LOC110507174 (LOC106580954)


Basic Information

Item Value
gene id LOC110507174
gene name LOC106580954
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 15454266 ~ 15470216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587071.2
TGTGAAGGATTCCATAAAAGTTTCCCGAGGTGGAAAAGGCTTGTCTTTAGTAGGATTTTGATCATCGGTACATCTTCACTTTCACTGGAATAGAGGACCGGCTTCCTCAGTCGTTGTAGTACCAGACCTGAAACTACAGCATCATGGAAACCGAGTATTCTAAAAGGGCCTATCAAGGGGTTAGGGTCAAGCACACAGTGAAAGATTTACTGGCAGAGAAACGACAAAGACAAACAAATGGACCAAGATATAGTGGAGGAACATCCAGTCAATCGTCATTTGTCCAAATGCCAGGGTCTCACATGATCCCTGGCTACTACAGCATGAGGCGACCCTTCATCTCTGACTCGGACTTCTCCCCCAAGCAGTTTTCAGCCGATGTCTACTCCTCATCCCTTGGGGGCAAGCCTCTGGGTTGTGATTCATCAGCCATGTCGGGATACTCCTCCTTCATAGACAGCTACTACCAGGAAACGTTCGGAGACTACCGCAGTGCAGCCTTCTCCGCCGGAGGGAGCTCCATCTTCCCCAGCTCCGCCCTGTCCAGTCTGCTACCACCTTTCTCCGGAGAGTCCCCTCACTTCCTCCTGAGAGATTCGTGGGAGCAGTCAGTGGCAGACCCAGTGACCCAGGGAGAGGGCTTGTGTGCAGACAGCCTGAACTCTGTTCCAGTCTCCCTGCCCAGCCCCGACCCTCCTGGGAGCCCCTCACAGTACCGCTGCTCCACCCGCAGCTCCTCCATGGCCTCGGCACAGCCCTATGCCCTTCACCCTCTGGAAGAAATACACTATCACACTTCTTACCCTGCTGCCTCCACTTTCACATGTCCTTCCTATATGACTGTCTCCAACGACCTAGCCTCCAAGATGGCCCCTCTAGCTAATGAGGACTCTGACAGTACCCTCGCCACACATAGTGACACGCACACGTGGGTGAAAGAAGATGTCGGAAGCTCTTGGTCACCATATGAGATTCGGAGGACTTATTGAGTCAATTTGGAAACGACCTGTCCTTCACAGAAAACCAAAACAATGCTGATGCAAGCGATTCAGCTCCTTTTGATCCAAATATTTGACTTTGTTTATCACTTTATAGAAGTACAAAGTGAAACTTGTACTTATTTGACCCTCCTAAGTCCCCTGGTGACATACAGTAATAGCCGGGCGCACACTGGTTGCATCAACGTTATTTACACggcatttcaatgaaattaccttgagccaacatggaatagacattgaattgacattTATGATTCAGTGGTTAGACCTAGAATGACTTTGCCTGTGTTCAAATGTTTGAAATAAATGTGTTTCTATACCGTCATTATATTAGAAAAACATCATTTTTATTTATATACTGCCATGGCGACAATTACGATGAACATGTGACAACGATCTTTATTTTTGCTAAAGGTTGTTTTACTTTAACGTTCTTCTTTACTTAATATCATCTTGTTGTCTGATTTAATAACCAAATCAGAGTTTGTCAAACTGTATCTGCTTCATGTTAGCCTTTACTCGATGACGCTTTGGTAATGAATATGTGCGTTTTTTAAATCTTTCATATCTTTTAGGATTTCGTTGCAAAACATTCATTAGTAGTAATAGGCAGAGGTGACAACTAAATGAAAAGACTgaggtaaagacagtttcaaGTTCGATATTCGACGGATATTCGcgctttcaaaccacttgagccacagactccaaataagtgtcatgatgttggaaaATTGCGCACAACATTGCACAGGTCTTATTTTCACG

Function

NR:

description
uncharacterized protein C11orf53 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587071.2 True 1769 mRNA 0.45 5 15454266 15470216

Neighbor

gene id symbol gene type direction distance location
LOC110507164 LOC106580932 coding upstream 49322 15380417 ~ 15405079 (+)
LOC110507162 LOC106580931 coding upstream 82100 15359148 ~ 15372166 (+)
LOC110507084 NA coding upstream 209764 15242563 ~ 15244502 (+)
LOC118936438 snx19 coding upstream 211483 15209006 ~ 15242783 (+)
il-18 il-18 coding upstream 266701 15183737 ~ 15187565 (+)
LOC110507176 LOC106580933 coding downstream 12859 15483075 ~ 15487764 (+)
LOC110507160 LOC106580937 coding downstream 102166 15572382 ~ 15604161 (+)
LOC110507625 LOC106580941 coding downstream 274789 15745005 ~ 15768122 (+)
LOC110507626 LOC106612913 coding downstream 305989 15776205 ~ 16131560 (+)
LOC110507263 LOC106580951 coding downstream 663351 16133567 ~ 16135743 (+)
G2056167 NA non-coding upstream 12698 15441349 ~ 15441568 (+)
G2055656 NA non-coding upstream 25952 15428042 ~ 15428314 (+)
G2055632 NA non-coding upstream 79254 15374737 ~ 15375012 (+)
G2056191 NA non-coding downstream 2375 15472591 ~ 15475846 (+)
G2056212 NA non-coding downstream 36926 15507142 ~ 15507763 (+)
G2056223 NA non-coding downstream 58607 15528823 ~ 15529187 (+)
G2056230 NA non-coding downstream 69641 15539857 ~ 15540155 (+)
G2056232 NA non-coding downstream 71445 15541661 ~ 15541890 (+)
LOC110507180 LOC106612536 other upstream 620678 14825520 ~ 14841123 (+)
LOC110507618 LOC107659943 other upstream 1878771 13554250 ~ 13575495 (+)
G2053443 NA other upstream 2475343 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 3014788 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 3316467 12127441 ~ 12137799 (+)
G2056256 NA other downstream 126817 15597033 ~ 15597651 (+)
G2056820 NA other downstream 904050 16374266 ~ 16376043 (+)
LOC110507087 LOC106612902 other downstream 920805 16391021 ~ 16410705 (+)
G2057561 NA other downstream 1742894 17213110 ~ 17219017 (+)

Expression


Co-expression Network