LOC110507679 (ripl1)


Basic Information

Item Value
gene id LOC110507679
gene name ripl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18770826 ~ 18789238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587824.2
TTTTTATTTGAATTGGGCCTCATATTATTGTTCTAGACTAGGGTTAGGTAAAATGTGTGACGTATACTCGAATGAGGTTCAAGTTTGAACGGGTTTGTTCTAGTCTCTGACCAAGCATGCAGAGTCAAGTTCGAGCATAGGGTGACGATTTGACGAATGCATTAAGTTTAGATGCAGCAGCATATCGCGCTGTTTATTGCGAGAACACTTTCGATTTAATTGTGTTTCGACTCTTTCACCGGGGAACTGTCATGTCACCGTGAGAACGACGTTCTTTTTATTTCTGGGTTTCGATAGTAAAACTTGTGCACTTGCACACTTGTGCAATAATGGAGAAGGATTTTGATAGAAACGATCAAAAGCAAGACGTCAAGAAGACAGAGGTGTGTTTTGAAAGGACATGTTCAGCACTAACTGTGGACGATGTATACGAAATAGCTAAATTGATTGGCTCGGAAGTGGAAACACTTATTGACGGCTACGGTAAAGAGAGCGCCACAGGACTGGTGCCTAAAATTGTCAAAGTTCTAGAACTTTTGGAGAGCTTCGCATCGCGGAACCATGCTCACAAGTCAAAAGAAGAAGAATTACTTAAAGCGTTCGAAACACTTAATGTACAGACACAGAAGAAGGCGAGAAATGTGAAAGAATGCGAAGAAAGCAAGAGCGAAATACAACGGCAGAAGGtgcaggaggaggtggagaagcagAGGAGGAGGTGCGAGGAGCTGCAGGCCCAGGTATTGCATCTACAGATGGAGAATCAGGAGTTACAGAGCTGCCTGAGGGGCAACCATGTCCAGGAAGACCGTGTCCAACGGCAGGAGCGGGAGGTGATGCTGAAACTGAAGGAGGTGGTTGACAAGCAGAGAGATGAGTTGAGAGCCAAAGTACAGCAGATAGGAAGCGTGTCTAAGGAGGTGGAGGCGCTGCAGGAGCAGTTGGAGCGCTTCATGAAGATGAATGGGGAGCTGAGACACAAGCAGAGCATCGTCACGGCCCAGGTGAAGAATGCTGTGGAGAGGAAGGCTGACATGGAGGCAGAcctcagagagaaacagaaagagatagAACGCCTCACCACCCAGCTGGAAAAGGCCAACACTGCTGCTGGCACGGCCAATCCGTGTAAGACCGAAGTGGACCTGACTGACAAGCTGGTGATAGACCTGAAGGATCCCAACAGACCCTGTTTCACCAAGCAGGAGGTCAGAGAGATGCTGACAGAGAGGAACGAGCTCAAAGCCAACCTGTTCCTGGTGCAGGAGGAACTCTCCTACTACCAGAGGGAGATCCTGAATGATGAGCGGTGTCCAGGCTTCTTGCTGGACGCTGTACGTTCTGCCATAAAGAAACagaaaactgtcatcaaggccaagATGTTGGGCATGCCAGAGGACGAATGCAGCAgTGATGAGGAGAAAGGACCCTTGtttgagaggagagcagagacagaAACCGGGACAGACAGCACTGACAGCAAACCACAAGAGTCTCGCATCAGGAACCTCTTTGGCTTCCTGACCCGCTCCGGCAGCAACCACAGCAGCCGTAGTCCCGGTGAAAACAACGCTGCTTCTTCCTGGGAAATCATCGACGACACTGACAACACTGCGGAGACAGAACCCCGACAATCACCATGACACCCCTCAACACCCGTCCAACTACACTTGTCCTCCATTCTGTTCAGTATCACAGGATGTTGTCATACTGGTTAGGTCTCCACAGCAGCCCTAAGAAAGGAAGAGCATTCTCTCATGCCTTCCTTCTTCATGTGTTATTACCCCCTTGTCCTTGCTCTGTAtacctttctcttcctctctctctttctcttcctctctctctttctcttcctctctctctttctcttcctctctctctttcttttcctctttctcttcctctctctctcttcctctctctctttctatctctttctcttcctctctctctttctctctctttctctttctcttcctctctctctttctctttctctctctttctctccctctgtttctctcaggAATAGGTTCAGAATGGTGAAATGGCCAACTGTACACTTTGCATTGACAGTAACTGTGCAGGACATTATTATGAGGGACTTTTTTTTAATGGATAATGCTTTTGTAATTGTTTTAGTATTTGTATTCAACATTATAGTGATGTGTATGGTATGTAACCATCTACAACAAATCTCTGTTGAATCTCTGAAGCAAATTTGTATTGAGATATTTTAACAAATATTTTTAGCCAAAGATACCAAGATATATTTTGAACACAGCAATCATTAGTCATTGCAGGAACACGTTTGTGCCACAGAGGGAATTCCAACTATTAACAACCATGGTGGACTTCCATGTGTTGAACATTTTACCTAGTGTGGGTGTTTTTGGTGTGCTTTGTGGTTGCTGTAATTCTTACAATCTGTCACTGTCTTGGACATGGTGTGAGTTATAGGAAACGTTTTGCAGTAAAGTATACTGTGTGTTACTTCTGAGCCTGAATGTATTGCCACAGAGTAACAGTCATTTATTGATTCGACTTTATATTCTTAACCATCAGCTCATCTTACATTTTTGATAGAGTCCTGTTATGAGTTCAACCATGTCTTCCCTAAGACCATGAATTGAGCATTGGGGTTGGTTGTTATGCATGTGGCTGCCAAGTGTGCGTGTGCacacctgtctctgtgtgtgtgtgtgtgcgtgcgtgcgtgcgttcgttCACTGGGGCACCAGCCCCTGTAAGTTAGTTGCTGCACTTACAGAGGAAATGTGTGTTTCCTTGGGGGTAAAtgggagatggtgtgtgtgtgccgtcACTATCCTTCCATCTGACCATGTCGTTAAACAaacgcacacagaaacacacacctacAACAATGGCTGCCCCTGCCCACTACCATAACTTATCGGTACTCAGACATCTGACTCGGACGTAGTTTTCTGACATTCTAAATGAATGCTGCTGGTGATTGTGTTGAATGATGTATTTTCCTACAAACTATGTACATGTTATTTTTGTAAGCATGACTATTTTTAAACGGAGAAGCCTCTGAGCTACAAAAACCAAATAAATATCTGAATTTAAA
>XM_021587825.2
TTTTATTTGAATTGGGCCTCATATTATTGTTCTAGACTAGGGTTAGGTAAAATGTGTGACGTATACTCGAATGAGGTTCAAGTTTGAACGGGTTTGTTCTAGTCTCTGACCAAGCATGCAGAGTCAAGTTCGAGCATAGGGTGACGATTTGACGAATGCATTAAGTTTAGATGCAGCAGCATATCGCGCTGTTTATTGCGAGAACACTTTCGATTTAATTGTGTTTCGACTCTTTCACCGGGGAACTGTCATGTCACCGTGAGAACGACGTTCTTTTTATTTCTGGGTTTCGATAGTAAAACTTGTGCACTTGCACACTTGTGCAATAATGGAGAAGGATTTTGATAGAAACGATCAAAAGCAAGACGTCAAGAAGACAGAGGTGTGTTTTGAAAGGACATGTTCAGCACTAACTGTGGACGATGTATACGAAATAGCTAAATTGATTGGCTCGGAAGTGGAAACACTTATTGACGGCTACGGTAAAGAGAGCGCCACAGGACTGGTGCCTAAAATTGTCAAAGTTCTAGAACTTTTGGAGAGCTTCGCATCGCGGAACCATGCTCACAAGTCAAAAGAAGAAGAATTACTTAAAGCGTTCGAAACACTTAATGTACAGACACAGAAGAAGGCGAGAAATGTGAAAGAATGCGAAGAAAGCAAGAGCGAAATACAACGGAAGGtgcaggaggaggtggagaagcagAGGAGGAGGTGCGAGGAGCTGCAGGCCCAGGTATTGCATCTACAGATGGAGAATCAGGAGTTACAGAGCTGCCTGAGGGGCAACCATGTCCAGGAAGACCGTGTCCAACGGCAGGAGCGGGAGGTGATGCTGAAACTGAAGGAGGTGGTTGACAAGCAGAGAGATGAGTTGAGAGCCAAAGTACAGCAGATAGGAAGCGTGTCTAAGGAGGTGGAGGCGCTGCAGGAGCAGTTGGAGCGCTTCATGAAGATGAATGGGGAGCTGAGACACAAGCAGAGCATCGTCACGGCCCAGGTGAAGAATGCTGTGGAGAGGAAGGCTGACATGGAGGCAGAcctcagagagaaacagaaagagatagAACGCCTCACCACCCAGCTGGAAAAGGCCAACACTGCTGCTGGCACGGCCAATCCGTGTAAGACCGAAGTGGACCTGACTGACAAGCTGGTGATAGACCTGAAGGATCCCAACAGACCCTGTTTCACCAAGCAGGAGGTCAGAGAGATGCTGACAGAGAGGAACGAGCTCAAAGCCAACCTGTTCCTGGTGCAGGAGGAACTCTCCTACTACCAGAGGGAGATCCTGAATGATGAGCGGTGTCCAGGCTTCTTGCTGGACGCTGTACGTTCTGCCATAAAGAAACagaaaactgtcatcaaggccaagATGTTGGGCATGCCAGAGGACGAATGCAGCAgTGATGAGGAGAAAGGACCCTTGtttgagaggagagcagagacagaAACCGGGACAGACAGCACTGACAGCAAACCACAAGAGTCTCGCATCAGGAACCTCTTTGGCTTCCTGACCCGCTCCGGCAGCAACCACAGCAGCCGTAGTCCCGGTGAAAACAACGCTGCTTCTTCCTGGGAAATCATCGACGACACTGACAACACTGCGGAGACAGAACCCCGACAATCACCATGACACCCCTCAACACCCGTCCAACTACACTTGTCCTCCATTCTGTTCAGTATCACAGGATGTTGTCATACTGGTTAGGTCTCCACAGCAGCCCTAAGAAAGGAAGAGCATTCTCTCATGCCTTCCTTCTTCATGTGTTATTACCCCCTTGTCCTTGCTCTGTAtacctttctcttcctctctctctttctcttcctctctctctttctcttcctctctctctttctcttcctctctctctttcttttcctctttctcttcctctctctctcttcctctctctctttctatctctttctcttcctctctctctttctctctctttctctttctcttcctctctctctttctctttctctctctttctctccctctgtttctctcaggAATAGGTTCAGAATGGTGAAATGGCCAACTGTACACTTTGCATTGACAGTAACTGTGCAGGACATTATTATGAGGGACTTTTTTTTAATGGATAATGCTTTTGTAATTGTTTTAGTATTTGTATTCAACATTATAGTGATGTGTATGGTATGTAACCATCTACAACAAATCTCTGTTGAATCTCTGAAGCAAATTTGTATTGAGATATTTTAACAAATATTTTTAGCCAAAGATACCAAGATATATTTTGAACACAGCAATCATTAGTCATTGCAGGAACACGTTTGTGCCACAGAGGGAATTCCAACTATTAACAACCATGGTGGACTTCCATGTGTTGAACATTTTACCTAGTGTGGGTGTTTTTGGTGTGCTTTGTGGTTGCTGTAATTCTTACAATCTGTCACTGTCTTGGACATGGTGTGAGTTATAGGAAACGTTTTGCAGTAAAGTATACTGTGTGTTACTTCTGAGCCTGAATGTATTGCCACAGAGTAACAGTCATTTATTGATTCGACTTTATATTCTTAACCATCAGCTCATCTTACATTTTTGATAGAGTCCTGTTATGAGTTCAACCATGTCTTCCCTAAGACCATGAATTGAGCATTGGGGTTGGTTGTTATGCATGTGGCTGCCAAGTGTGCGTGTGCacacctgtctctgtgtgtgtgtgtgtgcgtgcgtgcgtgcgttcgttCACTGGGGCACCAGCCCCTGTAAGTTAGTTGCTGCACTTACAGAGGAAATGTGTGTTTCCTTGGGGGTAAAtgggagatggtgtgtgtgtgccgtcACTATCCTTCCATCTGACCATGTCGTTAAACAaacgcacacagaaacacacacctacAACAATGGCTGCCCCTGCCCACTACCATAACTTATCGGTACTCAGACATCTGACTCGGACGTAGTTTTCTGACATTCTAAATGAATGCTGCTGGTGATTGTGTTGAATGATGTATTTTCCTACAAACTATGTACATGTTATTTTTGTAAGCATGACTATTTTTAAACGGAGAAGCCTCTGAGCTACAAAAACCAAATAAATATCTGAATTTAAA

