LOC110507615 (LOC106580878)


Basic Information

Item Value
gene id LOC110507615
gene name LOC106580878
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 13738862 ~ 13748179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587715.2
TGCTCAGTCCCACCAGGGACCTGGAGAGAATTGGAAACACTACAGGGAAGCACACACAGGGAAAGAACACAGTCTTAGCATCATCTTACAGCGGCCTTAGCTCCCTGCTCAGCCACACTGTGTAGTAGGGACAACCCAACGCAGCAGCCGCCAACATGTGTGACATGGGGGGATTGGATAATCTGGTGGCGAACACGGCCTACCTTAAGGGGGGTGACGAAAAAGAGATGAGGAAGAGGCGGCGTAGCCTGTCCCTGCCCAAGCcagaacagtgtgtgtccatcCGCGCCACGGTTGGGAAAGAATTTGAGATGCTCTGCGAGAGGCAGCCCATAGGCAAGAAGTTCTTCCGGCAGTTCCTCCTGGAGTCCAACCCGCAGTACGTGGCGGCCGCAGAGTTCCTGGACGAGTTAATCGACTGGGATCTGGCAGAAGGCGCTGGCAAAGATAAGGCGAGGATGAACATCATCAACAAGTTCTGCAAGGCTGACTCCAAGAACTTCCTGTCCTACCTGACGGGAGAGGTAGCGGACAAGTGCAAGGCGGTGTCGGACAAGGACTTTGAAGACGTGATGATGGGCAAGGTGAAAGATGCCACGCGGGAGTACCTGAAGGAAAAGCCCTTCACAGAGTACCAGACCAGCCCTAACTTTGACAAGTTCCTGCAGTGGAAAGAGTACGAGAAACAGAAAATCACTGATAAGTATTTCTATGAGTTCAGGACCCTGGGTAAGGGAGGCTTTGGAGAGGTGTGTGCCGTGCAGGTGAAAAACTCAGGCCAGATGTACGCCTGCAAAAAGCTGTGCAAGAAGCGTCTGAAGCAGAAGAATGGTGAGGGCATGGCACTGCTGGAGAAGCAGATCCTGGAGAAGGTTAACAGCCTGTTCCTGGTGAACCTGTCCTATGCCTACGACTCCAAGACCCACCTGTGCCTCGTCATGACCCTGATGAATGGCGGCGACCTCAGGTACCATATCTATAACATTGGTGAAAAAGGCCTTGAAATAGGCCGCATCAATTACTACATTGCACAGGTCACCACAGGAATCCTCCACCTACACGCCATGGATATAGCGTACCGAGACATGAAGCCAGAGAACGTGCTACTGGACAGCTTCGGCCAGTGTCGACTCTCGGATCTGGGGTTGGCCGTGGAGCTGCCTGGCGAAAAGACCATCAATCAAAAGgcTGGCACAAGTGGCTACATGGCCCCAGAGATCCTGAAGAAAGAGCCTTACCGGATGTCAGTGGACTGGTGGGCACTGGGCTGCAGTATCTATGAGATGGTGGCAGCTCGCCTGCCCTTCAAGGACTATAAGGAGAAGGTGCAGAAGGAGGAGGTGGCACGGCGCACCCTCGAGGATGAATGCAAGTACGAGCACAAGAACTTTGACGAGGGCACCAAAGCCATCATCAACCTCTTCCTCAAGAAGAAAATTGATGAGCGTCTGGGATGCAGGACCAAGAATGAGGACCCAAGGAAGCATGAGTGGTTCAAAGGCATTAACTTCCCTCGACTGGAGGCGGGGCTGATCGACCCACCATGGGTCCCCAAGCCCAACGTGGTCTACGCCAAAGACACGGGGGACATCAAAGATTTCTCTGAGATTAAGGGTGTCGTGTTTGACGACAAAGATGACAAATTCTTCAAGGAGTTCAACACGGGGGCTGTGCCCATTGCATGGCAACTGGAAATGATTGACAGCGGACTTTTTGACGAGCTGAACGACCCCAACAGGAAAGAGTCAGCCGCTGGATTGGACGACGAGGAGAAGAAATCAAAATCCTGCACGCTTTTATAAAATCTCCTCTATACTATAGTTAGCTTTGAAAATGACAAAAGTCCTATCTCATTAAGAACATTGTGACGATAATCATAGCCACAAAAAAATATGTGAAGTGGTAGTAAAATCCAGAGCCAGGTCAAGACACATATTTCCACCACTTCACACATTTTTTTGTGGATATGATTCTTCCTGCTCTATGACATTGTAATGATCATGATAAGCCACAGCACTTACGATGATATCAGGAATCGATAAGGTGATTTTGTCTATATCAATGGGCAGGGTCAGTGTCTGTGGTAGAATCAACAGGAAAAAGCTAGACTAGAGCTGGAATGGGGACTGTGCTTTACAGGCACTGGCAGAGTTGCGGTAGCAGGCTTATACCACAAGGTGTCCCCAGATATCTAGATATGTGGATATTCACAAGTCTTCTCAATATTGTTGACCTGCTTGAAAAGTCTTGCCTTTTTTTAAAAATGCATCGATCACCTGTGCATTTTTGAGTGAGATGTGGTTTTATTGGATTGCAAAGCTTTAACTCTTAAAGCCTTAGAGAGCATGAACTCTCACTTCTTCACCACTATATTCCAATGACCAACAAACTCCCAAACCACATTTTGACAAATGTATAATAGACCTGTAAAATGGATCTCACTGTGTTCAGTCTTATAAGCTATTTTGTAATAGTGATATGTAGGGTTTCTTTCAAGTGCACTATAACAATGTATATGCTAACTTATTTTCACCCATTAGTTAcatttaaaggcccaatgcagctgtgtttatatcaatatcaaatcatttctgggtaacaatgatgtaccttactgtaatagtatTCCATTAAAATGAACAAAAATAGATTTTTACCAAATaactatttctcaagcaagaatgttgctaggactgtctgggagtggtctgagtggggtgggaaaactgaaaactagc
>XR_002471151.2
TGCTCAGTCCCACCAGGGACCTGGAGAGAATTGGAAACACTACAGGGAAGCACACACAGGGAAAGAACACAGTCTTAGCATCATCTTACAGCGGCCTTAGCTCCCTGCTCAGCCACACTGTGTAGTAGGGACAACCCAACGCAGCAGCCGCCAACATGTGTGACATGGGGGGATTGGATAATCTGGTGGCGAACACGGCCTACCTTAAGGGGGGTGACGAAAAAGAGATGAGGAAGAGGCGGCGTAGCCTGTCCCTGCCCAAGCcagaacagtgtgtgtccatcCGCGCCACGGTTGGGAAAGAATTTGAGATGCTCTGCGAGAGGCAGCCCATAGGCAAGAAGTTCTTCCGGCAGTTCCTCCTGGAGTCCAACCCGCAGTACGTGGCGGCCGCAGAGTTCCTGGACGAGTTAATCGACTGGGATCTGGCAGAAGGCGCTGGCAAAGATAAGGCGAGGATGAACATCATCAACAAGTTCTGCAAGGCTGACTCCAAGAACTTCCTGTCCTACCTGACGGGAGAGGTAGCGGACAAGTGCAAGGCGGTGTCGGACAAGGACTTTGAAGACGTGATGATGGGCAAGGTGAAAGATGCCACGCGGGAGTACCTGAAGGAAAAGCCCTTCACAGAGTACCAGACCAGCCCTAACTTTGACAAGTTCCTGCAGTGGAAAGAGTACGAGAAACAGAAAATCACTGATAAGTATTTCTATGAGTTCAGGACCCTGGGTAAGGGAGGCTTTGGAGAGGTGTGTGCCGTGCAGGTGAAAAACTCAGGCCAGATGTACGCCTGCAAAAAGCTGTGCAAGAAGCGTCTGAAGCAGAAGAATGGTGAGGGCATGGCACTGCTGGAGAAGCAGATCCTGGAGAAGGTTAACAGCCTGTTCCTGGTGAACCTGTCCTATGCCTACGACTCCAAGACCCACCTGTGCCTCGTCATGACCCTGATGAATGGCGGCGACCTCAGGTACCATATCTATAACATTGGTGAAAAAGGCCTTGAAATAGGCCGCATCAATTACTACATTGCACAGGTCACCACAGGAATCCTCCACCTACACGCCATGGATATAGCGTACCGAGACATGAAGCCAGAGAACGTGCTACTGGACAGCTTCGGCCAGTGTCGACTCTCGGATCTGGGGTTGGCCGTGGAGCTGCCTGGCGAAAAGACCATCAATCAAAAGgcTGGCACAAGTGGCTACATGGCCCCAGAGATCCTGAAGAAAGAGCCTTACCGGATGTCAGTGGACTGGTGGGCACTGGGCTGCAGTATCTATGAGATGGTGGCAGCTCGCCTGCCCTTCAAGGACTATAAGGAGAAGGTGCAGAAGGAGGAGGTGGCACGGCGCACCCTCGAGGATGAATGCAAGTACGAGCACAAGAACTTTGACGAGGGCACCAAAGCCATCATCAACCTCTTCCTCAAGAAGAAAATTGATGAGCGTCTGGGATGCAGGACCAAGTAAGAGCTGACCGCAGTTTCAGCCCAGAGATATTCCTGACTACATGGCCGAACCAGGAACAACTCTAGGGCCCTCTAGAGGTTTTCCTGGAATGAGGACCCAAGGAAGCATGAGTGGTTCAAAGGCATTAACTTCCCTCGACTGGAGGCGGGGCTGATCGACCCACCATGGG

