-)
LOC110507615 LOC106580878 coding upstream 17128 13738862 ~ 13748179 (-)
LOC110507619 LOC106580882 coding upstream 33508 13755242 ~ 13757825 (-)
LOC110507078 shbgb coding upstream 136479 13858213 ~ 13861681 (-)
rasa2 rasa2 coding upstream 151807 13870719 ~ 13917963 (-)
zbtb38 LOC106580872 coding upstream 200259 13921993 ~ 13937776 (-)
G2054441 NA non-coding downstream 22918 13692544 ~ 13692969 (-)
G2054416 NA non-coding downstream 68741 13646856 ~ 13647146 (-)
G2054415 NA non-coding downstream 74555 13641027 ~ 13641332 (-)
G2054412 NA non-coding downstream 77116 13638534 ~ 13638771 (-)
G2054410 NA non-coding downstream 89742 13625880 ~ 13626145 (-)
G2054572 NA non-coding upstream 207438 13929172 ~ 14017539 (-)
G2054583 NA non-coding upstream 263423 13985157 ~ 13986650 (-)
G2054632 NA non-coding upstream 311186 14032920 ~ 14065449 (-)
G2054301 NA other downstream 243474 13456485 ~ 13472413 (-)
G2054307 LOC106612521 other downstream 311888 13401764 ~ 13403999 (-)
G2054116 NA other downstream 717771 12997616 ~ 12998116 (-)
G2053344 LOC101073377 other downstream 913940 12794967 ~ 12801947 (-)
LOC110507082 LOC106580920 other upstream 811253 14532256 ~ 14719525 (-)
G2056115 NA other upstream 1654481 15376215 ~ 15376515 (-)
LOC110507646 LOC106612894 other upstream 3273826 16756597 ~ 17064214 (-)
LOC110507661 LOC106581010 other upstream 3742787 17464437 ~ 17481646 (-)

Expression

LOC110507614(LOC106580877) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC110507614(LOC106580877) Expression in each Bioproject

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LOC110507614(LOC106580877) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network