Function

NR:

description
RILP-like protein 1 isoform X2

GO: NA

KEGG:

id description
K20173 RILPL1; RILP-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587824.2 False 3094 mRNA 0.45 8 18770826 18789238
XM_021587825.2 True 3090 mRNA 0.45 8 18770827 18789238

Neighbor

gene id symbol gene type direction distance location
LOC110507678 LOC106612861 coding upstream 792 18747195 ~ 18770034 (+)
LOC118944759 NA coding upstream 392312 18369263 ~ 18378985 (+)
brip1 brip1 coding upstream 527600 18200796 ~ 18243226 (+)
LOC110507666 LOC106581002 coding upstream 956331 17786275 ~ 17814495 (+)
LOC110507114 LOC106581006 coding upstream 990435 17670454 ~ 17780391 (+)
LOC110507680 LOC106581030 coding downstream 314 18789552 ~ 18796852 (+)
sarm1 LOC106612856 coding downstream 15932 18805170 ~ 18820231 (+)
LOC110507684 LOC106581033 coding downstream 48994 18838232 ~ 18849272 (+)
LOC110507685 LOC106581023 coding downstream 72585 18861823 ~ 18884306 (+)
LOC110507687 LOC106612851 coding downstream 146303 18935541 ~ 18940039 (+)
G2059402 NA non-coding upstream 170652 18532495 ~ 18600174 (+)
G2059416 NA non-coding upstream 219218 18549765 ~ 18551608 (+)
G2059380 NA non-coding upstream 260897 18508219 ~ 18509929 (+)
G2059292 NA non-coding upstream 391116 18379063 ~ 18379710 (+)
G2059594 NA non-coding downstream 64328 18853566 ~ 18855198 (+)
G2059610 NA non-coding downstream 133848 18923086 ~ 18923594 (+)
G2059661 NA non-coding downstream 177084 18966322 ~ 18966840 (+)
LOC110507689 LOC106581036 non-coding downstream 200043 18956560 ~ 18991625 (+)
G2059717 NA non-coding downstream 304844 19094082 ~ 19094319 (+)
G2059435 NA other upstream 175984 18571099 ~ 18594842 (+)
G2057945 NA other upstream 894994 17873801 ~ 17875832 (+)
G2057804 NA other upstream 1184902 17583970 ~ 17585924 (+)
G2057788 NA other upstream 1204442 17555504 ~ 17566384 (+)
G2057561 NA other upstream 1554283 17213110 ~ 17219017 (+)
G2059714 NA other downstream 302709 19091947 ~ 19092272 (+)
G2059777 LOC106581039 other downstream 404219 19193457 ~ 19195184 (+)
LOC110507725 LOC106581066 other downstream 1269005 20058224 ~ 20059968 (+)
G2061226 NA other downstream 1516144 20305382 ~ 20306608 (+)
LOC110507744 p4ha3 other downstream 1915691 20697519 ~ 20708634 (+)

Expression


Co-expression Network