LOC118944759


Basic Information

Item Value
gene id LOC118944759
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18369263 ~ 18378985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040053.1
CCAAGCCAAACACCGGGTCAGCCCTCAATTCTTGGCCGGTGGAGGCATCACCTCGTTCGGCTTGCGCTTTATACTTTCGACGAGGTGCATAACTCCAGCCCAGAAACAATACCCGAATAGATAGCCTACGTTTATTGCTCTTTAGTCGCTTTCATTATAGTCTAGAGGTAGGCTAAATCAAGTTAGTAGGCTATACCGGTGATTGATTTTTTAAAGTATGAATTTAGCTCAGGAAAACGAAGATTTCAAATAGATTCGTTGTGGTTCCATTTCATGTGAAGATTATGTTGTCAGTTTAGGTCAATTTATCTCATAGCCATTATATCTGGTTTCGTTTGTTTAGAAATCCGCGTGCAGTTATAGCTGTTGAAGTGTTGATCGTGGTTTGGCCAAAATAGCATACAGTTAGTTCCCTCACTGGTTGTGCTTAATGATATACTTACACAGACAATGCTGAGACGGAAAGAGAGTCCACAGCCACCCGTACCTGAATGGTGGGCTATCGGACTCGATTTAGTGATTATATTTCAGGGCTGTCCATTTCCGTGACTCGCTGCTGTTTTGTGAACGATTCACAGCAAGGACAGCGACTAATAAACCGGACATTGCCACTTTAAAAACTGCCCCGGGCCATTTGAAAAGCGCAGAGACAGATGCTGCGTCGAGGCAAGAAGAAAAGAAAACAAATGAATTTGTTCATTTGGGCAACATCGACAGATATATAACGCGCataaactgcaacattttcagcATAAACTGAAACATAAACTGAAATATGTCTATCCTCTGAGCGTGAGGACACAACAGCGTCCTGACTCGCCTGAACAGTTTGTTGGTTGaaaacacacaatactccatgcaGCTCCGGGAATGTTCCTGCCTGCAGCCGGCCCTCTCCTCCCCGGCTTCCCAAACTTTGATCAGCGAGGCCTAGCCGCGGAGCCGCTTGAGCCGTGCAGCATGGTTTGCTGGCAGAGGAGGATGGGTATAAATGGAGACTGTCACAGGAGAGGAGGGTAAAAACCAGGGGCATGTTCAGGAGGCAACCTTTTGAAACAGAGTGAAACAGCTAAGGTGTGCCCTCCTTTAACAGGCCCCTGCCCCTGGTAGAGGTGCAAGCTGGGGCACTGGCCTGGGCATGGTTCCCTCAGACTCAGAGAGACATTGGCATGCAGGGCATCATGTCACAGTGTGGGGCACCAGGGGAGCGTCAGTGGGcaaaccatagaaatataatgaatagaacaggcgtccccattcaagtcaattatgcccacagtggaggtgtcataatacccataaaacccagtGGTCagacagggaaatggttccaatcgttttatCCATCAttaatttttcccataggggaatTTAGAAATACTTCAAATTAGGGCTGTGTTtcttgtaggcttaccctggtgtgatgttatgataaccatgtaaatctctctcggacaaggtgacttatcaatatatttggctctatttactctcagattcaaaaatgctaattagcttcAAAGTAGACATCACACAAAACTACAAATctctgcaagctcctgcacgtcatcacTAGCTGACACCTCTGCTatcaggtattgtgtcaatttaaaactgcCAAAAGGGCAGTgctgaggcgtcactacagcctcgggttcgatcccagccggctgtgaccgggagacacatgaggcggcgcacaattggcccaagttagggaagggtttggccggc
>TU2355106
GTGCATAACTCCAGCCCAGAAACAATACCCGAATAGATAGCCTACGTTTATTGCTCTTTAGTCGCTTTCATTATAGTCTAGAGGTAGGCTAAATCAAGTTAGTAGGCTATACCGGTGATTGATTTTTTAAAGTATGAATTTAGCTCAGGAAAACGAAGATTTCAAATAGATTCGTTGTGGTTCCATTTCATGTGAAGATTATGTTGTCAGTTTAGGTCAATTTATCTCATAGCCATTATATCTGGTTTCGTTTGTTTAGAAATCCGCGTGCAGTTATAGCTGTTGAAGTGTTGATCGTGGTTTGGCCAAAATAGCATACAGTTAGTTCCCTCACTGGTTGTGCTTAATGATATACTTACACAGACAATGCTGAGACGGAAAGAGAGTCCACAGCCACCCGTACCTGAATGGTGGGCTATCGGACTCGATTTAGTGATTATATTTCAGGGCTGTCCATTTCCGTGACTCGCTGCTGTTTTGTGAACGATTCACAGCAAGGACAGCGACTAATAAACCGGACATTGCCACTTTAAAAACTGCCCCGGGCCATTTGAAAAGCGCAGAGACAGATGCTGCGTCGAGGCAAGAAGAAAAGAAAACAAATGAATTTGTTCATTTGGGCAACATCGACAGATATATAACGCGCataaactgcaacattttcagcATAAACTGAAACATAAACTGAAATATGTCTATCCTCTGAGCGTGAGGACACAACAGCGTCCTGACTCGCCTGAACAGTTTGTTGGTTGaaaacacacaatactccatgcaGCTCCGGGAATGTTCCTGCCTGCAGCCGGCCCTCTCCTCCCCGGCTTCCCAAACTTTGATCAGCGAGGCCTAGCCGCGGAGCCGCTTGAGCCGTGCAGCATGGTTTGCTGGCAGAGGAGGATGGGTATAAATGGAGACTGTCACAGGAGAGGAGGGTAAAAACCAGGGGCATGTTCAGGAGGCAACCTTTTGAAACAGAGTGAAACAGCTAAGGTGTGCCCTCCTTTAACAGGCCCCTGCCCCTGGTAGAGGTGCAAGCTGGGGCACTGGCCTGGGCATGGTTCCCTCAGACTCAGAGAGACATTGGCATGCAGGGCATCATGTCACAGTGTGGGGCACCAGGGGAGCGTCAGTGGGcaaaccatagaaatataatgaatagaacaggcgtccccattcaagtcaattatgcccacagtggaggtgtcataatacccataaaacccagtGGTCagacagggaaatggttccaatcgttttatCCATCAttaatttttcccataggggaatTTAGAAATACTTCAAATTAGGGCTGTGTTtcttgtaggcttaccctggtgtgatgttatgataaccatgtaaatctctctcggacaaggtgacttatcaatatatttggctctatttactctcagattcaaaaatgctaattagcttcAAAGTAGACATCACACAAAACTACAAATctctgcaagctcctgcacgtcatcacTAGCTGACACCTCTGCTatcaggtattgtgtcaatttaaaactgcCAAAAGGGCAGTgctgaggcgtcactacagcctcgggttcgatcccagccggctgtgaccgggagacacatgaggcggcgcacaattggcccaagttagggaagggtttggccggccgggatttccttgtctcatcgtACTCTAGTgtctccttgtggcgggccgggcgcctgcaagctgattTCGGGTGGTCAGttggatggtgtttcctctgacacattggtgcggctggattttgagttaagcgagcagtgtgtcaagaagcagtgcggcttggcagggtcgtgttgcggaggacgcatggctctcgaccttcacctctcccgagtccgtagtgGAGTTGCAGCGACGAGACAAGACTAACTATCAATTGgggagagtttttttttttttaaccaaaagaCAGTTCACAGAAATGTCAGTTTAAAGAAATGTAgacaatttatttattactacatttagctaacagatagttaatccagagattcttacctttgcctcgattcggcagCCTCCTCCAGGTCATCCTCCAggtcatcatggcatttgtagttcttaatgatagccacattagcagctaattagcg
>TU2355107
GTGCATAACTCCAGCCCAGAAACAATACCCGAATAGATAGCCTACGTTTATTGCTCTTTAGTCGCTTTCATTATAGTCTAGAGGTAGGCTAAATCAAGTTAGTAGGCTATACCGGTGATTGATTTTTTAAAGTATGAATTTAGCTCAGGAAAACGAAGATTTCAAATAGATTCGTTGTGGTTCCATTTCATGTGAAGATTATGTTGTCAGTTTAGGTCAATTTATCTCATAGCCATTATATCTGGTTTCGTTTGTTTAGAAATCCGCGTGCAGTTATAGCTGTTGAAGTGTTGATCGTGGTTTGGCCAAAATAGCATACAGTTAGTTCCCTCACTGGTTGTGCTTAATGATATACTTACACAGACAATGCTGAGACGGAAAGAGAGTCCACAGCCACCCGTACCTGAATGGTGGGCTATCGGACTCGATTTAGTGATTATATTTCAGGGCTGTCCATTTCCGTGACTCGCTGCTGTTTTGTGAACGATTCACAGCAAGGACAGCGACTAATAAACCGGACATTGCCACTTTAAAAACTGCCCCGGGCCATTTGAAAAGCGCAGAGACAGATGCTGCGTCGAGGCAAGAAGAAAAGAAAACAAATGAATTTGTTCATTTGGGCAACATCGACAGATATATAACGCGGTTGaaaacacacaatactccatgcaGCTCCGGGAATGTTCCTGCCTGCAGCCGGCCCTCTCCTCCCCGGCTTCCCAAACTTTGATCAGCGAGGCCTAGCCGCGGAGCCGCTTGAGCCGTGCAGCATGGTTTGCTGGCAGAGGAGGATGGGTATAAATGGAGACTGTCACAGGAGAGGAGGGTAAAAACCAGGGGCATGTTCAGGAGGCAACCTTTTGAAACAGAGTGAAACAGCTAAGGTGTGCCCTCCTTTAACAGGCCCCTGCCCCTGGTAGAGGTGCAAGCTGGGGCACTGGCCTGGGCATGGTTCCCTCAGACTCAGAGAGACATTGGCATGCAGGGCATCATGTCACAGTGTGGGGCACCAGGGGAGCGTCAGTGGGcaaaccatagaaatataatgaatagaacaggcgtccccattcaagtcaattatgcccacagtggaggtgtcataatacccataaaacccagtGGTCagacagggaaatggttccaatcgttttatCCATCAttaatttttcccataggggaatTTAGAAATACTTCAAATTAGGGCTGTGTTtcttgtaggcttaccctggtgtgatgttatgataaccatgtaaatctctctcggacaaggtgacttatcaatatatttggctctatttactctcagattcaaaaatgctaattagcttcAAAGTAGACATCACACAAAACTACAAATctctgcaagctcctgcacgtcatcacTAGCTGACACCTCTGCTatcaggtattgtgtcaatttaaaactgcCAAAAGGGCAGTgctgaggcgtcactacagcctcgggttcgatcccagccggctgtgaccgggagacacatgaggcggcgcacaattggcccaagttagggaagggtttggccggccgggatttccttgtctcatcgtACTCTAGTgtctccttgtggcgggccgggcgcctgcaagctgattTCGGGTGGTCAGttggatggtgtttcctctgacacattggtgcggctggattttgagttaagcgagcagtgtgtcaagaagcagtgcggcttggcagggtcgtgttgcggaggacgcatggctctcgaccttcacctctcccgagtccgtagtgGAGTTGCAGCGACGAGACAAGACTAACTATCAATTGgggagagtttttttttttttaaccaaaagaCAGTTCACAGAAATGTCAGTTTAAAGAAATGTAgacaatttatttattactacatttagctaacagatagttaatccagagattcttacctttgcctcgattcggcagCCTCCTCCAGGTCATCCTCCAggtcatcatggcatttgtagttcttaatgatagccacattagcagctaattagcg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040053.1 False 1734 mRNA 0.47 4 18369263 18378514
TU2355106 False 2121 lncRNA 0.46 4 18369347 18378985
TU2355107 True 2015 lncRNA 0.47 3 18369347 18378985

