LOC110507687 (LOC106612851)


Basic Information

Item Value
gene id LOC110507687
gene name LOC106612851
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18935541 ~ 18940039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587835.2
AATCGTGTCATGGGTTAGGGGTAGGGCTATGACCAGGACTGGGTGTAGTCTATGCCTGTATAATCACGGAGTCTGGACGCTTGTGTTAATCGGCACTGGGCACGGTGCCCTGCATCCAGACCACACCATGGCAGGCGGGGGAGAGCCTAAAGCCCTGTGGCTCAGTATGGAACAATGGAGGCCCCAGCAATGTGCTGACTCCTACCCCGTCCCACAGGCCTGGGCTCCATTTACCACCACTGTGTATAAATAGGCCCGTTTACTCAGGGGTCAGGACATCGTTTTGTGGAGCCCCCCGTGAGCGCTACACAGCAATTTTTTGGGGTAGGTCAGGTCAATTATTACTGAGATATCAAACATGGCGCTGACTACTCCTAACCCAGTGGGACCATGGAAGATCACTGTCTACGACCAGGAGAACTTCCAGGGAAAGCGTATGGAGTTCACTGCTTCCTGCCAGAACATCATGGAGTGTGGTGTGGACAACATCCGCTCCCTGAAGGTCGAGTGTGGAGCCTGGGTAGGGTACGAGCACTCCAGCTTCTCCGGGCAGCAGTTTGTGTTGGAGCGTGGAGAGTACCCTCGCTGGGAGTCCTGGAGCGGCAGCAACGCCTACCACATCGAAAGGTTGATGTCCTTCCGCCCAGTCTGCTCTGCTAACCATAAGGAGTCCAAGATTGTGGTGTTTGAAAGGGAGAACTTCATTGGCAAGCAGTGGGAGATGAACGATGACTACCCCTCCCTGCAGGCCATGGGCTGGGGCAACAACGAGATCGGATCCATGCAGGTCCAGAGTGGAGCCTGGGTGTGCTACCAGTTCCCCGGTTATCGTGGCTACCAGTACATCATGGAGTGCGACCGTCATGGCGGAGAGTACAAACACTACAGGGAGTGGGGCTCCCATGCTCAGACCTTCCAGGTCCAGTCTCTGCGTCGCATCCAGCAGTGAGAGCGTGCACAGCCTCCTCCCTTtcacccctcctcttcctcctttccccTCATCCCTCATTCGCCCTATCATTTCAAGCTTGACCAGAAGTCCTGTTAGACCTCCAAGACCGACGGCTCCTGAAGCTTCTGGTGCTCCACAGCGACAAACATGTTTACAGCACTTTTGTTTTGTTCCATCGCCAAAAGAAGAAAAACGAGAGAACGAAAGAGTAAGATAGAAAAGTGACAGGTGCATCCCACATCAAGCGGAGTGAAGGGTCTCGGGTGATGTGGTACAACCCAGGCTTTGATGCtgttcttcagtgttgtcacggGGAATTCACAGCCACAGTGATCAATaaagagaaaatgagaaaaaaataaacagCGATACAAGAGTCTGCTATTAACCTG
>XM_021587836.2
TCATGGGTTAGGGGTAGGGCTATGACCAGGACTGGGTGTAGTCTATGCCTGTATAATCACGGAGTCTGGACGCTTGTGTTAATCGGCACTGGGCACGGTGCCCTGCATCCAGACCACACCATGGCAGGCGGGGGAGAGCCTAAAGCCCTGTGGCTCAGTATGGAACAATGGAGGCCCCAGCAATGTGCTGACTCCTACCCCGTCCCACAGGCCTGGGCTCCATTTACCACCACTGTGTATAAATAGGCCCGTTTACTCAGGGGTCAGGACATCGTTTTGTGGAGCCCCCCGTGAGCGCTACACAGCAATTTTTTGGGGTCAATTATTACTGAGATATCAAACATGGCGCTGACTACTCCTAACCCAGTGGGACCATGGAAGATCACTGTCTACGACCAGGAGAACTTCCAGGGAAAGCGTATGGAGTTCACTGCTTCCTGCCAGAACATCATGGAGTGTGGTGTGGACAACATCCGCTCCCTGAAGGTCGAGTGTGGAGCCTGGGTAGGGTACGAGCACTCCAGCTTCTCCGGGCAGCAGTTTGTGTTGGAGCGTGGAGAGTACCCTCGCTGGGAGTCCTGGAGCGGCAGCAACGCCTACCACATCGAAAGGTTGATGTCCTTCCGCCCAGTCTGCTCTGCTAACCATAAGGAGTCCAAGATTGTGGTGTTTGAAAGGGAGAACTTCATTGGCAAGCAGTGGGAGATGAACGATGACTACCCCTCCCTGCAGGCCATGGGCTGGGGCAACAACGAGATCGGATCCATGCAGGTCCAGAGTGGAGCCTGGGTGTGCTACCAGTTCCCCGGTTATCGTGGCTACCAGTACATCATGGAGTGCGACCGTCATGGCGGAGAGTACAAACACTACAGGGAGTGGGGCTCCCATGCTCAGACCTTCCAGGTCCAGTCTCTGCGTCGCATCCAGCAGTGAGAGCGTGCACAGCCTCCTCCCTTtcacccctcctcttcctcctttccccTCATCCCTCATTCGCCCTATCATTTCAAGCTTGACCAGAAGTCCTGTTAGACCTCCAAGACCGACGGCTCCTGAAGCTTCTGGTGCTCCACAGCGACAAACATGTTTACAGCACTTTTGTTTTGTTCCATCGCCAAAAGAAGAAAAACGAGAGAACGAAAGAGTAAGATAGAAAAGTGACAGGTGCATCCCACATCAAGCGGAGTGAAGGGTCTCGGGTGATGTGGTACAACCCAGGCTTTGATGCtgttcttcagtgttgtcacggGGAATTCACAGCCACAGTGATCAATaaagagaaaatgagaaaaaaataaacagCGATACAAGAGTCTGCTATTAACCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587835.2 False 1344 mRNA 0.53 6 18935541 18940039
XM_021587836.2 True 1328 mRNA 0.53 6 18935548 18940039

