ift80 (ift80)


Basic Information

Item Value
gene id ift80
gene name ift80
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 16193245 ~ 16260045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965871.1
CGCTTGTTTGACTAGAGAGTGAGTGCCTAGTACCTATTTTCTGAAGACTTCACATTAGCCACCACAATGAGATTAAAGACATCATTACTCAAGGAACCAAAACATAAAGAGCTTGTGAGCTGTGTGGGCTGGACCACTGCAGATGAACTGTACTCATGCAGTGAGGACCACCAGATCCTGAGATGGAACCTGCTGACCAGTGAGACCAGCCTGGTGGTGAAGCTGCAGGAGGACCTCTTCCCCATCGACCTGCACTGGTTCCCCAAGACGGTGGGAGGCAAGAAGCAGGCCCAGGCTGAGATCTTTGTGCTCACCAGCACTGATGGCAAGTTCCACCTGGCCTCTAAGATGGGCCGTATTGAGAAGAGTGTGGAGGCCCACAAAGGAGCTGTATTAGCCGGGAGATGGAACTACGACGGGACCGCTCTCATCACAGCTGGGGAGGACGGACAGATCAAGATCTGGTCTAAGAGTGGCATGCTGAGGTCTACCTTGGCCCAGCAAGggtCTCCTGTGTACTCGGTGGCCTGGGGCCCGGACTCTGATAGGATCCTGTACACGTCAGGCAGACTGCTGATAATCAAGCCCCTGCAACCTAGTGCCAAGCTCCTACAgtGGAAGGCCCATGATGGGATCATTCTGAAGGTGGACTGGAACTCTGTGAATGACCTGATACTGTCAAGTGGAGAGGACTGTAAATACAAGgTGTGGGACAGCTATGGTCGTCTGCTATACACGTCCTCGTCCCATGACTACCCTGTGACCTCGGTGTCCTGGTCTCCGGATGGGGAGGTGTTCGCCGTGGGCTCCTTCAACACCCTGCGCCTCTGTGACAAGACCGGGtggtcgTATGCGTTGGAGAAGCCTAACACTGGCAGTGTGTTCAGCCTGGCCTGGTCGGCAGACGGGACACAACTCGCGGGGGCTTGTGGGAACGGACACGTCATCTTCGCCCACGTGGTGGAGCAGCGCTGGGAGTGGAGGAGCTTCGAGATCACCCTCACCAAGAGGAGGACCATGCAGGTGAGGAACGTGGTGAATGATGCGGGGGATGTCCTGGAGTTCAGGGACCGGGTCATCAAAGCCTCTCTGGCCCATGGTCACCTAGTGGTCACCACCTCTCTCCAGTGCTATGTCTACAGTGCTACGAACTGGAACACCCCTCTCATCTTTGACCTGAAGGAGGGGACTGTCAGCCTCATTGTACAGGCTGAGAAACACTTCCTGTTGGTGGATGGGACGGGGGTGTATGTGTTCTCCTACGAGGGCCGTCTCATCTCCACGCCCAGATTCCCCGGCATGAGAACAGACATCCTCAACGCCCAGTCCGTTTCCCTTAGCAACGACACCATCGCCATCCGGGACAAGAGCGATGAGAAGGTCATCTTTCTGTTTGATGCCCTGACGGGGAAAGCCCTGGGTGACGGGAAGCCCCTGACTCACAAGATGGAGGTGGTGGAGATAGCTCTGGACCAGTGTGGCCCGTCCAGCGATAGGAAGATTGCGGTCATAGACAAGAACCGTGACCTGTATCTGACCGCTGTCCATCGCCTCTACAGAGAACACAACATCTGCAAGATAGGCACTATGGTCCACACTATGGCCTGGAACGACTCTGCTAACATCCTGTGTGGTATTCAGGACACACAGTTCACCGTGTGGCACTATCCCAGTGCTGTCTTCACTGACAAGGACCTGCTGCCTAAAACACTCTACATGAAGGACGCCAGTGAGTTCAGCCGTGCGCCCCACATCCTGAACTACGTGGGGACCCAGGTGACGGTGCGTCGCTGTGACGGCTCGTTGGTGTACAGCAGCGTGTCTCCCTACCCTGCCCTGCTGCACGAGTACAGCGCCTCCTCTCGCTGGGAGGACGCACTGCGCCTCTGCCGCTTTGCCAAGGACCAGTCACTGTGGGCGTGTCTCGCTGGCATGGCAATGGCCAATAGGGAGTTGACGACAGCAGAGGTGGCCTACGCTGCCATTGGAGAGGTGGATAAGGTGCAGTATATTAACTCTATCAAGGATCTGCCATCTAAGGAATCTTCAGTGGCCCACATGTTACTGTTCAGTGGTCATGTCCAGGAGGCTGAGGCCACTCTGCTACAGGCTGGCCTGGTCTACCAAACCATACAGGTCCACATCAACCTCTACAACTGGGACAGGGCGTTGGAGCTGGCAGTAAAACATAAGACCCATGTGGACACAGTGCTGGCCTACAGACTCAAGTTCCTGCAGGACTTTAGCAAGAAAGAGACCAACAAGAGGTTCATGCAGTACGCTGACGGGgtgGAGGTGGACTGGGAGAAGATCCAGGCAAAGGTAGAGATGGAGctggttaaggagagagagaaggctgcCACCACCTCTGTCAGGAGCAGCCTGGCCTCCCGACGCTGAGCCTCAACCCTACACCTCTGACTTCATCCAGGGACCAATTGTACATAATATTTTCAAATGGTCATTTATCAAACATGGTTAGTGttatttttgtgtttgtttttttttatattgatATTTCTTTTCTTCAATGAACTTATTCTCTTTTCTTACATGCCTTATTCTCTGAGAATGTACATATGTGGATGTttaataaatacatatttatcA
>XM_021587742.2
GTCAGCGAAATTAGAAAATGAGTATCTCTGCCTACGTTTCAGACCATTGCTTGCTAGCTGCATAGCTATCAGTCTATTTTTCTGGTTTTGTCGATTAGTATAATTGTTGAGGAATATATAACCTTATATGTATTAACTATTAGCGGTGGAGCTACTATGGCAACTGGACATGATTAGTTGTCTGCTATCAATTGTAATAACGGTGAAGACTCAGCACGTTAGCTACAGTGAAGTGAGTGCCTAGTACCTATTTTCTGAAGACTTCACATTAGCCACCACAATGAGATTAAAGACATCATTACTCAAGGAACCAAAACATAAAGAGCTTGTGAGCTGTGTGGGCTGGACCACTGCAGATGAACTGTACTCATGCAGTGAGGACCACCAGATCCTGAGATGGAACCTGCTGACCAGTGAGACCAGCCTGGTGGTGAAGCTGCAGGAGGACCTCTTCCCCATCGACCTGCACTGGTTCCCCAAGACGGTGGGAGGCAAGAAGCAGGCCCAGGCTGAGATCTTTGTGCTCACCAGCACTGATGGCAAGTTCCACCTGGCCTCTAAGATGGGCCGTATTGAGAAGAGTGTGGAGGCCCACAAAGGAGCTGTATTAGCCGGGAGATGGAACTACGACGGGACCGCTCTCATCACAGCTGGGGAGGACGGACAGATCAAGATCTGGTCTAAGAGTGGCATGCTGAGGTCTACCTTGGCCCAGCAAGggtCTCCTGTGTACTCGGTGGCCTGGGGCCCGGACTCTGATAGGATCCTGTACACGTCAGGCAGACTGCTGATAATCAAGCCCCTGCAACCTAGTGCCAAGCTCCTACAgtGGAAGGCCCATGATGGGATCATTCTGAAGGTGGACTGGAACTCTGTGAATGACCTGATACTGTCAAGTGGAGAGGACTGTAAATACAAGgTGTGGGACAGCTATGGTCGTCTGCTATACACGTCCTCGTCCCATGACTACCCTGTGACCTCGGTGTCCTGGTCTCCGGATGGGGAGGTGTTCGCCGTGGGCTCCTTCAACACCCTGCGCCTCTGTGACAAGACCGGGtggtcgTATGCGTTGGAGAAGCCTAACACTGGCAGTGTGTTCAGCCTGGCCTGGTCGGCAGACGGGACACAACTCGCGGGGGCTTGTGGGAACGGACACGTCATCTTCGCCCACGTGGTGGAGCAGCGCTGGGAGTGGAGGAGCTTCGAGATCACCCTCACCAAGAGGAGGACCATGCAGGTGAGGAACGTGGTGAATGATGCGGGGGATGTCCTGGAGTTCAGGGACCGGGTCATCAAAGCCTCTCTGGCCCATGGTCACCTAGTGGTCACCACCTCTCTCCAGTGCTATGTCTACAGTGCTACGAACTGGAACACCCCTCTCATCTTTGACCTGAAGGAGGGGACTGTCAGCCTCATTGTACAGGCTGAGAAACACTTCCTGTTGGTGGATGGGACGGGGGTGTATGTGTTCTCCTACGAGGGCCGTCTCATCTCCACGCCCAGATTCCCCGGCATGAGAACAGACATCCTCAACGCCCAGTCCGTTTCCCTTAGCAACGACACCATCGCCATCCGGGACAAGAGCGATGAGAAGGTCATCTTTCTGTTTGATGCCCTGACGGGGAAAGCCCTGGGTGACGGGAAGCCCCTGACTCACAAGATGGAGGTGGTGGAGATAGCTCTGGACCAGTGTGGCCCGTCCAGCGATAGGAAGATTGCGGTCATAGACAAGAACCGTGACCTGTATCTGACCGCTGTCCATCGCCTCTACAGAGAACACAACATCTGCAAGATAGGCACTATGGTCCACACTATGGCCTGGAACGACTCTGCTAACATCCTGTGTGGTATTCAGGACACACAGTTCACCGTGTGGCACTATCCCAGTGCTGTCTTCACTGACAAGGACCTGCTGCCTAAAACACTCTACATGAAGGACGCCAGTGAGTTCAGCCGTGCGCCCCACATCCTGAACTACGTGGGGACCCAGGTGACGGTGCGTCGCTGTGACGGCTCGTTGGTGTACAGCAGCGTGTCTCCCTACCCTGCCCTGCTGCACGAGTACAGCGCCTCCTCTCGCTGGGAGGACGCACTGCGCCTCTGCCGCTTTGCCAAGGACCAGTCACTGTGGGCGTGTCTCGCTGGCATGGCAATGGCCAATAGGGAGTTGACGACAGCAGAGGTGGCCTACGCTGCCATTGGAGAGGTGGATAAGGTGCAGTATATTAACTCTATCAAGGATCTGCCATCTAAGGAATCTTCAGTGGCCCACATGTTACTGTTCAGTGGTCATGTCCAGGAGGCTGAGGCCACTCTGCTACAGGCTGGCCTGGTCTACCAAACCATACAGGTCCACATCAACCTCTACAACTGGGACAGGGCGTTGGAGCTGGCAGTAAAACATAAGACCCATGTGGACACAGTGCTGGCCTACAGACTCAAGTTCCTGCAGGACTTTAGCAAGAAAGAGACCAACAAGAGGTTCATGCAGTACGCTGACGGGgtgGAGGTGGACTGGGAGAAGATCCAGGCAAAGGTAGAGATGGAGctggttaaggagagagagaaggctgcCACCACCTCTGTCAGGAGCAGCCTGGCCTCCCGACGCTGAGCCTCAACCCTACACCTCTGACTTCATCCAGGGACCAATTGTACATAATATTTTCAAATGGTCATTTATCAAACATGGTTAGTGttatttttgtgtttgtttttttttatattgatATTTCTTTTCTTCAATGAACTTATTCTCTTTTCTTACATGCCTTATTCTCTGAGAATGTACATATGTGGATGTttaataaatacatatttatcA
>XM_036965870.1
TCAAGTTAACATTGTGAAGAATAAGTTATATTTTGGTAATGATTTGGGATATTTTCATAAAATAATTTTTGAAAATAGAACGCGCAGTGACGTTTGGGCACTGTTGCCTAGTAACGACGGAAGGGTGTTGTTTACGTGAGTGCCTAGTACCTATTTTCTGAAGACTTCACATTAGCCACCACAATGAGATTAAAGACATCATTACTCAAGGAACCAAAACATAAAGAGCTTGTGAGCTGTGTGGGCTGGACCACTGCAGATGAACTGTACTCATGCAGTGAGGACCACCAGATCCTGAGATGGAACCTGCTGACCAGTGAGACCAGCCTGGTGGTGAAGCTGCAGGAGGACCTCTTCCCCATCGACCTGCACTGGTTCCCCAAGACGGTGGGAGGCAAGAAGCAGGCCCAGGCTGAGATCTTTGTGCTCACCAGCACTGATGGCAAGTTCCACCTGGCCTCTAAGATGGGCCGTATTGAGAAGAGTGTGGAGGCCCACAAAGGAGCTGTATTAGCCGGGAGATGGAACTACGACGGGACCGCTCTCATCACAGCTGGGGAGGACGGACAGATCAAGATCTGGTCTAAGAGTGGCATGCTGAGGTCTACCTTGGCCCAGCAAGggtCTCCTGTGTACTCGGTGGCCTGGGGCCCGGACTCTGATAGGATCCTGTACACGTCAGGCAGACTGCTGATAATCAAGCCCCTGCAACCTAGTGCCAAGCTCCTACAgtGGAAGGCCCATGATGGGATCATTCTGAAGGTGGACTGGAACTCTGTGAATGACCTGATACTGTCAAGTGGAGAGGACTGTAAATACAAGgTGTGGGACAGCTATGGTCGTCTGCTATACACGTCCTCGTCCCATGACTACCCTGTGACCTCGGTGTCCTGGTCTCCGGATGGGGAGGTGTTCGCCGTGGGCTCCTTCAACACCCTGCGCCTCTGTGACAAGACCGGGtggtcgTATGCGTTGGAGAAGCCTAACACTGGCAGTGTGTTCAGCCTGGCCTGGTCGGCAGACGGGACACAACTCGCGGGGGCTTGTGGGAACGGACACGTCATCTTCGCCCACGTGGTGGAGCAGCGCTGGGAGTGGAGGAGCTTCGAGATCACCCTCACCAAGAGGAGGACCATGCAGGTGAGGAACGTGGTGAATGATGCGGGGGATGTCCTGGAGTTCAGGGACCGGGTCATCAAAGCCTCTCTGGCCCATGGTCACCTAGTGGTCACCACCTCTCTCCAGTGCTATGTCTACAGTGCTACGAACTGGAACACCCCTCTCATCTTTGACCTGAAGGAGGGGACTGTCAGCCTCATTGTACAGGCTGAGAAACACTTCCTGTTGGTGGATGGGACGGGGGTGTATGTGTTCTCCTACGAGGGCCGTCTCATCTCCACGCCCAGATTCCCCGGCATGAGAACAGACATCCTCAACGCCCAGTCCGTTTCCCTTAGCAACGACACCATCGCCATCCGGGACAAGAGCGATGAGAAGGTCATCTTTCTGTTTGATGCCCTGACGGGGAAAGCCCTGGGTGACGGGAAGCCCCTGACTCACAAGATGGAGGTGGTGGAGATAGCTCTGGACCAGTGTGGCCCGTCCAGCGATAGGAAGATTGCGGTCATAGACAAGAACCGTGACCTGTATCTGACCGCTGTCCATCGCCTCTACAGAGAACACAACATCTGCAAGATAGGCACTATGGTCCACACTATGGCCTGGAACGACTCTGCTAACATCCTGTGTGGTATTCAGGACACACAGTTCACCGTGTGGCACTATCCCAGTGCTGTCTTCACTGACAAGGACCTGCTGCCTAAAACACTCTACATGAAGGACGCCAGTGAGTTCAGCCGTGCGCCCCACATCCTGAACTACGTGGGGACCCAGGTGACGGTGCGTCGCTGTGACGGCTCGTTGGTGTACAGCAGCGTGTCTCCCTACCCTGCCCTGCTGCACGAGTACAGCGCCTCCTCTCGCTGGGAGGACGCACTGCGCCTCTGCCGCTTTGCCAAGGACCAGTCACTGTGGGCGTGTCTCGCTGGCATGGCAATGGCCAATAGGGAGTTGACGACAGCAGAGGTGGCCTACGCTGCCATTGGAGAGGTGGATAAGGTGCAGTATATTAACTCTATCAAGGATCTGCCATCTAAGGAATCTTCAGTGGCCCACATGTTACTGTTCAGTGGTCATGTCCAGGAGGCTGAGGCCACTCTGCTACAGGCTGGCCTGGTCTACCAAACCATACAGGTCCACATCAACCTCTACAACTGGGACAGGGCGTTGGAGCTGGCAGTAAAACATAAGACCCATGTGGACACAGTGCTGGCCTACAGACTCAAGTTCCTGCAGGACTTTAGCAAGAAAGAGACCAACAAGAGGTTCATGCAGTACGCTGACGGGgtgGAGGTGGACTGGGAGAAGATCCAGGCAAAGGTAGAGATGGAGctggttaaggagagagagaaggctgcCACCACCTCTGTCAGGAGCAGCCTGGCCTCCCGACGCTGAGCCTCAACCCTACACCTCTGACTTCATCCAGGGACCAATTGTACATAATATTTTCAAATGGTCATTTATCAAACATGGTTAGTGttatttttgtgtttgtttttttttatattgatATTTCTTTTCTTCAATGAACTTATTCTCTTTTCTTACATGCCTTATTCTCTGAGAATGTACATATGTGGATGTttaataaatacatatttatcA

