LOC110507104 (ints4)


Basic Information

Item Value
gene id LOC110507104
gene name ints4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 16677716 ~ 16688420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965679.1
GTTAACTTCGTTGGAAATGGCAGCACATCTCAAAAAGCGAGTTTACGAACAATTATCAGAAGTTGTCCAGCTTCTCCAAGAGGAGGCTCCAGCCAAGAAGCTCCGTCTGACCAAACCAATTAAGTCTGCAGCGCTGCACATTGACCTGTGTAAGGCCCCCAACCCCACTGATATCTTGTAGTACCTGCTGCACTTTGCCCGCAGCTCCGTGGAGGCAGAGAGTGTGGAAGGGGTGGTAAGCATACTGCTGGAACACTACTACAAGGTATGGTGTCTTGGCTTtaatccttccatccctccatcttctccttccgtcctttctcttctctttctatctatccgtcatctctctcccttctcttcctcctggGACACTATTACAAAGTAAAGTAACCCTCCTATCCCTAGCTGCTCTTAGCAATGTGGGTGTATTTACATACACTAGCGTTGCTTTCAGTTGTATTGGGTTGCACAAAAACAGTCAGCGGAAAGACAGAAGTTCAATAAAATATAATGTCAACGTACTGTGCCAACATACTCGCTGCTTACCTtatgtcaaaataaaagtcctgcaCATGCGCCATATGtggacaaaaaataaataacttgtgggggacttttattttgacatgAGAAATGCAGATTAGAAGTGGGTCTTCTACAGACCCACGTTTGGAAAGTCTGTTTAGTAATACAATCTTTTAGATATTTTGTCAAATTCCCCCTGTCATAATGACCAACCTTCCTGCCCACCGGCACAGTAAGTAGAAATGGAATTGTATTTAACTTCTGGCTTCCCGCAAACTGTTTTTGGGCAACCCAATACAATTGAAAGCAACGCTAGTGTATGGAAATAGGCCCGCGTTGCCAAGAGCAgctatcctctcccctccttccatggtccctcctttctcccctcctaCTTTTATCCTTtctgcctctccttcttccaTCCCTTCTTTCCCTCACCTTGCTCCTGTCTCTTGCTCCTGAATCTCTCTCATACCTCTttttcatccctctctcgctcatcctcctctctcgctcATCCCCCTTGCTCATCGATCTCGCTCATCgatctctctcatccctcttgctcatcctcctctctctcagcacctGTCAGACACATATTTCGGCATGAGGAATAAATGCCTGCAACTCCTGAGTTGCCTGGGAAATGTGGACACGCCCCTAAATAAAGACGGACCGGTATTGGTTCCAGCTATGATTGGGGGCGGTGCTTCAGGGGTGTCTGgcgcagtgtgtgtgagagatgcaCAGAGCGTCATCAGTGACTACTTTTCTGACCAGGACCCAAGGGTGTGCACGGCGGCCATCAAAGCCATGGTGTCATCTGCCTATCCCGTCGTCCAATGAGCAAGTCCGCCTGGTCGACGACTCGTTTGGGAAGATCAGTCACGTGGTCTCTGATGGATCCTGGGTAGTCAGGGTGCAGGCCGCCAAAACActggGTAACATGTTGCAAGTCAGTCCTCACTTCCTTGAGCAGACTCTGGACAAGAAACTGATGTCAGACCTCAGGAGGAAACGTACTGCTCATGAGCGGGCCAAGGAGCTCTATGCGTCTCGTGAGTTCTCCTCTGGGATGAAATGGGCTGATGATGCTCCCAAGGAGAAGGTGGACACCTCCGCTGTCAACCTGATCGCCTCGGGGGCCTGCGGAGCCTTTGTACACGGACTGGAGGAGATGTACGAGGTGCGTATTGCTGCTGTGGATGCCTTCTCTGCTCTCGCCCAATCATCTGCCAGCTTTGCTGAGATGTGCCTGGACTTCCTGGTTGACATGTTTAACGATGAGATTGAGGCGGTCAGGCTGCAGTCCATCCACGTCCTCAGACAGATCTCTACTAACACCCTGAGAGAAGACCAGCTGGATACTGCACTGGCTGTACTAGAGGACTCGTCTCGTGACATCAGAGAAGTGCTACATGAGTTGCTGTGTTTCACCAATGTGTCGACTAAAGAGTGTATCCAACTGGCTCTGCTGGAGCTGTTGAAAAATCTCACCAAGTACCCCACTGACCGCAACTCTGCCTGGAaGTGTCTAAAGTTTCTAGGTTGTCGTCATCCTACCCTGGTATTACCGCTGGTTCCAGAGCTGCTCAGTACTCACCCTTACTTCCACACCCCTGAACCAGACATGGACGGCCCTGCctCTATTGCAGTGTTGGTGCTGGTGTTCAACGCAGCTCAGTCTTGTTCCACCATGACAGCTCTGTTCTCAGACCACACATTTAGACATTACACCTGGGACAGCCTCTCTCACCTAGTACCTCCTCTcaggttaccaGGGAGGAAGCAGGCCCCAGGTGGGAGTGGTATAGAAGGTTCCAGGAGTGTGGAGTCTGCTCAGCTGTTCCTCCAACAGAGTCAGAGCAGAGTTAGCACCATACAAAACCTACAGGACCCCGGGGCTCAGGACCTGCTAAACTTTACTATCagagatCTACAGAGACTGGGTGAGCTACAGACAGAGCTGGCAGGGGCTGCTGACTTTTTTGCCACCTACCTCCGCTGCCAACTACTGCTCACCAAGatgctggaggagacgtataaaCTGGTGTTCCTATATAATGGTCTGGAGAACAGACAGGTGGCCACCATACACCATGTCAGACTACAGGCTAAGGCCTTACAGCGAGTTCTGACTGCCCGTACTAGGCGAGGAGTTGAACCTCTCATCAGTGTCTGTGAGAAGTTCCTTCAGGAGGTGGAATCCTTTCAGAGGCTGTTTGTGGTGGAGCTGCCCCACCTCCAGGAAAGTTTTGTGGGGAAGCTGTTGGATGTGAGTCCCAGGCTGtcggcctacaagcctggagaaCTGGTCAAGATTCTTCAGACCACACTGAGACAGAGTGGCTTCTTAAACCTTCAATTTCCTAAACGGGTACAcagaacacatacatacacacacaggtattTGACCCAGGTGTGGTTTGTATTGGTTGGCAGGTCCAGCGTGCATCAGCGACCATCATTGAGCCGACAGGAGAGTCTGACAACCACCTGCGTTTCACCTCTGGCCTGGTGGTGGCGCTAGACATCGACGCTACGCTGGAGCACGTACAAGACCCCCACAACACAAAGTACAGtatccagACGGCCAGTCTCATGTGATTCAGCCTAAACCTGGAGACTTCAGGAGTCCTGGACCACACCGCCACCGCCTCATCACACAGGTCTACTTGTCTCACTGCGCATGGACTGGCGTATCAGATCGAAGTGAGGCTGCTGCTGGCCTACAGCTCATCTTGTCTCTAAGACAGCGTGGAGCGACAGCAGCATTGAAGGCCTCCAGCCAGCAGAGGGTGCCACTGAGGGAACCATTCTCTTCAGCAAACCTGTCAAGGTCTTCATCATGCCCAAACCTGCCTGCCGCTGACAAACACACCTCTTTAAACATCCATCTCCCTTTCCCTATCCTCTTCCTCTAGTCTTTTCTATCTTGTCTGTTGTCTTCTCCCTCTCACACCCCTGACCTGCTTCTCCTCAGCCATTGGTGCAGACTCAAAGCTGGTCCTTCCTTACTGTGTTCATTTTTACAAAACAATATATTTGTTAgtggctggctgactagctgactggccTTTATTCTCAACTAGAATGAGAATGCGTCCCAAATAGgtccctattccatatatagtgtactacttttgactactgtaaagggaatagggtgccatttggaattccGCACGAGACTAAGCCAGAGTATCACTGAGGTCACCTGTCTGATCTATGTGTTGCTATTCCTAGTTGCTATAGTTAAGGACAAACTTtttttgaatgaatgaatgaatgaatgaatgaatgaaaccaGATGGTATGTGGTATGATTTCATCAGCAGGTAGAGTGGAAGACGCCACCCACCTTGGCTCCCTGGCCAACCAGGTTGTTGTATTCTGTGATGGCCTTCACGGTCTGCAGCACCCTCAGTTCCACTCCTCTCTGTCACACAAAGTCCACACTTGAGGAAGGGACCTTTTTAAAGAGAGCGTGTTCAACATTGCAGCTGACTTTAAAAGACAAATTCCACCTGAAAACtatcattttgtttttgtttcattaatccattgttgacatagtctcaacttgattgctgacaagcgAAACAACATTTTTTCAAGATACGTAACATTTCCAAATACATAAATCATTCCCTTCTGATGCAATTTGTATCATATTTTGCTGcggggatgatttctgtattttgaaagttaaatCGAATAAAAACAATTGTATGTcttcacatgcgctgaatacaacaggttacaccttacagtgaaatgcttacaagcccttaaccaacaatgcagttttaagaaaattcccccccccccaaaaaaaaagtaagagatga

