LOC110507678 (LOC106612861)


Basic Information

Item Value
gene id LOC110507678
gene name LOC106612861
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18747195 ~ 18770034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587823.2
GTGTTGGTCGAAATCCATCAAACAGCGTACTGTACGTTCGTGAATTCAAGCGAATTGCGCGCAACGTGCGGTGTCGTTCACACTGCATGCTTTGGACAGGAGGAAGGCTAATCAATACAATCGTGAAAAGCGGGGAAAAGTTCATTGAATTTTTACAGAGAGATGTTGTTATAATCGTGTGCAAACCAAGGCAATTTTCATTACAAAGCAGTTATCCTGGACGTGGAGCAGGAGTTGTGAGTCGCCATGGCAGCTGCCTTCCCATATAGAGGGGTACCAGGTGGAATGCCCCCAGGTATCCATCCCCCAGCCCAGGTTCCAGACTACATGTCTGAGGAAAAACTGCAAGAGAAAGCCAGAAAATGGCAGCAGTTGCAGGCAAAGCGCTACTCTGAGAAGAGGAAGTTTGGGTTTGTTGACGCCCAGAAGGAGGACATGCCACCTGAGCACGTCCGTAAGATCATCAGGGACCACGGTGACATGACCAACAGGAAATTCCGTCACGACAAGAGGGTATACCTGGGAGCTCTGAAGTACATGCCCCACGCGGTGCTGAAGCTACTGGAGAACATGCCCATGCCCTGGGAGCAGATCAGAGACGTGCCTGTCCTATACCACATCACTGGAGCCATCTCCTTCGTCAACGAGATCCCCTGGGTCATAGAGCCTGTCTACATCGCCCAGTGGGGCGCCATGTGGATCATGATGCGTCGTGAGAAGAGGGACCGTCGTCACTTCAAGCGTATGCGCTTCCCTCCTTTTGACGATGAGGAACCTCCCCTGGACTACGCTGATAACATCCTGGATGTGGAGCCACTGGAGGCCATCCAGATGGAGCTGGATGCAGAAGAGGACTCCTCCGTGGCTGAGTGGCTCTACGAACACCAGCCCCTCAAGGACGCCAACAAGTATGTGAACGGGACCACGTACAGGCGTTGGCAGTTCACCCTGCCCATGATGTCCACGCTGTACCGTCTGGCCAACCAGCTGCTGACTGACCTGGTGGACTACAACTATTTCTACCTGTTTGACCTGAAGGCCTTCTTCACCTCCAAGGCCCTCAACATGGCCATCCCCGGGGGACCTAAGTTTGAACCCCTAGTTAGGGACATCAACCTCCAAGATGAAGACTGGAACGAGTTCAACGACATCAACAAGATCATCATCAGACAGCCAATCAGGACGGAGTACAAGATTGCCTTCCCATACCTGTACAACAACCTTCCCCACCACGTTCACCTCACCTGGTACCACACTCCCAATGTGGTGTTCATCAAGACTGAGGATCCTGATTTGCCAGCGTTTTACTTTGACCCCCTGATCAACCCCATCTCCCACAGACACTCAGTCAAGAGTCAGGAGCCTCTGCCAGAGGATGACGAAGAGTTTGAGCTTCCAGAGTACGTGGAGCCCTTCCTGAAGGAGACACCCctctacacagacaacacagccAATGGAATCGCTCTGCTCTGGGCACCACGCCCCTTCAACTTGCGCTCTGGGAGGACCAGGCGGGCCATCGACATCCCACTCATCAAGAACTGGTATCGTGAGCATTGCCCAGCCGGCCAGCCAGTGAAGGTGCGGGTGTCTTACCAGAAACTGCTCAAGTACTATGTACTCAACGCTCTCAAACACAGACCACCCAAGGCCCAGAAGAAGAGGTACTTGTTTCGTTCCTTTAAAGCCACCAAGTTCTTCCAGTCAACTAAGCTGGACTGGGTGGAGGTGGGCCTGCAGGTGTGCAGACAGGGATACAACATGCTGAACCTGCTCATCCACCGCAAGAACCTCAACTACCTGCACCTGGATTACAACTTCAACCTCAAGCCTGTCAAGACCCTCACCACGAAGGAACGTAAGAAGTCCAGGTTCGGGAATGCCTTCCATCTGTGCAGAGAGGTGCTGCGTCTCAGCAAGCTGGTGGTGGACAGCCACGTGCAGTACAGACTGGGCAACGTGGATGCTTTCCAGTTGGCAGACGGGCTGCAGTACATCTTTGCCCACGTGGGCCAGCTGACTGGCATGTACCGCTACAAGTACAAGCTGATGAGACAAATCCGGATGTGCAAGGACCTCAAGCACCTCATCTACTACCGCTTCAACACTGGTCCAGTGGGTAAGGGTCCAGGCTGTGGGTTCTGGGCACCAGGATGGAGAGTGTGGCTGTTCTTTATGAGGGGCATCACCCCTCTGCTGGAGAGATGGCTGGGCAACCTGCTGGCCAGGCAGTTTGAAGGTCGTCACTCCAAGGGCGTGGCGAAGACTGTGACGAAGCAGCGTGTGGAGTCCCACTTTGACCTGGAGCTGCGTGCGGCCGTGATGCACGACATCCTGGACATGATGCCTGAGGGCATCAAGCAGAACAAGGCCAGAACCATCCTGCAGCACCTCTCTGAGTCCTGGCGCTGCTGGAAGGCCAACATCCCCTGGAAGGTCCCAGGCCTGCCCACACCCATCGAGAACATGATCCTACGCTACGTGAAGGCCAAAGCTGATTGGTGGACCAACACAGCCCACTACAACCGCGAGCGAATTAGGCGCGGCGCAACCGTGGACAAGACTGTGTGCAAGAAGAACCTGGGCAGACTGACCCGTCTGTACCTGAAGGCTgagcaggagaggcagcacaACTACCTGAAGGATGGTCCATACATCACAGCAGAGGAGGCTGTGGCCATCTACACCACAACAGTCCACTGGCTGGAGAGCAGACGCTTCTCCCCCATCCCCTTCCCCCCACTGTCCTACAAACACGACACCAAACTGCTCATCCTGGCTCTGGAGAGGCTCAAAGAggcctacagTGTGAAGTCCAGGCTGAACCAGTCTCAGAGAGAGGAGTTGGGGCTGATAGAGCAGGCCTATGACAACCCTCACGAGGCCCTGTCCAGAATCAAACGGCACCTGCTCACACAGAGAGCCTTCAAAGAGgtTGGCATAGAGTTCATGGACCTGTACAGTCACCTGGTGCCTGTGTATGATGTGGAGCCCCTGGAGAAGATCACGGATGCCTACCTGGACCAGTACCTGTGGTATGAGGCTGACAAACGACGTCTCTTCCCCCCCTGGATCAAACCAGCTGACACAGAGCCTCCTCCACTCCTCGTCTACAAGTGGTGCCAAGGCATCAACAACCTGCAGGATGTGTGGGAGACGATGGAGGGAGAGTGTAACGTGATGCTGGAGTCTCGCTATGAAAAGATGTATGAGAAAATAGATCTGACGCTGCTCAACAGACTGCTGCGTCTCATCGTGGACCACAACATCGCTGACTACATGACTGCCAAGAACAATGTGGTCATCAACTACAAGGACATGAACCACACCAACTCGTACGGTATCATCCGTGGTCTGCAGTTTGCCTCGTTCATCGTGCAGTACTACGGCCTGGTCATGGACCTGTTGGTGCTGGGCCTCCACCGGGCCAGTGAGATGGCTGGACCCCCTCAGATGCCCAACGACTTCCTGTCCTTCCAGGATACAGCCACAGAGAGTGCCCACCCCATCCGCCTCTACTGCAGATACATCGACCGCATACATATCTTCTTCAGGTTCTCAGCTGATGAGGCCAGGGACCTTATCCAGAGGTACCTAACGGAGCACCCTGACCCCAACAATGAGAACATTGTGGGCTACAACAACAAGAAGTGCTGGCCCAGAGACGCCAGGATGAGACTGATGAAGCACGACGTCAACCTGGGTCGTGCTGTGTTCTGGGACATTAAGAACCGCCTGCCTCGCTCTGTGACCACGGTGCAATGGGAGAACAGCTTTGTGTCAGTCTACAGCAAAGACAACCCTAACCTGCTCTTCAACATGTGTGGCTTCGAGTGCCGCATCCTGCCCAAGTGTCGCACCAGCTACGAGGAGTTCACCCACAAGGACGGAGTCTGGAACCTGCAGAACGAGgtgaccaAAGAGCGTACTGCCCAGTGTTTCCTGCGTGTGGATGATGAGTCCATGCAGCGGTTCCACAACAGAGTCAGACAGATCCTCATGGCCTCAGGATCCACCACCTTTACCAAGATTGTCAACAAGTGGAACACGGCTCTGATAGGGCTGATGACGTACTTCCGTGAGGCGGTGGTCAACACCCAGGAGCTGCTGGACCTGCTGGTGAAATGTGAGAACAAGATCCAGACACGTATCAAGATCGGTCTCAACTCCAAGATGCCCAGTCGCTTCCCCCCTGTAGTCTTCTACACCCCCAAGGAGCTGGGAGGGCTGGGCATGCTGTCCATGGGACACGTCCTCATCCCACAGTCGGATCTGAGGTGGTCAAAACAGACTGACGTTGGCATCACCCATTTCCGGTCCGGTATGAGCCACGAGGAGGACCAGCTGATTCCTAACCTGTACCGCTACATCCAGCCCTGGGAGAGTGAGTTCATCGACTCCCAGAGAGTTTGGGCAGAGTACGCCCTGAAGAGACAGGAGGCTATCGCACAGAACAGGCGTCTGACCCTGGAGGACTTAGAGGACTCTTGGGACAGAGGTATCCCCCGTATCAACACCCTGTTCCAGAAGGACAGACACACGCTGGCCTACGACAAGGGCTGGAGGGTCCGCACTGACTTCAAACAGTACCAGGTGCTGAAGCAGAACCCGTTCTGGTGGACCCACCAGCGTCACGACGGGAAGTTGTGGAACCTCAACAACTACAGGACAGACATGATCCAGGCTCTGGGAGGGGTGGAGGGCATCCTGGAACACACACTCTTCAAAGGGACTTACTTCCCCACCTGGGAGGGTCTCTTCTGGGAGAAAGCCAGTGGCTTTGAGGAGTCCATGAAGTGGAAGAAGCTGACCAACGCCCAGAGATCTGGTCTGAACCAGATCCCCAACCGTCGCTTCACCCTCTGGTGGTCCCCCACCATCAACAGGGCCAACGTGTACGTGGGTTTCCAGGTGCAGCTGGATCTGACCGGGATCTTCATGCACGGAAAGATCCCCACCCTGAAAATCTCCCTCATCCAGATCTTCAGGGCTCACTTGTGGCAGAAGATCCACGAGAGCGTCGTCATGGATCTCTGTCAGGTGTTTGACCAGGAGCTGGATGCCCTGGAGATCGAGACAGTGCAGAAAGAGACCATTCACCCCAGGAAGTCCTACAAGATGAACTCTTCCTGCGCCGACATACTACTCTTCGCCTCCTACAAGTGGAACGTCTCACGCCCCTCCCTGCTCGCTGACTCAAAggATGTGATGGACAGCACCACCACCCAGAAGTACTGGATCGACATACAGCTTCGCTGGGGAGACTATGACTCTCACGACATCGAGCGCTACGCCAGAGCCAAGTTCCTGGACTACACCACAGACAACATGAGCATCTACCCCTCCCCCACCGGGGTGCTCATCGCCATCGACCTTGCCTACAACCTCCACAGtGGGTACGGTAACTGGTTCCCGGGAGGCAAGCCCCTGATCCAGCAGGCCATGGCTAAGATCATGAAGGCCAACCCTGCTCTGTACGTCCTGAGGGAGCGCATCCGTAAGGGTCTGCAGCTCTACTCCTCAGAGCCCACTGAGCCCTACCTGTCCTCCCAGAACTACGGCGAGCTCTTCTCCAATCAGATCATTTGGTTTGTGGACGACACTAACGTATACCGTGTCACCATCCACAAGACGTTTGAGGGTAACTTGACCACCAAGCCCATCAACGGAGCAATCTTCATCTTCAACCCCAGGACAGGCCAGCTCTTCCTCAAGATCATCCACACCTCTGTGTGGGCCGGACAGAAACGTCTGGGACAGCTGGCGAAGTGGAAGACAGCTGAGGAGGTGGCTGCTCTGATTCGTTCCCTTCCTGTGGAGGAGCAGCCCAAACAGATCATTGTCACCAGGAAGGGCATGTTGGACCCCCTCGAGGTCCACTTGCTGGACTTCCCCAACATTGTGATCAAGGGCTCTGAGCTGCAGCTGCCcttccaggcctgtctgaaggtGGAGAAGTTTGGAGACCTAATCCTGAAGGCCACCGAGCCTCAGATGGTCCTGTTCAACCTGTATGACGACTGGCTCAAGACCatctcctcctacaccGCGTTCTCCCGTCTCATCCTGATCCTGAGGGCGCTCCATGTGAACAACGACTGTGCCAAGGTGATCCTGAAGCCCGATAAGACCACCATCACAGAGCCTCACCACATCTGGCCCACGCTGACCGATGAGGAGTGGATCAAGGTGGAGGTGCAGCTCAAAGACCTCATCCTGGCCGACTATGGAAAGAAGAACAACGTGAACGTGGCATCTCTGACCCAGTCTGAGATCCGTGACATCATCCTGGGCATGGAGATCTCTGCTCCGTCCCAGCAGCGCCAGCAGATTGCTGAGATTGAGAAGCAGACCAAGGAGCAGTCCCAGCTCACTGCCACGCAGACACGCACAGTCAACAAACACGGAGACGAGATCATCACCTCAACAACCTCCAACTATGAGACACAGACCTTCTCCTCCAAGACAGAATGGAGAGTCAGGGCCATCTCTGCTGCCAACCTGCACCTGAGGACCAACCACATCTACGTGTCGTCTGATGACATCAAGGAGACGGGCTACACCTACATCCTGCCCAAGAACGTCCTCAAGAAGTTCATCTGCATCTCAGACCTGCGAGCCCAGATTGCAGGTTACCTGTACGGCACCAGTCCCCCTGACAACCCCCAGGTGAAGGAGATCAGGTGTATTGTCATGGTACCCCAGTGGGGAACGCATCAGACCGTCCACCTACCCAATCAGCTGCCAGGACACGAGTACCTCAAGGAGATGGAGCCCCTGGGTTGGATCCACACCCAGCCCAATGAGTCTCCCCAACTCTCCCCCCAGGACGTCACCAGCCACGCCAAGATCATGGCTGACAACCCCGCCTGGGATGGAGAGAAGACCATCATCATCACCTGCAGTTTCACTCCCGGCTCCTGCACTCTGACGGCCTACAAGCTGACTCCCAGTGGGTACGAGTGGGGCAGACAGAACACAGACAAGGGCAACAACCCCAAGGGCTACCTGCCCTCCCACTATGAGAGGGTTCAGATGCTTCTGTCTGATCGCTTCCTGGGCTTCTTCATGGTGCCTGGACAGGTCTCCTGGAACTACAACTTCATGGgTGTTCGCCACGACCCCAACATGAAGTATGACCTGCAGCTGTCCAACCCCAAGGAGTTCTACCACGAGGTCCATCGGCCCTCTCACTTCCTCAACTTTGCCTCCCTGCAGGAGGGAGAGATCTACAACGCAGACAGAGAGGACATGTATGGTTGAGACTGGCGCTCCGCTCAGAGATGAGAGGATTACCTCTCTATTGTACATTTTCTATGATATGGACATCCTTATGCGGCCTGTCTAGTACAGTCAGACGTATCATTTGACCCAGCCAGCCATGAAGTTATGAATATAACTACTGCTCCATGAAGAAAGGAAATGAGGTACAGCACAGTAATGGCAAACTCACGAGTGTGTGATCTCCATAGCTGTGATGGACTGAGTGTACCAACTGATAGGGATGGCCTGAAGATATTGGGGAATTTGTATGTAAGCCTAGTACCACCTTTTTAGGACACAATGTCACATTGTGTATGTTTTCTGCAAAATTATGTTTGTTCCATTTGGTTGCCCTCTCCCCTCTGATCTCTCCAATAAGGCTTCAGCATGTGAATTCTACTGCGTTTCATTTATGGCTTTCCTTTTGACACATTGCTGCCAATGTGTAATGGTATTTGTGTTTGTCTTCAGTCTGTAGTAGTTGATATAGCTGTAAGATTAATTTTTCTGTGGCATTTCTTTAAATGGGTAGTTAACCATATTCATAatgctcttttttttctctcccataGAAACTGAACTGTGACAATGGAATTGATATGTACTGTTTATGCTAGCAGTCTCTTACCCACTTGCTATGTTGTGCATTCATTGTGGACACTTGGTTTGGgttaaaataaagataaacattttATAAGTA

