LOC110507622 (LOC106580885)


Basic Information

Item Value
gene id LOC110507622
gene name LOC106580885
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 13991372 ~ 14059262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965222.1
AGCCAGTCAGCTCTCTCGCTCAGTAGCAGTGCACACAGCCAATCTACAGCATCCCTACCAGCCTGCTTCTTACATTCACACACTCTCCATTCAGCTCCCTCATCAACACACCGAGATAGCAGAGCGACCAGCAGCTTACTCACTAAGCCAGAGCTAAGAGgaacagagagcaagagacaaaTAAGGGATAAACATACATAAGAGAATATGAGGATGCCTGTGCCCACGCAGCGCCCCCTGTACCTACTCCTGCTTCTGCTGAGTGCCGGGGTTGGgggtctctcctcccctcttgaTCTGGAGCCACCTGCTCCGGAGGCTGCTGCCCCGGTTGAGGCTGACCCCACCCAGGCCACTCCCCTGCCTGACCCCTGCGAGGGACGGCCCTGTCTCAACGGAGGCGCCTGCTCGGCCCAGCCCTCCGACCCGGAGACAGAGGACACTCTGCCCAACACCTGGGCTTACAGCTGCACCTGCACCTCCGGCTCCACCGGACGCAACTGTGAGTTTTTCACAGACCCCTGTGCCAACAGCCCATGTTTCCATGGCAACTGTAGCCGCAGTGGTGAGAGCGAGGAGTACACCTGCGAGTGCAGCGAGGGGTACGAGGGGGAGAAGTGTGAGCAGGGCACCTTGGACCTGCTGCCTGTCTCCAACTGGGATCCTGCCACACCCCCTGCCCCCGAACAGGCCACACCCGCCACACCCACAACTGCCACTCAGCCCTCCCAGCCAACAACAGTGTCCAGCACCACGCAGGCACCTCCGACGCTGCAACCGTGGCAACCTAAGGCTGGACAGAGACTCTTGGTGGTGCAGTGGGAGAAGGAACAGGTGACGGAGGGACTGCACTGTGTGAGTCCTGAGCTGTGTGAGCTGACCTCTGgaactctgactctctctctagaGGTGCCTGAGGAGACTGCCATCAAGATCGTAGTGAATGTCAGTGGAGCGCCCGTCCTTTGGCGTGTTGGAGAGGATGGCTTCCAGCGTTCCTCCTTGGTGGAGGGGACCATCATGTGGTTCCAGCAGGCCTCAGATGGACTGGTGGTCCCTGACCACTCCCTCCCCCTTGGACACAACTACTTCCTCAGTGTGCTGCGCGTGGGCACCCCCAGTGGCTCGGAAGTCACCCTGCGTCTCAATCTGACAGTGAAGGCCAGCAGCTGTGTGGAGCCTGGCAGCCGCTTCAGCGACCCACAATGCTCTGGGAAGGGGAAGTGCATCACCCAGCCCTCTGTGagcaccttcttctgtGAGTGTGAGAATGGTTACTCTGGAATCTTCTGTGAGGAGTTTGATGCCTGCCACCTCAAGCCCTGCCAGAACTACGCCATCTGTAGTGACCTGAGGCAGGGGGACGAGGGCCGCAACTTCACTTGTATCTGCCCTCCAGGGTTCGAGGGTGGTCTTTGCCAGTTGCAGGTGGACCACTGCCTGTCTCAGCCCTGCAGGAACGGGGCTACCTGCTCCAGCAGCCTGGCTGGACCCAGGTGCTACTGCCCTGAGGgGTATCAGGGCAGTATGTGTGAACAGAGGGTGGACCCATGTGCCTCCAGCCCCTGCCACAACAACGGGAGCTGCTTTCCCCAGGGTCCCGGCCTGGGCTTTGGCTGCAGCTGTGCCGCCGGCTTTACCGGCCCGACCTGTGCCCAGTTGGTGGACTTCTGTGCCCTCAACCCCTGTGCCCACGGGATTTGCCGCAGTGTGGGCACTAGCTTCAGGTGTCTGTGTGTCCCAGggtACCATGGTCTGTACTGTGAGGAAGAATACAACGAGTGTCTGTCAGCCCCCTGCCAGAACTCTGCTACCTGCAGAGACCTCATCAACGCTTACGAATGTGCCTGCACTCCCCAGTATGaagGCAGACACTGTGAGATCTACAGGGATCCTTGTCTGAAGGCTCACTGTCAGAACGGAGGACACTGTGAGAGTGTGGGCTTTAACGCCACCTGTGTCTGCCCACCTGGTTACCTTGGGGAGGACTGTGAGGTTGACATCAACGAGTGTGAGAGCAATCCCTGTCATCACGGAGGAACCTGCATCGACCAATCAAATGCATACACCTGCCACTGCCCCCCAGGCTGGGTAGGGGCCAGCTGTGAGATACacTTGCAGTGGAAGACCACCCACCCCGAGGACACCCTGACCAACATGCCACGTCACTCCCTCTACATCATCATTGGCGCCCTGTGCGTCGCCTTCATCCTCATGCTCATCATCCTCATCGTGGGCATCTGCCGCATCAGCCGCATCGAGTACCAGGGCTCATCTCGCCATGCCTACCAGGAGTTCTACAACTGCCGCAGCATCGACAGCGAGTTCAGCAACGCCATCGCCTCCATCCGCCACGCCAGaTTTGGGAAGAAGTCCCGGCCGGCAATGTACGACGCTGCACCCATCACCTACGAGGACTACAGCCCTGACGACAAGCCCCTGGTCACTCTGATCAAAACAAAAGATTTGTAGAAAACACAGCGgcaacacacccacccacacacagtatcacgcatcacctgttcacacacacaaCTAACTACACATGTTCGGCCGTGCACCAAAACACACAAATTCAGTTAATGCAAACCATTTAGTATTTCTTTAGATAAAAATGAACAAAATAAATGTAGTGGAGAAAAAACCCAAACAATAGTTATGTGGGAAATGTGTTGGAATATCCATAAAGCTACTGTAGCATAAGAGCGTACCTTTTTTAGTAGGTGTTGGGTGATACCGCCATCTTGGTTGCTTCTTCTCTCCAGTAGACTGTGACTACATTACCCAGGATGCCATTGGGTTCCTAGAGGGGGTGGTTCCTGATGTCCCTCACCGACCCATGAGCTCAGTTTAAAGTGTAGATTCAGCAGAGGCTGTTGATAGGAGTTCTTACAGGTGTGGTAGAAATAGGTGCACTTGTCATAGTGCAGTACGATATATCTTTCTATATAAAAAATCTACAGTAGGTTGCCTTACTTGGTGCATGGGTAGATTCAATGTTTTCTGCATAATTTTGAAACCCTCCGTATATTGTGGTTGATTTACTGTGTCTTTGCCAGGTTTATGGCAAAATCGTCACTTCCTTCAGGAAACAACGTCAGGGTAGAGGTAGAAGAGATGTACACTATGGAGGGAAGCTTTAGaacagcatttaaaaaaaacattggttGTCATGTTTTTATTATTTACATGCAAGTTCTGTACAAATAAAGGAAGAGTAATAATTGTGTTTTTTGCAGGAGTGGTCGGAGTAGCCAGTGGGCGGGTCTTGAGTGGATGACTGACAGGTGGGGTGAGCGGGTCTTGAGTGGATGATTGACAGGTGGGGGTCAGCTGGTGGGTCTGCTCCAGTAATATATGTGCTTCTGTGTCCCAGgtataggtctctctctctctctctctctctctctctctctctctctctctctgtctgtgtgcggTTGTGTTGTTCCACTCAGGGTCAACCCCTGGGTGCATTCGTTTGGGGCGCCGGATGGGCGGCAcattttagaccattccattggttCTTTAGAAATCTCCGCCCACCCGGAGCACCGAGTGAGCACTCCACTTGACTGATGTTTTGCCTACTAGGGTcgtcttttttttaaagagaagAACCACATGAATATTATCTATGTTCAATGATGTAACAATAAAGGTTGAAGTGAACACAAACCCA
>XR_005040015.1
AGCCAGTCAGCTCTCTCGCTCAGTAGCAGTGCACACAGCCAATCTACAGCATCCCTACCAGCCTGCTTCTTACATTCACACACTCTCCATTCAGCTCCCTCATCAACACACCGAGATAGCAGAGCGACCAGCAGCTTACTCACTAAGCCAGAGCTAAGAGgaacagagagcaagagacaaaTAAGGGATAAACATACATAAGAGAATATGAGGATGCCTGTGCCCACGCAGCGCCCCCTGTACCTACTCCTGCTTCTGCTGAGTGCCGGGGTTGGgggtctctcctcccctcttgaTCTGGAGCCACCTGCTCCGGAGGCTGCTGCCCCGGTTGAGGCTGACCCCACCCAGGCCACTCCCCTGCCTGACCCCTGCGAGGGACGGCCCTGTCTCAACGGAGGCGCCTGCTCGGCCCAGCCCTCCGACCCGGAGACAGAGGACACTCTGCCCAACACCTGGGCTTACAGCTGCACCTGCACCTCCGGCTCCACCGGACGCAACTGTGAGTTTTTCACAGACCCCTGTGCCAACAGCCCATGTTTCCATGGCAACTGTAGCCGCAGTGGTGAGAGCGAGGAGTACACCTGCGAGTGCAGCGAGGGGTACGAGGGGGAGAAGTGTGAGCAGGGCACCTTGGACCTGCTGCCTGTCTCCAACTGGGATCCTGCCACACCCCCTGCCCCCGAACAGGCCACACCCGCCACACCCACAACTGCCACTCAGCCCTCCCAGCCAACAACAGTGTCCAGCACCACGCAGGCACCTCCGACGCTGCAACCGTGGCAACCTAAGGCTGGACAGAGACTCTTGGTGGTGCAGTGGGAGAAGGAACAGGTGACGGAGGGACTGCACTGTGTGAGTCCTGAGCTGTGTGAGCTGACCTCTGgaactctgactctctctctagaGGTGCCTGAGGAGACTGCCATCAAGATCGTAGTGAATGTCAGTGGAGCGCCCGTCCTTTGGCGTGTTGGAGAGGATGGCTTCCAGCGTTCCTCCTTGGTGGAGGGGACCATCATGTGGTTCCAGCAGGCCTCAGATGGACTGGTGGTCCCTGACCACTCCCTCCCCCTTGGACACAACTACTTCCTCAGTGTGCTGCGCGTGGGCACCCCCAGTGGCTCGGAAGTCACCCTGCGTCTCAATCTGACAGTGAAGGCCAGCAGCTGTGTGGAGCCTGGCAGCCGCTTCAGCGACCCACAATGCTCTGGGAAGGGGAAGTGCATCACCCAGCCCTCTGTGagcaccttcttctgtGAGTGTGAGAATGGTTACTCTGGAATCTTCTGTGAGGAGTTTGATGCCTGCCACCTCAAGCCCTGCCAGAACTACGCCATCTGTAGTGACCTGAGGCAGGGGGACGAGGGCCGCAACTTCACTTGTATCTGCCCTCCAGGGTTCGAGGGTGGTCTTTGCCAGTTGCAGGTGGACCACTGCCTGTCTCAGCCCTGCAGGAACGGGGCTACCTGCTCCAGCAGCCTGGCTGGACCCAGGTGCTACTGCCCTGAGGgGTATCAGGGCAGTATGTGTGAACAGAGGGTGGACCCATGTGCCTCCAGCCCCTGCCACAACAACGGGAGCTGCTTTCCCCAGGGTCCCGGCCTGGGCTTTGGCTGCAGCTGTGCCGCCGGCTTTACCGGCCCGACCTGTGCCCAGTTGGTGGACTTCTGTGCCCTCAACCCCTGTGCCCACGGGATTTGCCGCAGTGTGGGCACTAGCTTCAGGTGTCTGTGTGTCCCAGggtACCATGGTCTGTACTGTGAGGAAGAATACAACGAGTGTCTGTCAGCCCCCTGCCAGAACTCTGCTACCTGCAGAGACCTCATCAACGCTTACGAATGTGCCTGCACTCCCCAGTATGaagGCAGACACTGTGAGATCTACAGGGATCCTTGTCTGAAGGCTCACTGTCAGAACGGAGGACACTGTGAGAGTGTGGGCTTTAACGCCACCTGTGTCTGCCCACCTGGTTACCTTGGGGAGGACTGTGAGGTTGACATCAACGAGTGTGAGAGCAATCCCTGTCATCACGGAGGAACCTGCATCGACCAATCAAATGCATACACCTGCCACTGCCCCCCAGGCTGGGTAGGGGCCAGCTGTGAGATACacTTGCAGTGGAAGACCACCCACCCCGAGGACACCCTGACCAACATGCCACGTCACTCCCTCTACATCATCATTGGCGCCCTGTGCGTCGCCTTCATCCTCATGCTCATCATCCTCATCGTGGGCATCTGCCGCATCAGCCGCATCGAGTACCAGGGCTCATCTCGCCATGCCTACCAGGAGTTCTACAACTGCCGCAGCATCGACAGCGAGTTCAGCAACGCCATCGCCTCCATCCGCCACGCCAGaTTTGGGAAGAAGTCCCGGCCGGCAATGTACGACGCTGCACCCATCACCTACGAGGACTACAGCCCTGACGACAAGCCCCTGGTCACTCTGATCAAAACAAAAGATTTGTAGAAAACACAGCGgcaacacacccacccacacacagtatcacgcatcacctgttcacacacacaaCTAACTACACATGTTCGGCCGTGCACCAAAACACACAAATTCAGTTAATGCAAACCATTTAGTATTTCTTTAGATAAAAATGAACAAAATAAATGTAGTGGAGAAAAAACCCAAACAATAGTTATGTGGGAAATGTGTTGGAATATCCATAAAGCTACTGTAGCATAAGAGCGTACCTTTTTTAGTAGGTGTTGGGTGATACCGCCATCTTGGTTGCTTCTTCTCTCCAGTAGACTGTGACTACATTACCCAGGATGCCATTGGGTTCCTAGAGGGGGTGGTTCCTGATGTCCCTCACCGACCCATGAGCTCAGTTTAAAGTGTAGATTCAGCAGAGGCTGTTGATAGGAGTTCTTACAGGTGTGGTAGAAATAGGTGCACTTGTCATAGTGCAGTACGATATATCTTTCTATATAAAAAATCTACAGTAGGTTGCCTTACTTGGTGCATGGGTAGATTCAATGTTTTCTGCATAATTTTGAAACCCTCCGTATATTGTGGTTGATTTACTGTGTCTTTGCCAGGTTTATGGCAAAATCGTCACTTCCTTCAGGAAACAACGTCAGGGTAGAGGTAGAAGAGATGTACACTATGGAGGGAAGCTTTAGaacagcatttaaaaaaaacattggttGTCATGTTTTTATTATTTACATGCAAGTTCTGTACAAATAAAGGAAGAGTAATAATTGTGTTTTTTGCAGGAGTGGTCGGAGTAGCCAGTGGGCGGGTCTTGAGTGGATGACTGACAGGTGGGGGTCAGCTGGTGGGTCTGCTCCAGTAATATATGTGCTTCTGTGTCCCAGgtataggtctctctctctctctctctctctctctctctctctctctctctctgtctgtgtgcggTTGTGTTGTTCCACTCAGGGTCAACCCCTGGGTGCATTCGTTTGGGGCGCCGGATGGGCGGCAcattttagaccattccattggttCTTTAGAAATCTCCGCCCACCCGGAGCACCGAGTGAGCACTCCACTTGACTGATGTTTTGCCTACTAGGGTcgtcttttttttaaagagaagAACCACATGAATATTATCTATGTTCAATGATGTAACAATAAAGGTTGAAGTGAACACAAACCCA

