LOC110507632 (LOC106580964)


Basic Information

Item Value
gene id LOC110507632
gene name LOC106580964
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 16289432 ~ 16303061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587744.2
GAGTGAGCAATAACGGGAATTCCCCGCCCTTCCACCCAGAGCGAGGCTGTCTCTCCACCACCGGCATTCCCAGTATGCACCGCGGACAGACCAACAAAAAATAGTCCGGTAACTGAAAGGCCTGAGAAAAAGAACTCGAAAGGAGTAGCGGCTAGCTGATTCATTTCAAACGGTGTTAAAACATAGCTAAGATTGCTAACATGTCTGACAACGAGAAACTAGACAACCAGCGACTGAAGAATTTCAAGAACAAGGGTCGCGACTTGGAGACGATgagaagacagaggacagaggtggTGGTGGAACTCCGCAAGAACAAAAGGGACGAACACCTGCTGAAGAGGCGAAACGTGCCCCACGAGGACACCTGCGAAGACTCTGATGCCGACGGAGACTTCAGATCGCAAAACACCTCTCTTGAAGCAATAGTACAAAATGCCACAAGTGATAACCAGGGAGTTCAGCTGAGTGCCGTGCAGGCTGCAAGGAAGCTGTTGTCTAGTGACCGTAACCCTCCCATAGATGACCTGATCAAGTCAGGCATTCTCCCCATTCTGGTGCACTGTCTGGACAGAGATGACAAtccatctctacaGTTTGAAGCTGCCTGGGCTTTGACCAACATTGCATCAGGAACCTCAGAGCAGACCCAGGCAGTGGTCCAGTCCAATGCTGTGCCACTGTTCCTGAGGCTGCTGCACTCTCCTCACCAGAATGTGTGTGAGCAGGCGGTCTGGGCCCTGGGAAACATCATAGGCGACGGCCCCCAGTGCAGGGACTATGTGATCAGTCTCGGTGTGGTGAAGCCCCTGCTCTCCTTCATCAGCCCCTCTATCCCCATCACCTTCCTCCGTAACGTCACCTGGGTCATGGTCAACCTCTGCCGCCACAAGGACCCACCGCCACCCATGGAGACCATCCAGGAGaTTCTTCCAGCTCTCTGTGTGCTGATCCACCACACTGATGTTAATATCCTGGTGGACACGGTGTGGGCTCTGTCCTACCTGACAGACGCGGGCAACGAGCAGATTCAGATGGTCATCGACTCAGGCATTGTGCCCAACCTGGTGCCCCTGCTTAGCCACCAGGAGGTCAAAGTCCAGACTGCTGCTCTGCGGGCGGTGGGCAACATAGTGACTGGAACAGATGAACAGACCCAGGTGGTGCTCAACTGTGACGCCCTGGGacacttcccctctctccttacaCACCCCAAGGAGAAGATCAATAAGGAGGCAGTGTGGTTCCTGTCCAACATCACAGCAGGCAACCAGCAGCAGGTGCAGGCTGTCATTGATGCCAACCTGGTACCCATGATCATCCACCTTCTGGACAAGGGAGACTTTGGAACACAGAAAGAAGCAGCCTGGGCCATCAGCAATCTGACAATTAGCGGGAGGAAGGACCAAGTGGCGTACCTGATCCAGCAGCAGGTGATCCCTCCCTTCTGTAACCTGCTGACAGTGAAGGATGCTCAGGTGGTGCAGGTGGTCCTGGACGGCCTCAGCAACATCCTCAAGATGGCTGACGACGAGGCCGAGACCATCGCCAACCTCATCGAGGAGTGTGGAGGTCTGGAGAAGGTGGAGCAGCTCCAGAATCATGAAAATGAAGACATCTATAAACTGGCCTATGAAATTATTGATCAGTTCTTCTCATCTGATGATATTGATGAAGACTCCAGCCTGGTTCCGGAGGCGATCCAGGGGGGAACATACGGCTTCAATTCCTCCACCAACGTGCCAACAGAGGGGTTCCAGTTCTAGAAGGCATCTCGGGAGTCTGGAGTTTTGTTTGCGATGCAGCACTCTGTTCAACATAAAACAAattaggagagaaagagagcgaaagagtgtGAGAGAAATTAGATCCATTGTGCTTGGCTCGTGGGATCCGTGGCTGCATCTTATCTGAGAGAAAATGTGTTGATTTCGTTTGGCATTCCAGGGGAACCAGCCCAAATGAAGTTTGAGATGGCGAGTGGGTGTGAGTGAGTGGCTACATGTTGCAAAAAACAAACATCTACATCGAATGCGTTGAGACACGCCGAGTAACTTCCATGTTATTGGAGCTGTCGACTAAAACGGAAAACTACTACAATGATGACAAAAACGCGATGTCAGCCCGGGGAGAATCAAATACTTCAAAATCAAGACATTGAGGCAACAAACACAAAAGGAAAACCAACAAAACAAGCGTAAGATGAACCATATGACAATTCTGCGGTCCTCCGACCGGAGGGGGCGCCACCTCCTGTGCGCCCATCCCCCAATCGGCCACGCCATCAGACGTGTGTGTGAATGGACCCATTGTGTATGAATGTCTGGACTCAGTGCTGAGGAGCCAGGTTCATCTCCTCCAACCAGAGGCCCTCGATGGGGgcgtcccccccctccccccgcggCGGTGGGCAGGGCTAGAGTCCAGCGGGTGTGTGCAAGAGAATGGACGAGTGCCGTGTGTGCGTGTCTGGAGTGTGCAAGAAGACTGGATGTGAACGcatgcagagagaaacaaaatACATACAACATGAGAGTAACAAAACCGAGAAGAAATTCTGCCTTCTAATGAGGCAGATACAAATCCCTGAAAGGAAGAACTTTGGAAATGAAAAAACATGTAATCACAAgggttttgttttgttgtttttcatttGTATTAATTGACACTGGACAAGGCTAGGTGGAGCAGCGGGTGCATTGTAGTAAGATGCATTTGGTGGCTTTTCTTTTTGCATCCAGTGTGTACAATTTTTATTTTCTGCTTTTACTTTCATTGCTTATGTGAGGTGATTAATAAGGATCATAATTCCACCTCCCCACATTAACCATACCTTTGCACCAGATCTGGGTTTGATGCTGTGAAATTCTGACAACATCATTGTCAACCAAATGACTCGTGTACTCCCCTAGCATGATTTAATGTTTTTTCTTTCTCTTGAAGCAAAAATCACTGCTTTTGCGGTATTGTTGCCATAGCTTTGACTTAACACAAGGGGAAATTAAAAATTGCCATTTTATGTAACTTTGATTCATAACCTTTGCATGTACTAAGCTATAGCACAGTTCATTTGAGGGGTTTTTAGTTTCTTTAGGCTGTACAcagtgtaatttttttttttttgtaaacttTGCTGTTTAAATGTTACCTGTCTCCCCCTACTGACTTAAGTTTCTGATTTTGAAGATAAATCTGAACAGTTTTGCACATGTACTGCAGAGTGAGAGGCCTGAAGTCATTCAAAAGGTGtggttggactcatcagacctgCTAACACCTTCAATATGCATCATCCAACCACAAGCTTTGTTTTATATTTAGTAGTAGCCATAATCAACTCACGTTGAGACATTTTTAGGGAATTTGGAGgaatttttatttacatttttttattaggGGTAATAATTATTCTGCCTGAGGCACCCCTGAATTGGGGAAAGGTAAGTATCGGTGATTGGACCCCCTAGCCTCGACAGGGTGGCTCAATGATAAATGTTGAGCCTTATTCCTTGACCTAAGAGAACTCATGAACAAGTTTGCTGTACCTCCCAACCCCTTGCTCCTGCCCCGTTTTCCATTTAGGTGCCCAATCTTCCCCCATTTTTCTTTGTGTTAATTTTTAAAAAGACTGTAGAAATTGATTGCACTTTGTGGTCATCATAACCTTCTGTTGaacatttagttgtttttttttttcagcatTCCTTGTTAGCAAATATGTggtttcaaaaaaataaaaatgaaatggtGGTTAACCTGTCGAGTTGGATCTACAGGCTAGATTGTCTTCAAGAAAATAAATAGTGAAACCCA