Function

NR:

description
PREDICTED: pre-mRNA-processing-splicing factor 8-like

GO: NA

KEGG:

id description
K12856 PRPF8, PRP8; pre-mRNA-processing factor 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587823.2 True 7963 mRNA 0.54 43 18747195 18770034

Neighbor

gene id symbol gene type direction distance location
LOC118944759 NA coding upstream 368681 18369263 ~ 18378985 (+)
brip1 brip1 coding upstream 503969 18200796 ~ 18243226 (+)
LOC110507666 LOC106581002 coding upstream 932700 17786275 ~ 17814495 (+)
LOC110507114 LOC106581006 coding upstream 966804 17670454 ~ 17780391 (+)
si:dkey-56d12.4 NA coding upstream 1263066 17481701 ~ 17484129 (+)
LOC110507679 ripl1 coding downstream 792 18770826 ~ 18789238 (+)
LOC110507680 LOC106581030 coding downstream 19518 18789552 ~ 18796852 (+)
sarm1 LOC106612856 coding downstream 35136 18805170 ~ 18820231 (+)
LOC110507684 LOC106581033 coding downstream 68198 18838232 ~ 18849272 (+)
LOC110507685 LOC106581023 coding downstream 91789 18861823 ~ 18884306 (+)
G2059402 NA non-coding upstream 147021 18532495 ~ 18600174 (+)
G2059416 NA non-coding upstream 195587 18549765 ~ 18551608 (+)
G2059380 NA non-coding upstream 237266 18508219 ~ 18509929 (+)
G2059292 NA non-coding upstream 367485 18379063 ~ 18379710 (+)
G2059594 NA non-coding downstream 83532 18853566 ~ 18855198 (+)
G2059610 NA non-coding downstream 153052 18923086 ~ 18923594 (+)
G2059661 NA non-coding downstream 196288 18966322 ~ 18966840 (+)
LOC110507689 LOC106581036 non-coding downstream 219247 18956560 ~ 18991625 (+)
G2059717 NA non-coding downstream 324048 19094082 ~ 19094319 (+)
G2059435 NA other upstream 152353 18571099 ~ 18594842 (+)
G2057945 NA other upstream 871363 17873801 ~ 17875832 (+)
G2057804 NA other upstream 1161271 17583970 ~ 17585924 (+)
G2057788 NA other upstream 1180811 17555504 ~ 17566384 (+)
G2057561 NA other upstream 1530652 17213110 ~ 17219017 (+)
G2059714 NA other downstream 321913 19091947 ~ 19092272 (+)
G2059777 LOC106581039 other downstream 423423 19193457 ~ 19195184 (+)
LOC110507725 LOC106581066 other downstream 1288209 20058224 ~ 20059968 (+)
G2061226 NA other downstream 1535348 20305382 ~ 20306608 (+)
LOC110507744 p4ha3 other downstream 1934895 20697519 ~ 20708634 (+)

Expression


Co-expression Network