Neighbor

gene id symbol gene type direction distance location
brip1 brip1 coding upstream 126037 18200796 ~ 18243226 (+)
LOC110507666 LOC106581002 coding upstream 554768 17786275 ~ 17814495 (+)
LOC110507114 LOC106581006 coding upstream 588872 17670454 ~ 17780391 (+)
si:dkey-56d12.4 NA coding upstream 885134 17481701 ~ 17484129 (+)
LOC110507111 LOC106581013 coding upstream 990930 17321743 ~ 17379119 (+)
LOC110507678 LOC106612861 coding downstream 368681 18747195 ~ 18770034 (+)
LOC110507679 ripl1 coding downstream 392312 18770826 ~ 18789238 (+)
LOC110507680 LOC106581030 coding downstream 411038 18789552 ~ 18796852 (+)
sarm1 LOC106612856 coding downstream 426656 18805170 ~ 18820231 (+)
LOC110507684 LOC106581033 coding downstream 459718 18838232 ~ 18849272 (+)
G2059153 NA non-coding upstream 108622 18260387 ~ 18260641 (+)
G2059152 NA non-coding upstream 109214 18259831 ~ 18260049 (+)
G2059102 NA non-coding upstream 115802 18253200 ~ 18253461 (+)
G2058835 NA non-coding upstream 282433 18086628 ~ 18086830 (+)
G2058800 NA non-coding upstream 333599 18035432 ~ 18035664 (+)
G2059292 NA non-coding downstream 549 18379063 ~ 18379710 (+)
G2059380 NA non-coding downstream 129705 18508219 ~ 18509929 (+)
G2059402 NA non-coding downstream 153981 18532495 ~ 18600174 (+)
G2059416 NA non-coding downstream 171251 18549765 ~ 18551608 (+)
G2059594 NA non-coding downstream 475052 18853566 ~ 18855198 (+)
G2057945 NA other upstream 493431 17873801 ~ 17875832 (+)
G2057804 NA other upstream 783339 17583970 ~ 17585924 (+)
G2057788 NA other upstream 802879 17555504 ~ 17566384 (+)
G2057561 NA other upstream 1152720 17213110 ~ 17219017 (+)
LOC110507087 LOC106612902 other upstream 1958894 16391021 ~ 16410705 (+)
G2059435 NA other downstream 192585 18571099 ~ 18594842 (+)
G2059714 NA other downstream 713433 19091947 ~ 19092272 (+)
G2059777 LOC106581039 other downstream 814943 19193457 ~ 19195184 (+)
LOC110507725 LOC106581066 other downstream 1679729 20058224 ~ 20059968 (+)
G2061226 NA other downstream 1926868 20305382 ~ 20306608 (+)

Expression


Co-expression Network