LOC110507684 (LOC106581033)


Basic Information

Item Value
gene id LOC110507684
gene name LOC106581033
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18838232 ~ 18849272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965681.1
CTTTAAACAGCGTGGTAGCGTCCCCAATTATGTCGTAAAACCTTTGCACCCACACTCCGATTAGATGTTCTGTCTAATATAtctatctctcttctctgtgtacCTGAGCTACTCTCTGGATATCTGGACCAGCCATGGTGGTGTGTCTGACTGGGCTATGGAGGTATCGGAATTACCTGGTCATATTCCTCACCCCACTGTTGATTCTACCTCTACCCATAATAGTTGGGGGAccggAGGCTAGTTGTGGCTATGTGATCATCCTGACGGCCCTGTACTGGTGTACAGAGTGTATGCCCCTGGCTGTGACCGGTCTGCTGCCTGTCATCCTCTTCCCTATGATGGGCATTATGGAGTCAAGCGAGGTGTGTACCCAGTACATGAAGGACTCTAACATGCTGTTCGTCGGAGGGCTGTTGATGGCTACAGCTGTGGAACACTGGAACCTTCACAAACGCATCGCCCTCAGAGTACTGCTCCTAGTAGGGGTGAAGCCTGCCCTtCTGATGATGGGCTTCATGGGCACCACAGCCTTCCTGTCCATGTGGATCGGTAACACAGCCTCCACTGCCATGATGCTGCCCATCTCTAATGCTGTGCTGAAGCAGCTGTGTGACACCGAGGCCcaggcagaggagagggagatggaccTGATCTCCCTCAGGGGGGCCGGGCCCGGGACTGGGATACCTAAGGGCCAGGACAACCAAGCCTTTGATATGGGTGACAAGGAGAACAGTATTaccatatATGATGCATGTACTACCGAATGTACAAAGGATGTCAAGCCCATGAAGAATGGAATTCAGTTAGAGCCCGAGTCAGAGGTGGAGGAGAGTCCGGAGGCGAGGGAGAGGAGGCTAAAGAGGGAGGCTAAGTACCTGAAACTGGATAAAGGCATGAGTCTCAGTGTGTGTTACGCTGCCAGCATCGGAGGAACAGCCACCCTCACCGGCACCGCCCCGAACCTCATCCTCAAAGGACAGGTCGACGAACTGTTCCCAGGAAATGGAGACATCATCAACTTTGCCAGCTGGTTTGGTTTCTCCTTCCCCAACATGGTTCTGATGCTGATCATCTCCTGGCTGTGGCTGCAGTTTATGTACCTGGGCTGCAACATGAAGAAGTTGTTTGGCTGTGGAATGAATAAAGATGGTGACAAGGAGGCGTACGGGGTGATAAAGAATGAGTATAAGAAGCTGGGCAGTGTGTCCTTCGCTGAGGGCTGCATCCTGGTGCTGTTTGTCCTGCTGGTCCTGCTCTGGTTCACCAGAGAACCAGGCTTCATGCCCGGCTGGGCCGCTGTGCTCTTCAACAAGGACAAACCGTATGTCACTGATGGCACAGTGGCCATGCTGATGTCAACGCTGTTCTTTGTGATCCCATCCCAACTACCCAGATGTGGCGGGTACTCTGaggatgGAAAGCCCCTGAAGGCCCCTCCCACCCTGCTCAATTGGGACGTGGTCCATAAGAAGATGCCTTGGAACATTCTCCTGCTAGTGGGAGGAGGCTTCGCTCTGGCCCGGGGCAGCGAGACGTCTGGTCTGTCTCAGTGGCTAGGAGAAAGTCTGGCCCCCCTGCAGTCCATCCCTCCCGTTGCCatctctttcctcctgtctctactcaTCGCCACTTTCACTGAGTGCTCCAGCAACGTAGCTACTACCACATTGTTCCTGCCTATACTGGCCTCTATGgccgtaGCCATTAAGCTCCACCCGCTGTACGTCATGCTGCCCTGCACCATCTGTGCCTCGCTGGCCTTCATGTTGCCGGTGGCCACACCCCCTAACGCCATCGCCTTCTCCTATGGCAACCTCAAAGTCATGGACATGGCGAAGGCTGGATTCGTGCTGAACATTATTGGTGTCATCACCATCAACATCGCCCTGAACACCTGGGGAACAGCTATGTTCAATCTCAACACCTTCCCTGACTGGGCCAATGTTACCACCATACCCACCCCCTGATCTAGAGACACCAGAGAataaggaaggagggaaggaggaggaggaggaagagactggagggatgggaagaggggagagatgcTGTATGTACACCTCTATCTGGGGCAGGCTGTAAACAGAAGACAGTGCTGATGGTCAACCTACTCAGGGTGATCTAAAGCTGCTACTGTATACACACTTcatataacaacacacacagtatctgttTACGGGTTGGACTGGtactcctcctccactctgtcAAAGTTTTGATTGTTTTGAATtaaatcaatttaaatgaa