Function

NR:

description
rhodopsin kinase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587715.2 False 2738 mRNA 0.48 4 13738862 13748179
XR_002471151.2 True 1638 mRNA 0.54 4 13740052 13748179
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110507614 LOC106580877 coding downstream 17128 13715887 ~ 13721734 (-)
LOC110507077 LOC106580873 coding downstream 109005 13581151 ~ 13629857 (-)
LOC118944789 NA coding downstream 144851 13593905 ~ 13594011 (-)
LOC110507613 LOC106612579 coding downstream 190959 13542007 ~ 13547903 (-)
LOC110507606 LOC106580867 coding downstream 211358 13472445 ~ 13527504 (-)
LOC110507619 LOC106580882 coding upstream 7063 13755242 ~ 13757825 (-)
LOC110507078 shbgb coding upstream 110034 13858213 ~ 13861681 (-)
rasa2 rasa2 coding upstream 125362 13870719 ~ 13917963 (-)
zbtb38 LOC106580872 coding upstream 173814 13921993 ~ 13937776 (-)
LOC118944762 LOC106580903 coding upstream 190472 13938651 ~ 13940567 (-)
G2054441 NA non-coding downstream 45893 13692544 ~ 13692969 (-)
G2054416 NA non-coding downstream 91716 13646856 ~ 13647146 (-)
G2054415 NA non-coding downstream 97530 13641027 ~ 13641332 (-)
G2054412 NA non-coding downstream 100091 13638534 ~ 13638771 (-)
G2054410 NA non-coding downstream 112717 13625880 ~ 13626145 (-)
G2054572 NA non-coding upstream 180993 13929172 ~ 14017539 (-)
G2054583 NA non-coding upstream 236978 13985157 ~ 13986650 (-)
G2054632 NA non-coding upstream 284741 14032920 ~ 14065449 (-)
G2054301 NA other downstream 266449 13456485 ~ 13472413 (-)
G2054307 LOC106612521 other downstream 334863 13401764 ~ 13403999 (-)
G2054116 NA other downstream 740746 12997616 ~ 12998116 (-)
G2053344 LOC101073377 other downstream 936915 12794967 ~ 12801947 (-)
LOC110507082 LOC106580920 other upstream 784808 14532256 ~ 14719525 (-)
G2056115 NA other upstream 1628036 15376215 ~ 15376515 (-)
LOC110507646 LOC106612894 other upstream 3247381 16756597 ~ 17064214 (-)
LOC110507661 LOC106581010 other upstream 3716342 17464437 ~ 17481646 (-)

Expression

LOC110507615(LOC106580878) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110507615(LOC106580878) Expression in each Bioproject

Bar chart with 14 bars.
LOC110507615(LOC106580878) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network