LOC110507680 (LOC106581030)


Basic Information

Item Value
gene id LOC110507680
gene name LOC106581030
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18789552 ~ 18796852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965816.1
TTGGACTGCTCAGTCAGGCTGGGCATACAACTACAAGACTAATGACTGAAGAGAGCTGGCTggggagaaagacagatagagacagggagagagaaacataaaGAGAAAGACTGCCTTCCATTGGCCTACAAGACCACAGAGCTGGACTAGGTAAAATAAAGTTAGAACGAGAGAGTggcgggagacagacagaggcagggagcgagagagaaacataaagagaaagagagaagacttAATTTTCCATTGTCCTCTTCTGGACTTGAGAAGAGTGACCGAAAGAGAAGAAAAGGAGAAAGGGATTTTCCTGTGAGTTGGACACGTTCTGAGACCTATTGTAGGCTGGTACCTGGTTGTGGGGTGGACATGGGCCAGTTTCTGACGGGTCTAGGACTACTGCTCTgctgttccctctcctcccctcagagaCTGGCTCCCTCAGGGAGAAACGTCTGCCAGGACCCCAGGAATCCTTCCACTCTTGTCTGTTGCACTGGATGGAGACATCAGAGAGAGGAGTGTACTTTACCTGTGTGTGATGGTGAGCAGGCCTGCCAGCAGGATGAGGTGTGTGTATACCCGGGCGTCTGTCGCTGTCGGCCTGGCTACTATGGAGCCCACTGCAAGACACGCTGCCCTCCAGAGTTCTGGGCCCCGGACTGCCGTGAGCTGTGCAAGTGCCACCCTCACGGGCGCTGTGACCCGATCACGGGCAAGTGTACGTGCCTTTCCAACCGCTGGGGGCCACTCTGCCAGAACACCTGCAAATGTGGCCGTCATGGACACTGCCACCCTGTACACGGCAACTGCACCTGCGACGAGGGCTGGTGGACACCCACCTGTGCCAAACAGTGCCAGTGCTACCCAGGCACCTCCACCTGCGACCCACTGACCGGCAGGTGTCAGTGTGCCCCGGGTTACTGGGGTCAGAAGTGCAGTCTTCGATGTAGCTGCTACACATCATCCTGCCAACAGAAGACGGGGGCGTGTGAGTGCCAGAACGGATGGTGGGGTCCGACGTGTGACCGCCACTGTAACTGTGACCTGGAGCACAGCGAGTGTAATGCCGTCAGCGGGGAGTGTGTATGTCAGCCTGGGTACAAGGGAGCCTTCTGTAACGAGCCGTGTGGACCTGGGGAGTATGGCAGCGGGTGTACACTGAGCTGTGGCCACTGTGAAGGAGGCCAGTCGTGCTCTGTGGTTGATGGTGTCTGTACGGCCTGTGAGCCTGGGTGGAATGGCACACACTGTGACCGGCTGTGCCCGCATGGTTACCATGGAAACTACTGCCAGGAGGCGTGCCCACGCTGCAGGAACGGTGAACCATGTGACCCCAGGACGGGGGCGTGTTCACGATGTGACCCAGGATGGACCgaacccagGTGTGACGAGCCATGCTCTAACAGGACATTCGGGGACGCCTGCCGCTCCCTGTGCAGCCCCTGTTTCCATGGCCACTGTGATCACGTGACAGGAAGTTGTGTCTGTGGGCCTGGGTTCCAGGGACGGAGTTGTAACATCACCTGTCCAGACCAGCTGTATGGCtttaactgttcctctgtctgtgacTGTGGAGAGGGAACCGCCTGTCACCCAGCAACGGGGGCGTGTCCATACAgtgGTCACAGGGCTCTGATCACTGGTTTCCTGGTCCCTCTGCTCTTGGTGCTGCTGGGTCtggtctgctgctgctgctgctgtggagGACCTACTGACGgcaaagacagGGTAGCAGTGGGTGACGGTGGTACCTCTGTCCGTATGAAGCATCATGTGTATAACGTCCTGGCCAACGTGAGCTCTGCTGTACCCTGTATCTCTGTCTGGTCCTCTGGGCTACCCAGAGTCACAGTGTCACACCACGACCCTGAGCTGACGTTCAACCACAGCTTCATAGAGCCTCCCTCCTCAGGCTGGGTGACGGAGGGATCCTTCTTCGACAGTGATGAGGAGACCGGAGAGGTGCTCTACTGTGTCCCCCCCAGAGAAgACATCCCTGCAGTTGCAGGCGGTGAGTTCCAGGAGTTCCAGCACGAGATGAGTTCTAAGTGTAATATGTTCCCCGACCCCTCTGCCTTCAGTATTAGTGCAGAAGACATGTCCCTCCCCTTTGGCATCCCCCGCACCTCCAGCAACGCCAAGTCCAAATGCCCCTCCGTCTCCTTCGCCGAAGGCACCAGGTTCAGTCCCAAGGAGCGCCGAGGCTCTGCCCAAGATTTGACACCCGGGGCCCCCCGCACCAAACACAAGTCCCCCTGGGGGGTCCTGATGCTGTCAGCCCTCCAGGCCCAGGGAGGGAATGCCTCAGAGGGAgaagagacggaggggggggTGGATGGATGTGGAGGTGGGACTGGACCATTGGAAGACCCAGAATCCAGTGGTGAAGCAGGGGACCCCGATGTGGACAGGTGGACAGCTACCCCGACCCGAGCCATGTCTACCCTGCAGGTGCCTGGAGCAGTGGTAGGACGCACCATATCCAACGCTGCTGTTCCCAGAAAGGGAGGGCAAACACCAGGGTCCACATCAGATGGCCAGCAGGCAGAGATGGACAAAGTGACCACAGTGTATGTGACAGTGGGGAAGGCGGGGGTGGGGAGGCCCCTGTCTAAACTAGAGCTCCCCAGCTTGGAGGGCCCGGTACAGGCCATGCTACGCAGGCTAGGCAGCCTCCAGAGACACAAAGACCAGGAGGTGGGAACTAAGCCCAAGGGGAAGAGCCCGGGGACGGAGGGGATCACCAAGCCCCCCAGGAGGAAGCTGGGGACTAGGTCCAGTGTGTGGGAGCAGGGGGCTCCCCCACCCTCAGGGGTGGAGGGTGCTGTAGGGGAAGGCGTATCTATGAGAAAACCCAGTAGGAGGAAACAGCACGCCCACCATAGCTCCCCTGCTGTCATGGGAAACACTGACACTAACACTCAACCCCTACCAGAGGACAGCCCTGCCACCGTTACGCCCACGAGGCCCCTGTCCTCCATTTTGAAAAGCGTGCCAGAGGTCGCTGGGTCAAAGGTTAGGGGTGAAAGGTCAGGGGTAAGGCGAGAGAACGGCGACCCTGGGATGCAGACTGATAGTGGATATCGAACAATCGGGCCAGCTGGATTTGTAACGGACACTGTTAGTCTGAGTGAAGTCATCACAAATGAAGGAGTGGTGGCTGGTGTGGACGATGGACCTAACCTTTATGAGAACGTGATGATTATGCATTCCTAATTTCAGATGCAATAACTGTGGTGCTCTGTCTCTTCTCACAATTGAGTATGTAGTTCGACTACTAATGAATGAGGAATTTGGAAACTAGCCTACTGTACTGAGTTAACAGTCGAGTCTGACATAAACTAGCAATCTTTACAATATTGAGTAAACAATTTTATGAATTACAATATGTATATGATGGTTCTGTacaatatgtactgtatgtatgtatattataCAACAATATGATCATGTTGAAATCACCTTACCAAAAAGTAATTGACACTAACTGCCATGTGTGAAACAACTATGCAAATGAAAACCAAAAAATGCTCCTTGTTTACTTTGATTTGTCTGTCATCACTGGGATAGCATTGCTCTGTGGTGCAGCACCAACCCTTCCCAAACCATCACCTGTCTGTGATATGTATTATTCACTGGAACACTGAGGCTgtgtccctaaccctaaccctaaccctattccttttatagtggccatggtcaaaagtagtgcactattaaggaaacagggtgccatttgggatgcacactgaGTGAAACAAAAGAAGTGATGAAACCTGCCATGCATCTGATGTATTGTGGTGTCTGTCAGCTGCATTCCCAATATTGTAGGGTTGAGAGCATTTTGGTTGTATTGGGATTTACATATAAAAGAAAATAAGCCACCATAGACATATCTGTAGAGACTATATTCATCTCTATGGTGACCACTCCCCTTCTGCTTGTACAGGATTTAAGGAGGGGTTGACAGACAGGGTTAGAATGGACGATTGATGACTTGATCTTCTTTAATCTAATTTctgaatgttttttaaaaatcagCAGTGAGTCAACAAGTCCGGGCCGTGTACGCTGTGGAATTGAGTTGTAATGTAAAAGAATGCGGCGTCTCATTGGAACAGATATCCCCAGGCTACCTGGCATAGTCTACTATCAGGCTAGCATAGTCTGTGTACTATCTGTAGGTTTTGCCAAGCCTGTGTCCTCTTGATCACTGTTAAGCTTGCCTCCCACATAGCATGTCCTTCTATGCAGCCAAAAACAGTTTCATCATATTCCACTGAAAGCGCTAGTCAGGAAATGGAGACCTGGTGGCCCAGAGTTGTGTTTGTTGATGTCTTTGTAGCCTGTCATTCACTAGGTGttagtagtgtttctgtatcACACTGTCAGTCCCACCTTTAAAGACCCCTCTTGTAAACTGGGTCAGAtattagagaggagagataaCCCACATGTAAAATTATTACAGTTTACAATAGAAttcagtagtatactgtagaatactatactagaCACTGTGAAAgcctccacttctatgtcaaagatattAAAACAAAAACACCATAGTAAATACAACAataatgtccgcaaaaacactacagtaaatactaccgtATACTACAATACGCAAAAATACTAcattaattactatagtatatactacagttttCTTTCACTgcagtatttatactatagttaactgtaaatactacagtaattactatagtattcactgtagtgtttttgtggacttcaGATTGCACACCAACCAACCTGCTGAACTTTGCCCCAAATCATGGGGAACAGAGGGGGTGGGGAACAGAGATGGGTGGGCCTTCATTGATCTCCAATAAGGGGAGCTACAGCGCAAATACTACAAGTCCACTTTGACTGAATTGAGGCTTGGATTAATTTCAATACCCCCAATAACACGTGGGTACCCTTTACAGCTAGAAAATGTTTAATTATAAAAGTATTACACGCAAGTATTCCAGG
>XM_036965817.1
TTGGACTGCTCAGTCAGGCTGGGCATACAACTACAAGACTAATGACTGAAGAGAGCTGGCTggggagaaagacagatagagacagggagagagaaacataaaGAGAAAGACTGCCTTCCATTGGCCTACAAGACCACAGAGCTGGACTAGGTAAAATAAAGTTAGAACGAGAGAGTggcgggagacagacagaggcagggagcgagagagaaacataaagagaaagagagaagacttAATTTTCCATTGTCCTCTTCTGGACTTGAGAAGAGTGACCGAAAGAGAAGAAAAGGAGAAAGGGATTTTCCTGTGAGTTGGACACGTTCTGAGACCTATTGTAGGCTGGTACCTGGTTGTGGGGTGGACATGGGCCAGTTTCTGACGGGTCTAGGACTACTGCTCTgctgttccctctcctcccctcagagaCTGGCTCCCTCAGGGAGAAACGTCTGCCAGGACCCCAGGAATCCTTCCACTCTTGTCTGTTGCACTGGATGGAGACATCAGAGAGAGGAGTGTACTTTACCTGTGTGTGATGGTGAGCAGGCCTGCCAGCAGGATGAGGTGTGTGTATACCCGGGCGTCTGTCGCTGTCGGCCTGGCTACTATGGAGCCCACTGCAAGACACGCTGCCCTCCAGAGTTCTGGGCCCCGGACTGCCGTGAGCTGTGCAAGTGCCACCCTCACGGGCGCTGTGACCCGATCACGGGCAAGTGTACGTGCCTTTCCAACCGCTGGGGGCCACTCTGCCAGAACACCTGCAAATGTGGCCGTCATGGACACTGCCACCCTGTACACGGCAACTGCACCTGCGACGAGGGCTGGTGGACACCCACCTGTGCCAAACAGTGCCAGTGCTACCCAGGCACCTCCACCTGCGACCCACTGACCGGCAGGTGTCAGTGTGCCCCGGGTTACTGGGGTCAGAAGTGCAGTCTTCGATGTAGCTGCTACACATCATCCTGCCAACAGAAGACGGGGGCGTGTGAGTGCCAGAACGGATGGTGGGGTCCGACGTGTGACCGCCACTGTAACTGTGACCTGGAGCACAGCGAGTGTAATGCCGTCAGCGGGGAGTGTGTATGTCAGCCTGGGTACAAGGGAGCCTTCTGTAACGAGCCGTGTGGACCTGGGGAGTATGGCAGCGGGTGTACACTGAGCTGTGGCCACTGTGAAGGAGGCCAGTCGTGCTCTGTGGTTGATGGTGTCTGTACGGCCTGTGAGCCTGGGTGGAATGGCACACACTGTGACCGGCTGTGCCCGCATGGTTACCATGGAAACTACTGCCAGGAGGCGTGCCCACGCTGCAGGAACGGTGAACCATGTGACCCCAGGACGGGGGCGTGTTCACGATGTGACCCAGGATGGACCgaacccagGTGTGACGAGCCATGCTCTAACAGGACATTCGGGGACGCCTGCCGCTCCCTGTGCAGCCCCTGTTTCCATGGCCACTGTGATCACGTGACAGGAAGTTGTGTCTGTGGGCCTGGGTTCCAGGGACGGAGTTGTAACATCACCTGTCCAGACCAGCTGTATGGCtttaactgttcctctgtctgtgacTGTGGAGAGGGAACCGCCTGTCACCCAGCAACGGGGGCGTGTCCATACAgtgGTCACAGGGCTCTGATCACTGGTTTCCTGGTCCCTCTGCTCTTGGTGCTGCTGGGTCtggtctgctgctgctgctgctgtggagGACCTACTGACGgcaaagacagGGTAGCAGTGGGTGACGGTGGTACCTCTGTCCGTATGAAGCATCATGTGTATAACGTCCTGGCCAACGTGAGCTCTGCTGTACCCTGTATCTCTGTCTGGTCCTCTGGGCTACCCAGAGTCACAGTGTCACACCACGACCCTGAGCTGACGTTCAACCACAGCTTCATAGAGCCTCCCTCCTCAGGCTGGGTGACGGAGGGATCCTTCTTCGACAGTGATGAGGAGACCGGAGAGGTGCTCTACTGTGTCCCCCCCAGAGAAgACATCCCTGCAGTTGCAGGCGGTGAGTTCCAGGAGTTCCAGCACGAGATGAGTTCTAAGTGTAATATGTTCCCCGACCCCTCTGCCTTCAGTATTAGTGCAGAAGACATGTCCCTCCCCTTTGGCATCCCCCGCACCTCCAGCAACGCCAAGTCCAAATGCCCCTCCGTCTCCTTCGCCGAAGGCACCAGTCCCAAGGAGCGCCGAGGCTCTGCCCAAGATTTGACACCCGGGGCCCCCCGCACCAAACACAAGTCCCCCTGGGGGGTCCTGATGCTGTCAGCCCTCCAGGCCCAGGGAGGGAATGCCTCAGAGGGAgaagagacggaggggggggTGGATGGATGTGGAGGTGGGACTGGACCATTGGAAGACCCAGAATCCAGTGGTGAAGCAGGGGACCCCGATGTGGACAGGTGGACAGCTACCCCGACCCGAGCCATGTCTACCCTGCAGGTGCCTGGAGCAGTGGTAGGACGCACCATATCCAACGCTGCTGTTCCCAGAAAGGGAGGGCAAACACCAGGGTCCACATCAGATGGCCAGCAGGCAGAGATGGACAAAGTGACCACAGTGTATGTGACAGTGGGGAAGGCGGGGGTGGGGAGGCCCCTGTCTAAACTAGAGCTCCCCAGCTTGGAGGGCCCGGTACAGGCCATGCTACGCAGGCTAGGCAGCCTCCAGAGACACAAAGACCAGGAGGTGGGAACTAAGCCCAAGGGGAAGAGCCCGGGGACGGAGGGGATCACCAAGCCCCCCAGGAGGAAGCTGGGGACTAGGTCCAGTGTGTGGGAGCAGGGGGCTCCCCCACCCTCAGGGGTGGAGGGTGCTGTAGGGGAAGGCGTATCTATGAGAAAACCCAGTAGGAGGAAACAGCACGCCCACCATAGCTCCCCTGCTGTCATGGGAAACACTGACACTAACACTCAACCCCTACCAGAGGACAGCCCTGCCACCGTTACGCCCACGAGGCCCCTGTCCTCCATTTTGAAAAGCGTGCCAGAGGTCGCTGGGTCAAAGGTTAGGGGTGAAAGGTCAGGGGTAAGGCGAGAGAACGGCGACCCTGGGATGCAGACTGATAGTGGATATCGAACAATCGGGCCAGCTGGATTTGTAACGGACACTGTTAGTCTGAGTGAAGTCATCACAAATGAAGGAGTGGTGGCTGGTGTGGACGATGGACCTAACCTTTATGAGAACGTGATGATTATGCATTCCTAATTTCAGATGCAATAACTGTGGTGCTCTGTCTCTTCTCACAATTGAGTATGTAGTTCGACTACTAATGAATGAGGAATTTGGAAACTAGCCTACTGTACTGAGTTAACAGTCGAGTCTGACATAAACTAGCAATCTTTACAATATTGAGTAAACAATTTTATGAATTACAATATGTATATGATGGTTCTGTacaatatgtactgtatgtatgtatattataCAACAATATGATCATGTTGAAATCACCTTACCAAAAAGTAATTGACACTAACTGCCATGTGTGAAACAACTATGCAAATGAAAACCAAAAAATGCTCCTTGTTTACTTTGATTTGTCTGTCATCACTGGGATAGCATTGCTCTGTGGTGCAGCACCAACCCTTCCCAAACCATCACCTGTCTGTGATATGTATTATTCACTGGAACACTGAGGCTgtgtccctaaccctaaccctaaccctattccttttatagtggccatggtcaaaagtagtgcactattaaggaaacagggtgccatttgggatgcacactgaGTGAAACAAAAGAAGTGATGAAACCTGCCATGCATCTGATGTATTGTGGTGTCTGTCAGCTGCATTCCCAATATTGTAGGGTTGAGAGCATTTTGGTTGTATTGGGATTTACATATAAAAGAAAATAAGCCACCATAGACATATCTGTAGAGACTATATTCATCTCTATGGTGACCACTCCCCTTCTGCTTGTACAGGATTTAAGGAGGGGTTGACAGACAGGGTTAGAATGGACGATTGATGACTTGATCTTCTTTAATCTAATTTctgaatgttttttaaaaatcagCAGTGAGTCAACAAGTCCGGGCCGTGTACGCTGTGGAATTGAGTTGTAATGTAAAAGAATGCGGCGTCTCATTGGAACAGATATCCCCAGGCTACCTGGCATAGTCTACTATCAGGCTAGCATAGTCTGTGTACTATCTGTAGGTTTTGCCAAGCCTGTGTCCTCTTGATCACTGTTAAGCTTGCCTCCCACATAGCATGTCCTTCTATGCAGCCAAAAACAGTTTCATCATATTCCACTGAAAGCGCTAGTCAGGAAATGGAGACCTGGTGGCCCAGAGTTGTGTTTGTTGATGTCTTTGTAGCCTGTCATTCACTAGGTGttagtagtgtttctgtatcACACTGTCAGTCCCACCTTTAAAGACCCCTCTTGTAAACTGGGTCAGAtattagagaggagagataaCCCACATGTAAAATTATTACAGTTTACAATAGAAttcagtagtatactgtagaatactatactagaCACTGTGAAAgcctccacttctatgtcaaagatattAAAACAAAAACACCATAGTAAATACAACAataatgtccgcaaaaacactacagtaaatactaccgtATACTACAATACGCAAAAATACTAcattaattactatagtatatactacagttttCTTTCACTgcagtatttatactatagttaactgtaaatactacagtaattactatagtattcactgtagtgtttttgtggacttcaGATTGCACACCAACCAACCTGCTGAACTTTGCCCCAAATCATGGGGAACAGAGGGGGTGGGGAACAGAGATGGGTGGGCCTTCATTGATCTCCAATAAGGGGAGCTACAGCGCAAATACTACAAGTCCACTTTGACTGAATTGAGGCTTGGATTAATTTCAATACCCCCAATAACACGTGGGTACCCTTTACAGCTAGAAAATGTTTAATTATAAAAGTATTACACGCAAGTATTCCAGG

