LOC110507169 (LOC106580935)


Basic Information

Item Value
gene id LOC110507169
gene name LOC106580935
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 15553670 ~ 15558545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587059.2
TCCCGGGTGTGTGACCAAATAGTTCCTCATAAACCGTTGCAGTTATTACAGAAGGCTATAAGACATTCTCTGTGGGAGACATATTATTTACTAACAAGACATTAGCTCGGAAATATTATCCATAAAAATACCATGATGCAGAAGTGAATTACGTTATTGCAACAGAAGTGTGGGTGTAGAAATGAGTTCCAGAAGAAGTAGCGGATCCCAAAACTTTCTGTTTGCAACTCGTCTTCATAACAGTCCATGTGAAGTCATTGTGTTCTTAGGAAGACATGGCTTATTAAATTGACCCCACTGTCACTCTAGTCGTTGTGCTCTGCATTTGCAACGCAATTCCAAAAAACTATCCAGTAATAATGGGGTCTTCAAGTGTTCCCACCACTCTGCCCATAGTGACGCTTCTCTCAAACCCTCGCACACTTAGTGCATTTCACCGTTTGGACCTAAATAAAAGACACGATGGCTGCATCGATCCTTCGCAGGAAAATTCCTCTTGTTTGCATGGTCGACCTCATTATTCCCTCTCTCCAACAAGCTAACGACAGCCAATCCTGGGGAAGGAAGGGGGCGGAGTTATTGGAGAGACCGCACATAATTGGTGATGGTCAGACGGACTGGATGACGGAAAAAGTTGATTTGTCTTCGTTCCAGTCGACTACTGAATCCTCTTCTAGCTCATCTTCTCCGCCCTCACCGTTGGAACATGATGTCAAGGTGCCCTCTGACTTGGAGGTCATGACCTCTCTTTTGCAAGAGGAGCTTGCTCAGCTTGAGGATTACTTCCGGTCTGAATCGACTTCAACCAAATTGGACAAATCACCAAAATGTGACAAAGGCGCCCAAGCAATGGGTGCCCATTCTTACTACCAGTTGCCCTATGCTTCGTACAGTGGCAACCAATCAGAAACAAGCCCACTGGTTGTTACCCTGGCAACAGGGGAACTCGACCGGGTGAGCTTCTGTGGTGGTCCCGTTGGAAGATCCAAAATGGCGAGACCAGCCCCATACAACTATCATCATCGTTCATACAATAATTGCCGAAGAATAGTTTCAGATGGTGTCAACAAAGTTGGAGAGGAACTTGAGCATGACACCTGGAGTGCCAAAGGAAGTTACTCAGGAAGCACAGAGGTGGCTGTTAACCACTGTTCTACATTGAAAACCGTGGGGAAGAGCATTAGCAGTGTTAAGAAAGTCAGAGAATGTGGTGTATCGTTGAAGGAAGAGGAAAGTTATTGTTTTACAGAGGACGTGTTTTGCAGTGAAGAGATGACCAGAGGTTTTTGTATGGCTGGGTCCTTCGATACCCACCCCAAGAGAGAAGGACAGTTGATGCATGGTATGAAGGTTAGTGGTTATGATGGTATGGGGCTGGAGGTCTTGCATTGCAACAAAGATGGTGGACTCTCTGGAACTATTCCTCAAGAGCCAGAGGCAAACGATggctattaccaccaccacccgAACGTTGCTCATACAGAGCCTTATCATAGCTTTATCGGTGAAATCCAAGAGCCTACACAAGTACATGGTATAGAGCCCCAGCATGGCCACTACCTCTTCCCAGAATGCATCGGAGACCAAAGCTACGAATGTCTGtcaagaggagagagcgaggggccAATGGTGGACTCGCCCATTCACAGGCAAGCAGTACAGAGGCTAAAGGAAGATCCATGCCCCCTGAGCTGCCTCAAACCAGGccttgtctctgtccctctggaaGTACATACCGGAGAACGGAAGCAGaagaagagagaccagaacaaAACAGCTGCTCACAGGTATCGACTGCGTAAGAGGGCGGAGCTGGACATACTGGAGGAGGAGCTTCATGGGCTGGAGGGACAGAACCGGGAGCTCCAGGACAAGGCGGAGTCAGTGGAACGAGAGATTCAATATGTCAAAGATTTACTCATCGAGGTCTACAAAGCCCGTAGTCAACGCCTAAAGCAAGATGCCAGTGCCTAATCTCCCACCCACAACACCAGCACTCGCATCAAGAGCACTTGTTTGTTCAAAATGATAGTTGCATGATTTTGGTAGTTTTTCTAAAAAATATAATCGCTTTATTATTGTTACAGACAATATGCCACACAATGTATCTTTCCAAATGTTTCCCTGAATGACTTCAGGGCTTAGTTGGTGAATTTAGGAGGAAACTATAAACTGTCCGTGACCACTGTGACACTGACCTGCACTCACAGCCTTGTAATGTTGGAGTTTGAGCTTGCAAAGATTGACctttttacagtcattttttaACCGTAATAGAAACGATTGAATTATGCCTGTTTTTATTGACAGTCAATGTCAGCATAAAGGAAGGATGTTTCATGCTGTGatgatgtatgttttgttttatttattcatcacCTTTTGCTTTGTCCACTCATTTGGTATAAGGGATTGAAGAAGGAATGTTTAAAATGCTGTGGAAAAGTTCATAAATGCTGCAAACTACTAGAACATTTTATTGCTAAAAGGCTGATGTAGAACATGTAGGAAACCACCTAGACCTTGCTAAAGTACCCAATGCATGTTTGATTGTTAAAAAAGCATGATTGCTTGTTATTTGAAAATGACTATTCTTTTAACTGCATGGCTTCCTGATTTAATGGTTTCCATAGAGCATTTTCCCAAGTCATGCTTTAACTGTTTAAGTTTCATTAGCTGAAGTTCTACAGAGCTTTACtctaaactatttattttatactCAGGATGTTTGTCCACTTTTACATAATGAGGAAAATTGACATGGCTATCACTGTTTTATCATCTTGCTTTTTTCTTGGCTGTATTTTGCGAAAAAACAATCACCTGTTGACACAACAATAAATTGTTGCTGGGCATAATGTCTTCATGATAATCTTAGTGAATGAATATGTGTTGAATTCAGGTCTACTTGTTTGATAGATGACTATATCAGGTAACTATCAGGTAAATTGCAGTCAAATAAACCAGTTATGTTTGATCATTTA

