LOC110507182 (LOC106580908)


Basic Information

Item Value
gene id LOC110507182
gene name LOC106580908
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 14366509 ~ 14370728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587080.2
TATGTAGTTCATAGACAGACTAAATTCATAAATTTCCCCGACAAGGACTTGGCCAAGTGATCTACTGCTGCCTACTGTCAACAGATCCCATTTGTACACAGGACTCAGACCCAGAGGTAGTGCGTGTGAGGGGGACATAAGGGGTAGCCTACCAGCATGGGTTCCTGGGCCAAGCTGAAGTCCACTGGCTGGGTGTTTCCCACAGCCGTTTTGTCGCTCTATGGGTTCTTCGCCAACTGCAGACCAGCTGAGCCCTTCCTAACACCCTACCTTATTGGACCATACAAGAACATCTCAGAGGAAGTGGTGACCAACTACCTGTTCCCCATCTGGACGTACTCCTACCTCGTCGTCCTCTTCCCCGTCTTCCTGCTGACAGACTTCCTGAGGTACAAGCCGGTGATCGTGGTCCAGGGCCTCTTCCTGGTCACCAACTATGTCCTGCTCTGCTTCGCCCCCGGCCTGACCGCCATGACCTTCCTGCAGTTCAACTATGCCGTGGTGACCTCCACGGAGGTGGCCTACTTCTCCTACATCTACAGTGTGATCCCTCCGGAGAGGTACCAGCGGGCCACCGGCTACCTCCGCAGTGCCATGCTGACAGGCTCCACCCTAGGGGCCACCATAGGCCAGATGCTGGTCTCCCTGGCAGGGCTGGACTACTTCTACCTCAATGCTATCTCCCTGGGGATTCTCAGCATTGCGTTCCTCATCTCCATCTGGCTACCCATGCCCCAGCAGGGGATGTTCTTCAGGGGGGAGAAGGCTGCCCTGGGCCTGAGAACCAAGGGCCAGGTGGAGGAGGAAGCGAGTGCAGTGGAGGAGGTCCAGGATGCAGAAGAGGCCGTAGAGGATGGTGCTGGGTCGGGTAGGACCCAGGGTGCTGGGAGTAGTACTGGCTGGTGTAGCCTGCATAATGTGGTCTATGCTGGCAGGCTGCTCTGGAGCAGCTTCAGAGAGTCCTACTCCTCTAGGAAGCTGGTCTACTGGTCTCTGTGGTGGGCTCTAGCCACAGCTGGCTACGGCCAGGTGTTCAACTACATCCAGCTGATGTGGGACCACATAGAGCCTTCCAGCACCTCCTCTGTCTACAATGGAGGGGTCGAGGCCATCTGCGCAGTAGTAGGTGCAGCCGCAGCCTTCTGTGTGGGTCATGTAAAGGTGACCTGGGATGTCTGGGGGGAGCTGTCACTGGGGGTGTTCTCTGCGGTGGGGGCAGGGGCAGTGTTTCTGATTGGGCTCACCAGCAACATTTGGGCAAGCTATGCTGGCTACGTCATCTTCAAGGCCTCCTACATGCTGCTGATTACCATCACTACATTCCAGATTGCATCCAACCTTTCCATGGCATGCTTTGCTCTAACGTTCGGAGTCAACACTTTTGTCGCCCTCTTGCTGCAGACCATTCTCACAGCCATCGTTGTTGATGAAACTGCACTGGGGTTAGACATTATCACACAGTTCATCATCTATGGCAGCTACTATGCCGCAATATCTGTGCTTTTCCTGATCAGAGGGATGTACACAGCCTGTGCACACCACTGCCGCCCTAAACAGGCAATGGACCAGGAGCAGAAAGAAGATCCCAAAGTGGAGATGCCCTCCTCAGACCAGTTCTGTTCTGACCACAGGCAGTCGTCTATCAGAGACTGAGGGGGGCAAGGCGTCTTCAGGGGTTCACCCTAAAATGTAATGG

Function

NR:

description
thiamine transporter 2-like

GO: NA

KEGG:

id description
K14610 SLC19A2_3, THTR; solute carrier family 19 (thiamine transporter), member 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587080.2 True 1696 mRNA 0.56 5 14366509 14370728

Neighbor

gene id symbol gene type direction distance location
LOC110507624 LOC106580907 coding upstream 22017 14262055 ~ 14344492 (+)
LOC110507623 pid1 coding upstream 252928 14060874 ~ 14113581 (+)
LOC110507622 LOC106580885 coding upstream 307247 13991372 ~ 14059262 (+)
LOC110507608 LOC106580884 coding upstream 380900 13941188 ~ 13985609 (+)
LOC110507620 NA coding upstream 429721 13917001 ~ 13936788 (+)
LOC110507081 LOC106612519 coding downstream 435 14371163 ~ 14372310 (+)
LOC110507158 LOC106580945 coding downstream 73651 14444379 ~ 14526200 (+)
LOC110507181 LOC106580921 coding downstream 372335 14743063 ~ 14775758 (+)
LOC110507180 LOC106612536 coding downstream 456342 14825520 ~ 14841123 (+)
LOC110507171 usf1 coding downstream 478077 14848805 ~ 14853324 (+)
G2054876 NA non-coding upstream 15801 14350155 ~ 14350708 (+)
G2054875 NA non-coding upstream 16754 14349408 ~ 14349755 (+)
G2054874 NA non-coding upstream 17764 14348518 ~ 14348745 (+)
G2054872 NA non-coding upstream 19337 14346968 ~ 14347172 (+)
G2054871 NA non-coding upstream 19639 14346513 ~ 14346870 (+)
G2054889 LOC105030512 non-coding downstream 2816 14373544 ~ 14373782 (+)
G2054891 NA non-coding downstream 4076 14374804 ~ 14375098 (+)
G2054895 NA non-coding downstream 13507 14384235 ~ 14384465 (+)
G2054899 NA non-coding downstream 20547 14391275 ~ 14392330 (+)
LOC110507618 LOC107659943 other upstream 791014 13554250 ~ 13575495 (+)
G2053443 NA other upstream 1387586 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 1927031 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 2228710 12127441 ~ 12137799 (+)
G2051034 NA other upstream 3372921 10992985 ~ 10993588 (+)
G2056256 NA other downstream 1226305 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 1698842 15776205 ~ 16131560 (+)
G2056820 NA other downstream 2003538 16374266 ~ 16376043 (+)
LOC110507087 LOC106612902 other downstream 2020293 16391021 ~ 16410705 (+)

Expression


Co-expression Network