Neighbor

gene id symbol gene type direction distance location
LOC110507685 LOC106581023 coding upstream 51235 18861823 ~ 18884306 (+)
LOC110507684 LOC106581033 coding upstream 86269 18838232 ~ 18849272 (+)
sarm1 LOC106612856 coding upstream 115310 18805170 ~ 18820231 (+)
LOC110507680 LOC106581030 coding upstream 138689 18789552 ~ 18796852 (+)
LOC110507679 ripl1 coding upstream 146303 18770826 ~ 18789238 (+)
LOC110507689 LOC106581036 coding downstream 16521 18956560 ~ 18991625 (+)
LOC110507690 gosr1 coding downstream 52235 18992274 ~ 19047785 (+)
LOC110507699 LOC106581044 coding downstream 408731 19348770 ~ 19383505 (+)
LOC110507698 LOC106581045 coding downstream 453578 19393617 ~ 19407557 (+)
LOC110507701 LOC106581046 coding downstream 472632 19412671 ~ 19439667 (+)
G2059610 NA non-coding upstream 11947 18923086 ~ 18923594 (+)
G2059594 NA non-coding upstream 80343 18853566 ~ 18855198 (+)
G2059402 NA non-coding upstream 335367 18532495 ~ 18600174 (+)
G2059416 NA non-coding upstream 383933 18549765 ~ 18551608 (+)
G2059380 NA non-coding upstream 425612 18508219 ~ 18509929 (+)
G2059661 NA non-coding downstream 26283 18966322 ~ 18966840 (+)
G2059717 NA non-coding downstream 154043 19094082 ~ 19094319 (+)
G2059719 NA non-coding downstream 155659 19095698 ~ 19095944 (+)
G2059722 NA non-coding downstream 158450 19098489 ~ 19099017 (+)
G2059435 NA other upstream 340699 18571099 ~ 18594842 (+)
G2057945 NA other upstream 1059709 17873801 ~ 17875832 (+)
G2057804 NA other upstream 1349617 17583970 ~ 17585924 (+)
G2057788 NA other upstream 1369157 17555504 ~ 17566384 (+)
G2057561 NA other upstream 1718998 17213110 ~ 17219017 (+)
G2059714 NA other downstream 151908 19091947 ~ 19092272 (+)
G2059777 LOC106581039 other downstream 253418 19193457 ~ 19195184 (+)
LOC110507725 LOC106581066 other downstream 1118204 20058224 ~ 20059968 (+)
G2061226 NA other downstream 1365343 20305382 ~ 20306608 (+)
LOC110507744 p4ha3 other downstream 1764890 20697519 ~ 20708634 (+)

Expression


Co-expression Network