Function

symbol description
ints4 Predicted to be involved in snRNA processing. Predicted to be part of integrator complex. Orthologous to human INTS4 (integrator complex subunit 4).

NR:

description
Integrator complex subunit 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965679.1 True 4385 mRNA 0.49 18 16677716 16688420

Neighbor

gene id symbol gene type direction distance location
LOC110507103 LOC106580982 coding upstream 19014 16657763 ~ 16658702 (+)
LOC110507098 LOC106580982 coding upstream 24240 16652538 ~ 16653476 (+)
LOC110507100 LOC106580955 coding upstream 50364 16622542 ~ 16627352 (+)
LOC110507099 NA coding upstream 66559 16610416 ~ 16611157 (+)
LOC118944640 LOC106580982 coding upstream 70621 16598218 ~ 16607095 (+)
LOC110507643 LOC106580974 coding downstream 17388 16705808 ~ 16721477 (+)
LOC110507645 LOC106580976 coding downstream 37825 16726245 ~ 16747680 (+)
LOC110507649 mb211 coding downstream 178041 16866461 ~ 16868814 (+)
trnag-ucc-232 NA coding downstream 518416 17206836 ~ 17206907 (+)
LOC110507653 LOC106580984 coding downstream 531068 17219488 ~ 17227085 (+)
G2057302 LOC106612898 non-coding upstream 128 16671078 ~ 16677588 (+)
G2057174 NA non-coding upstream 209468 16442577 ~ 16468248 (+)
LOC110507087 LOC106612902 non-coding upstream 283370 16391021 ~ 16410705 (+)
LOC110507086 LOC106580960 non-coding upstream 286784 16381295 ~ 16390983 (+)
G2056801 NA non-coding upstream 355852 16321206 ~ 16321864 (+)
G2057304 NA non-coding downstream 1164 16689584 ~ 16690727 (+)
G2057315 NA non-coding downstream 25311 16713731 ~ 16714184 (+)
G2057416 NA non-coding downstream 207979 16896399 ~ 16900472 (+)
G2057476 NA non-coding downstream 307140 16995560 ~ 17001137 (+)
G2057495 NA non-coding downstream 355553 17043973 ~ 17075854 (+)
G2056820 NA other upstream 301673 16374266 ~ 16376043 (+)
LOC110507626 LOC106612913 other upstream 600377 15776205 ~ 16131560 (+)
G2056256 NA other upstream 1080065 15597033 ~ 15597651 (+)
LOC110507180 LOC106612536 other upstream 1844128 14825520 ~ 14841123 (+)
G2057561 NA other downstream 524690 17213110 ~ 17219017 (+)
G2057788 NA other downstream 867084 17555504 ~ 17566384 (+)
G2057804 NA other downstream 895550 17583970 ~ 17585924 (+)
G2057945 NA other downstream 1185381 17873801 ~ 17875832 (+)
G2059435 NA other downstream 1882679 18571099 ~ 18594842 (+)

Expression


Co-expression Network