Function

NR:

description
importin subunit alpha-3-like

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K23583 KPNA3_4; importin subunit alpha-4/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587744.2 True 3813 mRNA 0.47 17 16289432 16303061

Neighbor

gene id symbol gene type direction distance location
trim59 LOC106580965 coding downstream 397 16283699 ~ 16289035 (-)
ift80 ift80 coding downstream 29387 16193245 ~ 16260045 (-)
si:dkeyp-97b10.3 LOC106580916 coding downstream 125285 16141725 ~ 16164147 (-)
LOC110507085 LOC106580950 coding downstream 520050 15768375 ~ 15769382 (-)
LOC110507155 LOC106580939 coding downstream 574822 15604169 ~ 15714610 (-)
LOC110507633 LOC106580971 coding upstream 1025 16304086 ~ 16305367 (-)
LOC110507635 LOC106580962 coding upstream 11230 16314291 ~ 16354923 (-)
LOC110507636 LOC106580961 coding upstream 87961 16391022 ~ 16394010 (-)
LOC110507637 LOC106580958 coding upstream 93952 16397013 ~ 16402360 (-)
LOC110507638 LOC106580969 coding upstream 126021 16429082 ~ 16430148 (-)
G2057088 NA non-coding downstream 23742 16265269 ~ 16265690 (-)
G2056989 NA non-coding downstream 153037 16086312 ~ 16136395 (-)
G2056930 NA non-coding downstream 315815 15972993 ~ 15973617 (-)
G2056892 NA non-coding downstream 400992 15887596 ~ 15888440 (-)
G2057098 NA non-coding upstream 5561 16308622 ~ 16309147 (-)
G2057082 NA non-coding upstream 7246 16310307 ~ 16311683 (-)
G2057131 NA non-coding upstream 66363 16369424 ~ 16370245 (-)
G2057132 NA non-coding upstream 67962 16371023 ~ 16371237 (-)
G2057133 NA non-coding upstream 68634 16371695 ~ 16372157 (-)
G2056115 NA other downstream 912917 15376215 ~ 15376515 (-)
LOC110507082 LOC106580920 other downstream 1754192 14532256 ~ 14719525 (-)
LOC110507619 LOC106580882 other downstream 2531735 13755242 ~ 13757825 (-)
LOC110507606 LOC106580867 other downstream 2761997 13472445 ~ 13527504 (-)
G2054301 NA other downstream 2817019 13456485 ~ 13472413 (-)
LOC110507646 LOC106612894 other upstream 692499 16756597 ~ 17064214 (-)
LOC110507661 LOC106581010 other upstream 1161460 17464437 ~ 17481646 (-)
G2058724 NA other upstream 1619281 17922342 ~ 17922752 (-)
LOC110507754 LOC106581192 other upstream 4611053 20913520 ~ 20924130 (-)
LOC110507765 dynll2a other upstream 4967106 21270167 ~ 21273576 (-)

Expression


Co-expression Network