Function

NR:

description
uncharacterized protein LOC110507169 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09044 ATF5; activating transcription factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587059.2 True 2984 mRNA 0.43 5 15553670 15558545

Neighbor

gene id symbol gene type direction distance location
LOC110507175 NA coding downstream 31141 15502712 ~ 15522529 (-)
LOC118944779 NA coding downstream 66825 15482577 ~ 15486845 (-)
LOC110507161 LOC106580930 coding downstream 195295 15326868 ~ 15358375 (-)
LOC110507168 LOC106612549 coding downstream 350896 15198498 ~ 15202774 (-)
LOC110507178 LOC106580927 coding downstream 357834 15187693 ~ 15195836 (-)
LOC110507155 LOC106580939 coding upstream 45624 15604169 ~ 15714610 (-)
LOC110507085 LOC106580950 coding upstream 209830 15768375 ~ 15769382 (-)
si:dkeyp-97b10.3 LOC106580916 coding upstream 583180 16141725 ~ 16164147 (-)
ift80 ift80 coding upstream 634700 16193245 ~ 16260045 (-)
trim59 LOC106580965 coding upstream 725154 16283699 ~ 16289035 (-)
G2056385 NA non-coding downstream 1060 15552407 ~ 15552610 (-)
G2056370 NA non-coding downstream 22018 15531362 ~ 15531652 (-)
G2056359 NA non-coding downstream 46063 15507279 ~ 15507607 (-)
G2056149 NA non-coding downstream 125362 15427897 ~ 15428308 (-)
G2056341 NA non-coding upstream 15195 15573740 ~ 15576018 (-)
G2056492 NA non-coding upstream 212967 15771512 ~ 15771783 (-)
G2056835 NA non-coding upstream 222465 15781010 ~ 15781209 (-)
G2056841 NA non-coding upstream 234768 15793313 ~ 15793990 (-)
G2056115 NA other downstream 177155 15376215 ~ 15376515 (-)
LOC110507082 LOC106580920 other downstream 1018430 14532256 ~ 14719525 (-)
LOC110507619 LOC106580882 other downstream 1795973 13755242 ~ 13757825 (-)
LOC110507606 LOC106580867 other downstream 2026235 13472445 ~ 13527504 (-)
G2054301 NA other downstream 2081257 13456485 ~ 13472413 (-)
LOC110507646 LOC106612894 other upstream 1437015 16756597 ~ 17064214 (-)
LOC110507661 LOC106581010 other upstream 1905976 17464437 ~ 17481646 (-)
G2058724 NA other upstream 2363797 17922342 ~ 17922752 (-)
LOC110507754 LOC106581192 other upstream 5355569 20913520 ~ 20924130 (-)
LOC110507765 dynll2a other upstream 5711622 21270167 ~ 21273576 (-)

Expression


Co-expression Network