LOC110507666 (LOC106581002)


Basic Information

Item Value
gene id LOC110507666
gene name LOC106581002
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 17786275 ~ 17814495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965529.1
aaagtagtgcactatgtaaggaatagggtgcaatttgagatCCTGCACCCTGTTCTCTGTGAGCTGCAGCTGCACTCACAAACTGGAACATTACAGACATAGCTGCTTTACAGATAACTTCTACAGTATTTTGTTAAATATTTTGGGGTTGAGACAAGAAAAGAAGACTTTTGTTCCAGTGGCATGATACAGATCAGACGGTAAAGCAGAAAGATGAGGAACACACTGCTTCTGATCATGGCTGCACTGACTGCAGTTAGTGAGCAGAACCCAATatGTCTCATCACTGCTCCCAACATAGTCCACCTGGGAGTAGAGGAGACAGTGACAGTACAGCTCCAGGGAGCTATCAAGCCTACACAGATTACACTATACTTTCTGTACCAAACTGACAATAATAAAGTTCTGTCTGTAAAAAAGCATGTAACTCTCAATGAAGCCAATGGCTATCAGGAGGTGGTGAAAATGAGCGTCGTTCCTAGCCTGTACGAAGAGGCAATCAAAAACATAGGAAAAACAAAGACAATTGTGCCATATATCCAACTGGCCGCAGAGAGTAATGacctcttaaaaaaaaaaaaaacgatcctTTTGTCAACAAAAAAGGGTTATGTCTTCATCCAGACAGACAAACCAATCTACAATCCAGGAGAGAATGTCAATTTCAGGGTCTTCACGTTAGACAACTATCTGCTGCCTGTCGAGGAAAGCATCAATGTCAAGATATTTAACTCCAAAGGCCTGTTGGTGTACAACCAGGCTCTACACTCCAGTAAACTCCTTCAGAGGAACATAATGATCCCTGACGTTGAGACGGCTGGCCATTGGAAGATTGTTGCCACTTTTATCAACCATCCCATGTCCAACTCTTCAGTGGAGTTTGAGGTCAGGGAATATGTTCTTCCTACTTTTGAGGTGACGATAACAGCTTTGAAGCCATATTATTTAGTGACAGAAGAATCCTTTCAATTCAGCGTCTCTGTAAGGTACACCTATGGCAAAGGTGTCAATGGCATAGCTTATGTTAGATTTGGACTAATAGACAGAGAAGGCAAAATAATACATCTACCTGGCCTAGAAAACAAGACTTCTATTCAAGACGGTGTCGCCAGCATTACCCTGCCAACTGAAGACCTACGTGGGAAAGCAGAAAAGCAAAACATCCAACACATGGAGGGATACAATCTGTACATAGCTGTTACAGTTTTAGAAACAGCAAgcgGAGATTTAGAAGAAGCTGAGAGCACTTCAGTAAAGATAGTGACGTCTCCATACATCCTTGACATGTCTAAGACTAAGAAATACTTCACACCTGGAGGAAAGTTCTCTATTCTGGCCACTACCACCCACCCAGATGGATCCCCAGCCCCTGACCTCCGTATGAGGGCTTCAGTGTCAGTGACCTCTGTAGGAGGCACACAGGAGTCTAAGATGGAGGGATCCGGTAACTCTAAGGGTGAGGCTGTTCTCACCTTCGAAGTGCCCAAACTGGCCACGTCTATGGATATCAAGATGTTTGCTGAGGGAGAGGATAAAGAGGTAGTAGTGAGTGATGCCAAAATGACAGTGTCAGCAGTCCAGTCTGAGGGGAACAGCTACCTGAGTGTAGAGATAGAACATGTCACCCTGGAGCCTGGAGGAACCATGGCGGTCACTCTCAGAGACATCACCCCTCCAGGCACCCCACGACCAGCCTACATCTACTATATGGTCCTGAGTAAGGGCAGAGTGGTCCAGATGAACAGGGTCCAGAGGACTGAGCTGACCACCTTCAGTCTGCCCTACAGTCTTGACCTAGTCCCTTCCTTCAGACTGGTGGCCTACTACTTCACACAGGCACCAGAGAAGACTACCATAGTGGCTGACTCTGTATGGGCCGATGTCAAAGATATCTGCAAAGGACAGATCGAGATCCTTCCATTTAAAGAGCATAAACCAGCTGACTTGGTGACTGTGGTGGTCCGTACAGACCAGGGAGACAAGGTAGCTCTGGCTGCTGTAGACACAGCTGTTTACATCCTCAACAAGAACAACAAACTCACTCCTCAGAAGATGTTTGCCTACATGAACTCCTATGACCTGGCGTGTTCTATGGGAGGGGGCAGGAACTCCCAGTCTGTGTTACAGGACGCTGGGCTCACCTTTATAACCAACTGGGTGGATACAGAGAATCACGTGAGAAATGATTACTCCTGTAACaccagaagagagaagagagcctTGAACCATCACCAGGCTTTCTCTGATATCATCAACAGGTACCCAGATAATATGGAGAAGAGGTGTTGTCAGGATGGGGCCAGGTTTAACAGCCTGGGTCTGTCCTGTGAGAGTCGTCATGCTAAAACCACCCACAAGTCTATTTCCTGTCGCACTGCCTTCCtcaagtgctgcagagatgccaCCAAGCTGAGGAACAACATCAAGAAGACCAGGAAGACATATAGCCTGGCTAGAaTGGACGATGATATGGATGAGGAGGAGGCCATAGATGAGGTGTCTGTCCACCTGCGCTCTTACTTCCCTCAGACCTGGATGTGGGACATCGTTGATGTGGAGCCCTCTGGTCTCGTAAGACACAGTATTGCTGTCCCTGACTCCATCACTACCTGGGAGGTTCAAGCAGTGGGAATCTCTAAAACAAAAGGGTTTTGTATAGCTGAGCCCAAGCCTCTGGTGGTGTTCCAGGACTTCTTTGTCTCGCTCAGACTGCCCTATTCTGTGAAGAGAAACGAACAGCTGCAGGTGAAAGCTGTTGTGTACAACTACAGAACCGACAGTATGGAGGTGACAGTAGAGCTGGCGTGGGTGGAGGGTCTGTGCAgtgcagggggagacagaggggacaaGGAGGTGGTGACAGTACCTGGTAAGTCTGCTGTCCCTGTCTACTTCACCGTGGTTCCTCTGGTCATAGGAAACATCCCTATCCAGGTAGAGGCCTACACTAAGACCGCTCGCGACCAGATCAAGAAGGACCTCAAAGTCACGGGGGAAGGGGAACTGGTCTCAATACAACATGAATACAACATTGATGGGAATGCTGCCAAGTCAATCGAACTTAAAATCCCACCTCCTCCTAGTGCTGTACCTGGACTGGAATCTGACGCCTACATCAGTGTCAAAGGTGGCGTGATGGGAGAGTCCGTGGAGAACTGTCTGAACCTGGATGGAGTGGACCGGCTCATCTCCCTACCCATGGGGTGTGCGGAGCAGACAATGGTCACCATGTCTCCAGCCATCCACGCCATGAGATACCTGGACACCACGGGACAGTGGATCGACCTGAAGGCTGAACGCAGAGACGAAGCTCAGGCCATGATACAGGCTGGATACGGCAGAATCCTGACCTTCAAGAAGACAGACGGATCCTATGGAGCTTTCCTGTCAACCCCAAGCAGTGTTTGGTTGACAGCCTTTATAGCCAAGGAGTTGTCCCAGTGCAGGGACGTGATTTCAGTGGAGGACTCCTACATCCAACAGTCCATCTCCTACCTGGTGTCTAAACAGCTGTCCAGTGGAGGCTTCACTGACCCTAACCCACTCTATGACCGCACCATGCAGGGTGGAGTGGGAGGGTTTGAGGGAGAGGTGTCCCTGACAGCGTTCGTTCTGATAGCCATGCACCACGCTGTGCCGCTGTACACTGAAGGACAAGACTCAGAAGTGAGGTATGCTATGGAGCAGGCTAAGGTCTACCTGGGGTCGAAGCTGGACTCCCTTGAGAGGCCCTTCGCTGTATCCATCACCTCCTATGCCCTCTCTCTAACGTCCCCTGGTGGAGATGCTGCTTCCACGGCTCAGACCAAACTCAGGGCTTTGGCACACTGCGACAACGAGGAAGCTACATGTCACTGGGAGGCCAGTGATGCTCTAAGGCTGAGTGGGGAGAAGAGGGCCAATCGGGTTCCCCAGGCAAAGGCCATCTCTGTGGAGACCACGGCCTACGCCCTGCTCCAGACGGTGGCGGAGGAAGACGTGACGTATGCGACGCACATTGCCCGCTGGCTCACTGAGCAGAGGCAGTATGGAGGAGGGTTCCGCTCTACACAGGATACAGTTGTAGCTCTTGAGGCTCTAGCTAAGTACAGCATCCTGGAAAATGATGTTGAAGACTTGGAtcttaatgttgagatgtgtcaccAAAATGGCCGAAAGCAGGGAGTTCATCTTACGAAACATAATGCCCTGACCCTATCAGCCTTCCAGGTGAACCCAGGAAGCCCGATCACTATTAACACAATAGGGAAGGGAAACGGGACCTTATCCGTGGTCCAGACCTACAGAACTCTGGAGAAGAAGGACTTGTTCTGTGATTTCTACAGTCTCAAAGTCTCGGTGGAGGGAGAGGTTAAGTACAGAAAGACCGCGGACGATGGTCCTGAGCTAGACGACTATTATAACTATGAGTCTGAAGGGGACGGGAACCCTAGTGATGAGCCTATGAGCAGGGTAGAATGGTTTGACCTGCGCACACGCAGGAAGAGACATGCCCcacaggaggatgaggagagggagaagtccctagtctacactgtgtgtgtgggaCTGACCAGTGGTAATTCTACAGGCATGGTCATCGTGGACATCTCCCTTCTCAGTGGACTCAAACCTAACATGCAGGATCTGGAGgagaATGTGAAGGGTACTGAGAAGTACATTGACCATTATGACGTCGCCCCAAATAAAGTGTTCCTCTACTTCGCTAAGATCACAGAGGAACCCCAGTGTGTAGCGTTCCGGGCCAAACAGATCAGTCCCATGGGCCTGGTGCAGCCCGCTGCTGCTGTGGTCTATGACTACTACAACCCAGAGAGGAGATGCACTGTGTTCTACAGCGCACCGCAGAAGAGCAACATGATCTCCAAGATCTGTCAGGACAATGTGTGCTCCTGTGCAGAGGGTGACTGCCCAAAGAAGAGAGTCACTTACAGTAAACAAATGGAGAAAGAGACTCGCAGAACCTTTGCTTGTTTCTTTCCTGTTGCGAATTATGTTTACATCGTCAAGATTGTCAACTCATCCGACGACGGAGTTTTTAAACATTATACCACAATACTGACCAAAATCCTACAGACAGGTAAAGACGTGATGCAGACTGGAGCAGTGAGAGACATGATCAAGCGTAAAGCCTGTGATGAGTTTGACATGAAGACTGACAGTAACTACCTGATCATGGGGAGAGATGGAACCATCTCTCACACCACTGACCACAGTGGGAAGCCTGTCTATGTCCTGGATAATAAGATGTGGTTGGAAGAGATTCCAGAGGAGAGGAAGTGTAAAGCTACTAAGAACCGTAAAGCCTGCAACATGCTCAAGGACTTCATGGTATATTACGAGCTCAACCAGTGTTCAATCTAAACCACGGCTTCCCTTCAGTGAACGTCCAGATATAAATAAATTATATAGAACAGACATGTTTTTCTGCCATTGAGAATAGGGAAATATGTTGGCTCTATgcaatacatttctatctgaaacgTTTCAGAAAGTTGTGCCTCCTGAATGTCACCTGACCTAGGATAACAGTCCTGGGaatcaacagagagagactgtgattcAGAGAAGGATATATGTTTTTGTATAGAGGAAAGCAGAAAGCACACTCAGTATCTCCATAAACCATGTGCTTTTATTACCCGTGCATATTCACAGAGAAAGAAGATTGAGAGACATATTGTTGAAACAAAGTTAGACTGTGATGTGCCTAATACTCCTTAATAAAATAGCCTGTGATTGGCTACAATC

