LOC110507175


Basic Information

Item Value
gene id LOC110507175
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 15502712 ~ 15522529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110507175
ATGCCCTGGGAGAAATCGCCGTCCTTAGGGCTGCCTGATGAAAAGCCATAGCAAGGGGTGCGAGTCTGAGACTCAGACGAGGAAACGAGGTTGCTGACGAGGAAACGAGGACTTCATCTCCACAATGCCAAGACAGTGCCCCCTAGAGCGGTTGGGATCACAAACAACAACTTGCCTTCATATGCACGTCTTGGGACTTCCAGGTTTGAAGTGGCTAGTAGCCTATCCAATGACTCCTCCACAGTCAATGATGTCGGCCTCTGTGCAGGTTGGATAGCCCAGCCTGCAGCTACTGCTCTCCAGCCCATTAACCATTGGTCCTACCCAGAGTACCTCCAACAACatgaccccaccaccactacctccaccacctTGCCCCTCCCCACTGACATGTACATGGTGGGCCCATCCTCCAtactcacctacacacacacacctctttttaCCAACTTTGGGGAGAGTGAAAGAACCCTAGCACCTACGTCCACAGCCCTCACGCAAGTGGACCTCCAGGACTCAGTGTTGACTTATATCCCGTGGACCCAGCCGCTAACCACCATCCCTACATCGGGCGTGCAGTTTGCCTTTCACCCTGCCACTCTGGCTGGTCTCAGTTGCTTCCCATGTCCATGACAGTGACCCCTACCATGCCCCAGCAGGACCCCCAGCCCCCGGAGCAGAGTCCTGCTGTGGCTGAAGAGCCCAACCCTCTGGAGAAACTTCTGGAGGACCAGGATCAGGATGACAAATACACATATGTGAACAGTTCCTCAAACTTCTTCCCCAGTGTCtaa
>TU2351810
GGTAAGTGAATTGGAGTATATATTCCCATCATTTATTTGGATAAGTTTAAATCTAAACATTACTATTGGCTACTAGTGCTAACCCAGTATGGTATATCCATAGGGACTTCCAGGTTTGAAGTGGCTAGTAGCCTATCCAATGACTCCTCCACAGTCAATGATGTCGGCCTCTGTGCAGGTTGGATAGCCCAGCCTGCAGCTACTGCTCTCCAGCCCATTAACCATTGGTCCTACCCAGAGTACCTCCAACAACatgaccccaccaccactacctccaccacctTGCCCCTCCCC

Function

NR:

description
LOW QUALITY PROTEIN: POU domain class 2-associating factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110507175 False 794 mRNA 0.48 5 15502712 15522529
TU2351810 True 294 lncRNA 0.48 2 15504613 15504963

Neighbor

gene id symbol gene type direction distance location
LOC118944779 NA coding downstream 15867 15482577 ~ 15486845 (-)
LOC110507161 LOC106580930 coding downstream 144337 15326868 ~ 15358375 (-)
LOC110507168 LOC106612549 coding downstream 299938 15198498 ~ 15202774 (-)
LOC110507178 LOC106580927 coding downstream 306876 15187693 ~ 15195836 (-)
LOC110507165 bco2a coding downstream 327593 15169327 ~ 15175119 (-)
LOC110507169 LOC106580935 coding upstream 31141 15553670 ~ 15558545 (-)
LOC110507155 LOC106580939 coding upstream 81640 15604169 ~ 15714610 (-)
LOC110507085 LOC106580950 coding upstream 245846 15768375 ~ 15769382 (-)
si:dkeyp-97b10.3 LOC106580916 coding upstream 619196 16141725 ~ 16164147 (-)
ift80 ift80 coding upstream 670716 16193245 ~ 16260045 (-)
G2056149 NA non-coding downstream 74404 15427897 ~ 15428308 (-)
G2056141 NA non-coding downstream 92934 15409537 ~ 15409778 (-)
G2056135 NA non-coding downstream 97779 15404616 ~ 15404933 (-)
G2056114 NA non-coding downstream 130377 15371348 ~ 15372335 (-)
G2055985 NA non-coding downstream 323792 15178693 ~ 15178920 (-)
G2056370 NA non-coding upstream 8833 15531362 ~ 15531652 (-)
G2056385 NA non-coding upstream 29878 15552407 ~ 15552610 (-)
G2056341 NA non-coding upstream 51211 15573740 ~ 15576018 (-)
G2056492 NA non-coding upstream 248983 15771512 ~ 15771783 (-)
G2056115 NA other downstream 126197 15376215 ~ 15376515 (-)
LOC110507082 LOC106580920 other downstream 967472 14532256 ~ 14719525 (-)
LOC110507619 LOC106580882 other downstream 1745015 13755242 ~ 13757825 (-)
LOC110507606 LOC106580867 other downstream 1975277 13472445 ~ 13527504 (-)
G2054301 NA other downstream 2030299 13456485 ~ 13472413 (-)
LOC110507646 LOC106612894 other upstream 1473031 16756597 ~ 17064214 (-)
LOC110507661 LOC106581010 other upstream 1941992 17464437 ~ 17481646 (-)
G2058724 NA other upstream 2399813 17922342 ~ 17922752 (-)
LOC110507754 LOC106581192 other upstream 5391585 20913520 ~ 20924130 (-)
LOC110507765 dynll2a other upstream 5747638 21270167 ~ 21273576 (-)
G2056359 NA non-coding upstream 2316 15507279 ~ 15507607 (-)

Expression


Co-expression Network