LOC110507095 (LOC106580905)


Basic Information

Item Value
gene id LOC110507095
gene name LOC106580905
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 16516401 ~ 16518130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964632.1
ATGGTCCCGAGAGGAAGAAAATTAACAAAAGCTATGGAGAACTCAACCCAAGTCAAGTTATTTTATCTCTTTGGCTTACAAGAGACATTTAACAACAAATCGGTCTATTTTACCTTGTCTCTTATCACATACCTTCTCATCATCACTGTGAATCTGACTCTGATCATAACAATCATTCAGCAGAAAGGTCTCCATGAGCCCATGTATATCTTTCTGTGTAGTCTATGTGTCAATGGATTGTATGGAACTGCTGGTTTCTACCCCAAGTTCTTACTGGACCTTCAGTCAGATGTTCAGGGGATATCTTATGGTGGATGTTTGACTCAAACCTATGTAATATACACATCTGTCATGTGTGAAATGTCTACTTTAACAGTGATGTCTTACGACAGGTATGTGGCAATATGCAGACCACTACTATATCATACCATTGTGACATCTTTAACTGTTAGAAAGTTACTCTTATTTTCTTGGTGTTATCCTTTATTTATAGGACTCATAGTAGTTAGTTTAACCGTCAGAGTTCCTTTGTGTGGATCTCGCATTGATAAGATCTTCTGTGACATTCCGTCTATACTGAAACATGCATTGACCCTGTTTGACAATCTGCAAGGATGGAATAGTAATGTAAATATTACGCTCAATATGCGTAATGCAATGGCCGTACAATTCCTTGTTATACCACCTGTCTTTAACCCTCTCATATATGGACTTAACCTCCAGCAGATTCGAAGGGCAGTTTTTAGAAAGTGTACTCCACATAAAATCATTGATATGAAATGTTAG

Function

NR:

description
olfactory receptor 1D2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964632.1 True 786 mRNA 0.38 3 16516401 16518130

Neighbor

gene id symbol gene type direction distance location
LOC110507087 LOC106612902 coding upstream 105696 16391021 ~ 16410705 (+)
LOC110507086 LOC106580960 coding upstream 125418 16381295 ~ 16390983 (+)
LOC110507634 nmd3 coding upstream 148045 16355003 ~ 16368356 (+)
trnaa-ugc-189 NA coding upstream 192008 16324318 ~ 16324393 (+)
smc4 LOC106580963 coding upstream 235009 16260169 ~ 16281392 (+)
LOC110507096 LOC106580969 coding downstream 23731 16541861 ~ 16555306 (+)
LOC118944639 LOC106580969 coding downstream 73951 16592081 ~ 16597381 (+)
LOC118944640 LOC106580982 coding downstream 80088 16598218 ~ 16607095 (+)
LOC110507099 NA coding downstream 92286 16610416 ~ 16611157 (+)
LOC110507100 LOC106580955 coding downstream 104412 16622542 ~ 16627352 (+)
G2057174 NA non-coding upstream 48153 16442577 ~ 16468248 (+)
G2056801 NA non-coding upstream 194537 16321206 ~ 16321864 (+)
G2056789 NA non-coding upstream 212364 16303455 ~ 16304037 (+)
G2057302 LOC106612898 non-coding downstream 152948 16671078 ~ 16677588 (+)
G2057304 NA non-coding downstream 171454 16689584 ~ 16690727 (+)
G2057315 NA non-coding downstream 195601 16713731 ~ 16714184 (+)
G2057416 NA non-coding downstream 378269 16896399 ~ 16900472 (+)
G2057476 NA non-coding downstream 477430 16995560 ~ 17001137 (+)
G2056820 NA other upstream 140358 16374266 ~ 16376043 (+)
LOC110507626 LOC106612913 other upstream 439062 15776205 ~ 16131560 (+)
G2056256 NA other upstream 918750 15597033 ~ 15597651 (+)
LOC110507180 LOC106612536 other upstream 1682813 14825520 ~ 14841123 (+)
G2057561 NA other downstream 694980 17213110 ~ 17219017 (+)
G2057788 NA other downstream 1037374 17555504 ~ 17566384 (+)
G2057804 NA other downstream 1065840 17583970 ~ 17585924 (+)
G2057945 NA other downstream 1355671 17873801 ~ 17875832 (+)
G2059435 NA other downstream 2052969 18571099 ~ 18594842 (+)

Expression


Co-expression Network