LOC110507085 (LOC106580950)


Basic Information

Item Value
gene id LOC110507085
gene name LOC106580950
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 15768375 ~ 15769382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586958.1
ATGAATGGGAACAATAACTTCACCTTGTGTCCGATCTCGGACTCTTATAAAAGGATCCTGCTCCCACTGACCTACAGCCTGGTGTTTGTTCTGGGTCTGACCCTAAATGGAGCACTGCTGTGGGTGATGTGCTTCCGGACCCGGACCTGGAGCTGCTCTGTCATCTACCTGACCAACCTGGccgtggctgacctgctgtacgtGCTGTCCTTGCCACTGCTCATTGTCAGCTATGCCATGGATGACGTATGGCCCTTCGGTGACATAATCTGCAAAGTCGTCAGATTCTTCTTCTGTACGAACCTCCACTGCAGCATGATGTTCCTCATGTGCATCAGCGTGCACCGGTTCCTCGGTGTGTGCTACCCGATTACTGCACTCCGGTTCAGGACCAAAAACCTGGCTGTTTTGATGTCTGGCTCGGTTTGGGTCCTGGTGATGCTGGAGATATCACCAACTCTTTTATTTGCCCACACCGGGTTCATCAACAACATGACGGTGTGCTATGAAATGACCAACCCTGGCCAGTTGTATACTTACCTTCCTTACGACATGTTTCTGGACGTGGTTGGATTTATGGTACCTTTCATGATTATTATAATCTGTTACTGCTCAATGATGAGAGTGCTCTACCGGGCTGGAAGGGACAACtcacaggtagggacagagaatCTAAACAAGTCCATACGCACCATTCTGGCGGTGTGCTTGATGTTCGTGCTGTGTTTTGTGCCTTATCACATTGCGCGGATAGTGTGCCTGTTCATACGCGTCTATGTGTCCAGTGACTGTAGAGTCATCAACTTGGTGATGATCGGCTATAAGATATGGAAACCCCTGGTCAGCTTCAACAGCTGCGCAAACCCACTGCTGTACTTCCTGGGTTCAGACAGGCAACGGAAGCAGCTCTGGGCCCAGTTATTTAGGAGTAAGATGGTCCATCCCTTGGTGTGCACAGTACAGCCAGATATAGTACCCACCGTGTCTGGTACTGCCAGAAATCAGTGA

Function

NR:

description
P2Y purinoceptor 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586958.1 True 1008 mRNA 0.50 1 15768375 15769382

Neighbor

gene id symbol gene type direction distance location
LOC110507155 LOC106580939 coding downstream 53765 15604169 ~ 15714610 (-)
LOC110507169 LOC106580935 coding downstream 209830 15553670 ~ 15558545 (-)
LOC110507175 NA coding downstream 245846 15502712 ~ 15522529 (-)
LOC118944779 NA coding downstream 281530 15482577 ~ 15486845 (-)
LOC110507161 LOC106580930 coding downstream 410000 15326868 ~ 15358375 (-)
si:dkeyp-97b10.3 LOC106580916 coding upstream 372343 16141725 ~ 16164147 (-)
ift80 ift80 coding upstream 423863 16193245 ~ 16260045 (-)
trim59 LOC106580965 coding upstream 514317 16283699 ~ 16289035 (-)
LOC110507632 LOC106580964 coding upstream 520050 16289432 ~ 16303061 (-)
LOC110507633 LOC106580971 coding upstream 534704 16304086 ~ 16305367 (-)
G2056341 NA non-coding downstream 192357 15573740 ~ 15576018 (-)
G2056385 NA non-coding downstream 215765 15552407 ~ 15552610 (-)
G2056370 NA non-coding downstream 236723 15531362 ~ 15531652 (-)
G2056359 NA non-coding downstream 260768 15507279 ~ 15507607 (-)
G2056492 NA non-coding upstream 2130 15771512 ~ 15771783 (-)
G2056835 NA non-coding upstream 11628 15781010 ~ 15781209 (-)
G2056841 NA non-coding upstream 23931 15793313 ~ 15793990 (-)
G2056847 NA non-coding upstream 37040 15806422 ~ 15806644 (-)
G2056858 NA non-coding upstream 50816 15820198 ~ 15820410 (-)
G2056115 NA other downstream 391860 15376215 ~ 15376515 (-)
LOC110507082 LOC106580920 other downstream 1233135 14532256 ~ 14719525 (-)
LOC110507619 LOC106580882 other downstream 2010678 13755242 ~ 13757825 (-)
LOC110507606 LOC106580867 other downstream 2240940 13472445 ~ 13527504 (-)
G2054301 NA other downstream 2295962 13456485 ~ 13472413 (-)
LOC110507646 LOC106612894 other upstream 1226178 16756597 ~ 17064214 (-)
LOC110507661 LOC106581010 other upstream 1695139 17464437 ~ 17481646 (-)
G2058724 NA other upstream 2152960 17922342 ~ 17922752 (-)
LOC110507754 LOC106581192 other upstream 5144732 20913520 ~ 20924130 (-)
LOC110507765 dynll2a other upstream 5500785 21270167 ~ 21273576 (-)

Expression


Co-expression Network