Function

NR:

description
complement C4-B-like

GO: NA

KEGG:

id description
K03989 C4; complement component 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965529.1 True 5751 mRNA 0.48 41 17786275 17814495

Neighbor

gene id symbol gene type direction distance location
LOC110507114 LOC106581006 coding upstream 5884 17670454 ~ 17780391 (+)
si:dkey-56d12.4 NA coding upstream 302146 17481701 ~ 17484129 (+)
LOC110507111 LOC106581013 coding upstream 407942 17321743 ~ 17379119 (+)
LOC110507110 LOC106581014 coding upstream 464994 17293322 ~ 17321281 (+)
dcnl4 dcnl5 coding upstream 499120 17266189 ~ 17287155 (+)
brip1 brip1 coding downstream 386301 18200796 ~ 18243226 (+)
LOC118944759 NA coding downstream 554768 18369263 ~ 18378985 (+)
LOC110507678 LOC106612861 coding downstream 932700 18747195 ~ 18770034 (+)
LOC110507679 ripl1 coding downstream 956331 18770826 ~ 18789238 (+)
LOC110507680 LOC106581030 coding downstream 975057 18789552 ~ 18796852 (+)
G2057902 NA non-coding upstream 21704 17764306 ~ 17764571 (+)
G2057854 NA non-coding upstream 117198 17668695 ~ 17669077 (+)
G2057839 NA non-coding upstream 136495 17649459 ~ 17649780 (+)
G2057825 NA non-coding upstream 161706 17624275 ~ 17624569 (+)
G2057813 NA non-coding upstream 175895 17607487 ~ 17610380 (+)
G2057943 NA non-coding downstream 55873 17870368 ~ 17870614 (+)
G2057950 NA non-coding downstream 69866 17884361 ~ 17884605 (+)
G2057958 NA non-coding downstream 84072 17898567 ~ 17900322 (+)
G2057960 NA non-coding downstream 88736 17903231 ~ 17903470 (+)
G2057962 NA non-coding downstream 89619 17904114 ~ 17904324 (+)
G2057804 NA other upstream 200351 17583970 ~ 17585924 (+)
G2057788 NA other upstream 219891 17555504 ~ 17566384 (+)
G2057561 NA other upstream 569732 17213110 ~ 17219017 (+)
LOC110507087 LOC106612902 other upstream 1375906 16391021 ~ 16410705 (+)
G2056820 NA other upstream 1410232 16374266 ~ 16376043 (+)
G2057945 NA other downstream 59306 17873801 ~ 17875832 (+)
G2059435 NA other downstream 756604 18571099 ~ 18594842 (+)
G2059714 NA other downstream 1277452 19091947 ~ 19092272 (+)
G2059777 LOC106581039 other downstream 1378962 19193457 ~ 19195184 (+)
LOC110507725 LOC106581066 other downstream 2243748 20058224 ~ 20059968 (+)

Expression


Co-expression Network