>XM_021587830.2
TTTAAACAGCGTGGTAGCGTCCCCAATTATGTCGTAAAACCTTTGCACCCACACTCCGATTAGATGTTCTGTCTAATATAtctatctctcttctctgtgtacCTGAGCTACTCTCTGGATATCTGGACCAGCCATGGTGGTGTGTCTGACTGGGCTATGGAGGTATCGGAATTACCTGGTCATATTCCTCACCCCACTGTTGATTCTACCTCTACCCATAATAGTTGGGGGAccggAGGCTAGTTGTGGCTATGTGATCATCCTGACGGCCCTGTACTGGTGTACAGAGTGTATGCCCCTGGCTGTGACCGGTCTGCTGCCTGTCATCCTCTTCCCTATGATGGGCATTATGGAGTCAAGCGAGGTGTGTACCCAGTACATGAAGGACTCTAACATGCTGTTCGTCGGAGGGCTGTTGATGGCTACAGCTGTGGAACACTGGAACCTTCACAAACGCATCGCCCTCAGAGTACTGCTCCTAGTAGGGGTGAAGCCTGCCCTtCTGATGATGGGCTTCATGGGCACCACAGCCTTCCTGTCCATGTGGATCGGTAACACAGCCTCCACTGCCATGATGCTGCCCATCTCTAATGCTGTGCTGAAGCAGCTGTGTGACACCGAGGCCcaggcagaggagagggagatggaccTGATCTCCCTCAGGGGGGCCGGGCCCGGGACTGGGATACCTAAGGGCCAGGACAACCAAGCCTTTGATATGGATGATGCATGTACTACCGAATGTACAAAGGATGTCAAGCCCATGAAGAATGGAATTCAGTTAGAGCCCGAGTCAGAGGTGGAGGAGAGTCCGGAGGCGAGGGAGAGGAGGCTAAAGAGGGAGGCTAAGTACCTGAAACTGGATAAAGGCATGAGTCTCAGTGTGTGTTACGCTGCCAGCATCGGAGGAACAGCCACCCTCACCGGCACCGCCCCGAACCTCATCCTCAAAGGACAGGTCGACGAACTGTTCCCAGGAAATGGAGACATCATCAACTTTGCCAGCTGGTTTGGTTTCTCCTTCCCCAACATGGTTCTGATGCTGATCATCTCCTGGCTGTGGCTGCAGTTTATGTACCTGGGCTGCAACATGAAGAAGTTGTTTGGCTGTGGAATGAATAAAGATGGTGACAAGGAGGCGTACGGGGTGATAAAGAATGAGTATAAGAAGCTGGGCAGTGTGTCCTTCGCTGAGGGCTGCATCCTGGTGCTGTTTGTCCTGCTGGTCCTGCTCTGGTTCACCAGAGAACCAGGCTTCATGCCCGGCTGGGCCGCTGTGCTCTTCAACAAGGACAAACCGTATGTCACTGATGGCACAGTGGCCATGCTGATGTCAACGCTGTTCTTTGTGATCCCATCCCAACTACCCAGATGTGGCGGGTACTCTGaggatgGAAAGCCCCTGAAGGCCCCTCCCACCCTGCTCAATTGGGACGTGGTCCATAAGAAGATGCCTTGGAACATTCTCCTGCTAGTGGGAGGAGGCTTCGCTCTGGCCCGGGGCAGCGAGACGTCTGGTCTGTCTCAGTGGCTAGGAGAAAGTCTGGCCCCCCTGCAGTCCATCCCTCCCGTTGCCatctctttcctcctgtctctactcaTCGCCACTTTCACTGAGTGCTCCAGCAACGTAGCTACTACCACATTGTTCCTGCCTATACTGGCCTCTATGgccgtaGCCATTAAGCTCCACCCGCTGTACGTCATGCTGCCCTGCACCATCTGTGCCTCGCTGGCCTTCATGTTGCCGGTGGCCACACCCCCTAACGCCATCGCCTTCTCCTATGGCAACCTCAAAGTCATGGACATGGCGAAGGCTGGATTCGTGCTGAACATTATTGGTGTCATCACCATCAACATCGCCCTGAACACCTGGGGAACAGCTATGTTCAATCTCAACACCTTCCCTGACTGGGCCAATGTTACCACCATACCCACCCCCTGATCTAGAGACACCAGAGAataaggaaggagggaaggaggaggaggaggaagagactggagggatgggaagaggggagagatgcTGTATGTACACCTCTATCTGGGGCAGGCTGTAAACAGAAGACAGTGCTGATGGTCAACCTACTCAGGGTGATCTAAAGCTGCTACTGTATACACACTTcatataacaacacacacagtatctgttTACGGGTTGGACTGGtactcctcctccactctgtcAAAGTTTTGATTGTTTTGAATtaaatcaatttaaatgaa