Function

NR:

description
scavenger receptor class F member 1-like

GO: NA

KEGG:

id description
K24318 SCARF1; scavenger receptor class F member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965816.1 False 4998 mRNA 0.51 13 18789552 18796852
XM_036965817.1 True 4992 mRNA 0.51 13 18789552 18796852

Neighbor

gene id symbol gene type direction distance location
LOC110507679 ripl1 coding upstream 314 18770826 ~ 18789238 (+)
LOC110507678 LOC106612861 coding upstream 19518 18747195 ~ 18770034 (+)
LOC118944759 NA coding upstream 411038 18369263 ~ 18378985 (+)
brip1 brip1 coding upstream 546326 18200796 ~ 18243226 (+)
LOC110507666 LOC106581002 coding upstream 975057 17786275 ~ 17814495 (+)
sarm1 LOC106612856 coding downstream 8318 18805170 ~ 18820231 (+)
LOC110507684 LOC106581033 coding downstream 41380 18838232 ~ 18849272 (+)
LOC110507685 LOC106581023 coding downstream 64971 18861823 ~ 18884306 (+)
LOC110507687 LOC106612851 coding downstream 138689 18935541 ~ 18940039 (+)
LOC110507689 LOC106581036 coding downstream 159708 18956560 ~ 18991625 (+)
G2059402 NA non-coding upstream 189378 18532495 ~ 18600174 (+)
G2059416 NA non-coding upstream 237944 18549765 ~ 18551608 (+)
G2059380 NA non-coding upstream 279623 18508219 ~ 18509929 (+)
G2059292 NA non-coding upstream 409842 18379063 ~ 18379710 (+)
G2059594 NA non-coding downstream 56714 18853566 ~ 18855198 (+)
G2059610 NA non-coding downstream 126234 18923086 ~ 18923594 (+)
G2059661 NA non-coding downstream 169470 18966322 ~ 18966840 (+)
G2059717 NA non-coding downstream 297230 19094082 ~ 19094319 (+)
G2059435 NA other upstream 194710 18571099 ~ 18594842 (+)
G2057945 NA other upstream 913720 17873801 ~ 17875832 (+)
G2057804 NA other upstream 1203628 17583970 ~ 17585924 (+)
G2057788 NA other upstream 1223168 17555504 ~ 17566384 (+)
G2057561 NA other upstream 1573009 17213110 ~ 17219017 (+)
G2059714 NA other downstream 295095 19091947 ~ 19092272 (+)
G2059777 LOC106581039 other downstream 396605 19193457 ~ 19195184 (+)
LOC110507725 LOC106581066 other downstream 1261391 20058224 ~ 20059968 (+)
G2061226 NA other downstream 1508530 20305382 ~ 20306608 (+)
LOC110507744 p4ha3 other downstream 1908077 20697519 ~ 20708634 (+)

Expression


Co-expression Network