Function

symbol description
ift80 Acts upstream of or within several processes, including cilium assembly; convergent extension; and retina morphogenesis in camera-type eye. Predicted to be located in motile cilium. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Is expressed in several structures, including eye; notochord; pectoral fin; pectoral fin bud; and pronephric duct. Used to study asphyxiating thoracic dystrophy; asphyxiating thoracic dystrophy 2; and ciliopathy. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 2. Orthologous to human IFT80 (intraflagellar transport 80).

NR:

description
intraflagellar transport protein 80 homolog

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0060026 convergent extension biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0008104 protein localization biological_process

KEGG:

id description
K19678 IFT80; intraflagellar transport protein 80

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965871.1 False 2610 mRNA 0.54 19 16193245 16258675
XM_021587742.2 False 2824 mRNA 0.52 19 16193245 16258927
XM_036965870.1 True 2727 mRNA 0.53 19 16193245 16260045

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-97b10.3 LOC106580916 coding downstream 29098 16141725 ~ 16164147 (-)
LOC110507085 LOC106580950 coding downstream 423863 15768375 ~ 15769382 (-)
LOC110507155 LOC106580939 coding downstream 478635 15604169 ~ 15714610 (-)
LOC110507169 LOC106580935 coding downstream 634700 15553670 ~ 15558545 (-)
LOC110507175 NA coding downstream 670716 15502712 ~ 15522529 (-)
trim59 LOC106580965 coding upstream 23654 16283699 ~ 16289035 (-)
LOC110507632 LOC106580964 coding upstream 29387 16289432 ~ 16303061 (-)
LOC110507633 LOC106580971 coding upstream 44041 16304086 ~ 16305367 (-)
LOC110507635 LOC106580962 coding upstream 54246 16314291 ~ 16354923 (-)
LOC110507636 LOC106580961 coding upstream 130977 16391022 ~ 16394010 (-)
G2056989 NA non-coding downstream 56850 16086312 ~ 16136395 (-)
G2056930 NA non-coding downstream 219628 15972993 ~ 15973617 (-)
G2056892 NA non-coding downstream 304805 15887596 ~ 15888440 (-)
G2056885 NA non-coding downstream 323309 15869669 ~ 15869936 (-)
G2057088 NA non-coding upstream 5224 16265269 ~ 16265690 (-)
G2057098 NA non-coding upstream 48577 16308622 ~ 16309147 (-)
G2057082 NA non-coding upstream 50262 16310307 ~ 16311683 (-)
G2057131 NA non-coding upstream 109379 16369424 ~ 16370245 (-)
G2057132 NA non-coding upstream 110978 16371023 ~ 16371237 (-)
G2056115 NA other downstream 816730 15376215 ~ 15376515 (-)
LOC110507082 LOC106580920 other downstream 1658005 14532256 ~ 14719525 (-)
LOC110507619 LOC106580882 other downstream 2435548 13755242 ~ 13757825 (-)
LOC110507606 LOC106580867 other downstream 2665810 13472445 ~ 13527504 (-)
G2054301 NA other downstream 2720832 13456485 ~ 13472413 (-)
LOC110507646 LOC106612894 other upstream 735515 16756597 ~ 17064214 (-)
LOC110507661 LOC106581010 other upstream 1204476 17464437 ~ 17481646 (-)
G2058724 NA other upstream 1662297 17922342 ~ 17922752 (-)
LOC110507754 LOC106581192 other upstream 4654069 20913520 ~ 20924130 (-)
LOC110507765 dynll2a other upstream 5010122 21270167 ~ 21273576 (-)

Expression


Co-expression Network