Function

NR:

description
solute carrier family 13 member 2-like

GO: NA

KEGG:

id description
K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965681.1 False 2254 mRNA 0.53 13 18838232 18849272
XM_021587830.2 True 2226 mRNA 0.53 13 18838233 18849272

Neighbor

gene id symbol gene type direction distance location
sarm1 LOC106612856 coding upstream 18001 18805170 ~ 18820231 (+)
LOC110507680 LOC106581030 coding upstream 41380 18789552 ~ 18796852 (+)
LOC110507679 ripl1 coding upstream 48994 18770826 ~ 18789238 (+)
LOC110507678 LOC106612861 coding upstream 68198 18747195 ~ 18770034 (+)
LOC118944759 NA coding upstream 459718 18369263 ~ 18378985 (+)
LOC110507685 LOC106581023 coding downstream 12551 18861823 ~ 18884306 (+)
LOC110507687 LOC106612851 coding downstream 86269 18935541 ~ 18940039 (+)
LOC110507689 LOC106581036 coding downstream 107288 18956560 ~ 18991625 (+)
LOC110507690 gosr1 coding downstream 143002 18992274 ~ 19047785 (+)
LOC110507699 LOC106581044 coding downstream 499498 19348770 ~ 19383505 (+)
G2059402 NA non-coding upstream 238058 18532495 ~ 18600174 (+)
G2059416 NA non-coding upstream 286624 18549765 ~ 18551608 (+)
G2059380 NA non-coding upstream 328303 18508219 ~ 18509929 (+)
G2059292 NA non-coding upstream 458522 18379063 ~ 18379710 (+)
G2059594 NA non-coding downstream 4294 18853566 ~ 18855198 (+)
G2059610 NA non-coding downstream 73814 18923086 ~ 18923594 (+)
G2059661 NA non-coding downstream 117050 18966322 ~ 18966840 (+)
G2059717 NA non-coding downstream 244810 19094082 ~ 19094319 (+)
G2059435 NA other upstream 243390 18571099 ~ 18594842 (+)
G2057945 NA other upstream 962400 17873801 ~ 17875832 (+)
G2057804 NA other upstream 1252308 17583970 ~ 17585924 (+)
G2057788 NA other upstream 1271848 17555504 ~ 17566384 (+)
G2057561 NA other upstream 1621689 17213110 ~ 17219017 (+)
G2059714 NA other downstream 242675 19091947 ~ 19092272 (+)
G2059777 LOC106581039 other downstream 344185 19193457 ~ 19195184 (+)
LOC110507725 LOC106581066 other downstream 1208971 20058224 ~ 20059968 (+)
G2061226 NA other downstream 1456110 20305382 ~ 20306608 (+)
LOC110507744 p4ha3 other downstream 1855657 20697519 ~ 20708634 (+)

Expression


Co-expression Network