Function

NR:

description
delta and Notch-like epidermal growth factor-related receptor

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24463 DNER; delta and Notch-like epidermal growth factor-related receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965222.1 False 3682 mRNA 0.54 13 13991372 14059262
XR_005040015.1 True 3647 mRNA 0.54 14 13991372 14059262

Neighbor

gene id symbol gene type direction distance location
LOC110507608 LOC106580884 coding upstream 5763 13941188 ~ 13985609 (+)
LOC110507620 NA coding upstream 54584 13917001 ~ 13936788 (+)
trnaa-ugc-188 NA coding upstream 64129 13927170 ~ 13927243 (+)
trnaa-ugc-187 NA coding upstream 99770 13891527 ~ 13891602 (+)
LOC110507616 LOC106580879 coding upstream 136458 13818342 ~ 13854914 (+)
LOC110507623 pid1 coding downstream 1612 14060874 ~ 14113581 (+)
LOC110507624 LOC106580907 coding downstream 202793 14262055 ~ 14344492 (+)
LOC110507182 LOC106580908 coding downstream 307247 14366509 ~ 14370728 (+)
LOC110507081 LOC106612519 coding downstream 311901 14371163 ~ 14372310 (+)
LOC110507158 LOC106580945 coding downstream 385117 14444379 ~ 14526200 (+)
G2053938 NA non-coding upstream 116330 13870721 ~ 13875042 (+)
G2053831 NA non-coding upstream 234801 13756183 ~ 13756571 (+)
G2053822 NA non-coding upstream 305149 13685007 ~ 13686223 (+)
G2053809 NA non-coding upstream 337393 13653772 ~ 13653979 (+)
G2054017 NA non-coding downstream 3031 14062293 ~ 14063445 (+)
G2054686 NA non-coding downstream 65575 14124837 ~ 14125039 (+)
G2054688 NA non-coding downstream 66454 14125716 ~ 14125945 (+)
G2054689 NA non-coding downstream 66864 14126126 ~ 14126480 (+)
G2054694 NA non-coding downstream 69270 14128532 ~ 14129252 (+)
LOC110507618 LOC107659943 other upstream 415877 13554250 ~ 13575495 (+)
G2053443 NA other upstream 1012449 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 1551894 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 1853573 12127441 ~ 12137799 (+)
G2051034 NA other upstream 2997784 10992985 ~ 10993588 (+)
LOC110507180 LOC106612536 other downstream 766258 14825520 ~ 14841123 (+)
G2056256 NA other downstream 1537771 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 2010308 15776205 ~ 16131560 (+)
G2056820 NA other downstream 2315004 16374266 ~ 16376043 (+)
LOC110507087 LOC106612902 other downstream 2331759 16391021 ~ 16410705 (+)

Expression


Co-expression Network