LOC110507690 (gosr1)


Basic Information

Item Value
gene id LOC110507690
gene name gosr1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18992274 ~ 19047785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965413.1
GTTGGACAAAAATGGCAGGAGGAAGCAGCAACTACTGGGAAGATTTGCGAAAGCAGGCCAGGCAGCTGGAGAATGAGCTGGATCTGAAGCTGGTGTCCTTCAGTAAACTGTGTACTAGCTACAGCAGCTCCAGAGATGGCCGTCGAGGAGACAGCAACTCGGATACTACTCCCCTCCTCAACAACTCGACACAGGATAGAATGTTTGAGACCATGTCTGTGGAGATTGAACAGCTGCTGGCCAAACTCACGGGTGTGAACGACAAGATGGCGGAGTACACCAGCACCCCAGGGGTGACGTCCCTCAACGCAGCCCTGATGCACACGctccagagacacagagacattctGCAGGACTACACTCACGAATCCCACAAAACCAAAGCCAACTTCCTTGCCATCCGGGAGAGAGAAGATTTGCTGGGGTCTGTCCGGAAAGACATTGAGACATACAAGAGTGGTTCAGGAGTAAACAACAGAAGAACAGAACTGTTTCTGAAGGAGCATGAACACCTGAGAAACTCAGATCGGCTGATGGATGACACAATAAGCCCACCCACAGATTGCTGCCGGAGGGGAGGCTACTGGCACAGGTGCTTCATTAAGTGGATTTGTGGGCCGTGCAGCACCTCTTCCTGTCCAGCTCCTCTTCCTGTCCAGCCCCCCCTCACCCACCcgagtctccctctctcttccctcttgtTTTAGCCAAGCAGAAAATTACACTGGATGAGAAAGCCACGGTCATTACCGGTTCCCTCCCTGTCTTGAACACGCCTAACAAGACACATCCACGCACACAGCCAGAAGATAATGAAGCGTATTTTTTCTCCTGATTAgtttttgtgtgttattatgcCCTGTGGGGACGAGGAGGGTTGAGCTATGATTCATTTATGTGAATTAATATGCATTGGGCTTTAAGACCCAGGTTGGAAATAAAAATCGACAATGTTTTGAGAGGAACAGTTGGGACTCCAGTGACCAAAGCAGAAAGAAAAGAGTGTGATTTTCACAGCACAGAAATGCTGTTTTTGGTAGTTAAAGTAACATATCCATATTAAGCTCTGTAAAATTGGGGTTAGACTGGAGAGAATTGGTCTCAATAAACGTATCTAGAAACCC
>XM_021587842.2
GGACAAAAATGGCAGGAGGAAGCAGCAACTACTGGGAAGATTTGCGAAAGCAGGCCAGGCAGCTGGAGAATGAGCTGGATCTGAAGCTGGTGTCCTTCAGTAAACTGTGTACTAGCTACAGCAGCTCCAGAGATGGCCGTCGAGGAGACAGCAACTCGGATACTACTCCCCTCCTCAACAACTCGACACAGGATAGAATGTTTGAGACCATGTCTGTGGAGATTGAACAGCTGCTGGCCAAACTCACGGGTGTGAACGACAAGATGGCGGAGTACACCAGCACCCCAGGGGTGACGTCCCTCAACGCAGCCCTGATGCACACGctccagagacacagagacattctGCAGGACTACACTCACGAATCCCACAAAACCAAAGCCAACTTCCTTGCCATCCGGGAGAGAGAAGATTTGCTGGGGTCTGTCCGGAAAGACATTGAGACATACAAGAGTGGTTCAGGAGTAAACAACAGAAGAACAGAACTGTTTCTGAAGGAGCATGAACACCTGAGAAACTCAGATCGGCTGATGGATGACACAATAAGTATTGCCATGGCGACCAAGGAGAACATGACATCCCAGAGAGGGCTGTTGAAGTCCATACACAGCAGGGTCAACACTCTGGCCAATCGTTTCCCAGCCATCAACAACCTCATCCAGCGAATCAACCTGCGGAAGAGGCGGGACTCCCTAATCCTGGGTGCAGTCATCGGTGTCTGCACCATCCTCCTGCTGCTCTACGCCTTCCACTGATGACGGACAGACCGGTCGAACAATCGTTACTCTGCGCTTGTAACATCGGAATCAGGACTCTGGAGAATGGGCTTGAGTGATTGGAGGCTACTGAGTAGACGGACAGATAGACCGACAACCTTTTGGCCCAATCGGTTAACAGGATTGATCAAAGCCATCATGGACTACCTGATTTGTATTTAGCAGTGAGGGAAgaaggagatggggagatggagcagcatctttttgtttagtttttctATCAAAAGTGAATGTGCTGTTCAACTCTGGTTAAGGGAACGGAGACCAAATTTACTAATATGACTAGATTTTAAAGAATTATATATAAAGAACACTTGCTTCAATGAGGAGTTAAAGGCTCTGAAGACAGATTGCGGATGCGAAAGAGGGGGACTGTTTTGCTGTTGATTTCTGAGGTGGATGGATTTTTAGTTGAATGGTCGTTTTTTAGTGGCGGGAGATTCAGGAGGTTTATCATCATGAGCTGTACAATGTGCATTATTAATAAAttattaatatacagtatgtga
>XM_021587843.2
CAGGAGGAAGCAGCAACTACTGGGAAGGTGAGGTGGCAAACTGGCACAACTAGGGTGCGATCAGACAGTCATTGGATACATTTACAACGATGTTTGATTTGCGAAAGCAGGCCAGGCAGCTGGAGAATGAGCTGGATCTGAAGCTGGTGTCCTTCAGTAAACTGTGTACTAGCTACAGCAGCTCCAGAGATGGCCGTCGAGGAGACAGCAACTCGGATACTACTCCCCTCCTCAACAACTCGACACAGGATAGAATGTTTGAGACCATGTCTGTGGAGATTGAACAGCTGCTGGCCAAACTCACGGGTGTGAACGACAAGATGGCGGAGTACACCAGCACCCCAGGGGTGACGTCCCTCAACGCAGCCCTGATGCACACGctccagagacacagagacattctGCAGGACTACACTCACGAATCCCACAAAACCAAAGCCAACTTCCTTGCCATCCGGGAGAGAGAAGATTTGCTGGGGTCTGTCCGGAAAGACATTGAGACATACAAGAGTGGTTCAGGAGTAAACAACAGAAGAACAGAACTGTTTCTGAAGGAGCATGAACACCTGAGAAACTCAGATCGGCTGATGGATGACACAATAAGTATTGCCATGGCGACCAAGGAGAACATGACATCCCAGAGAGGGCTGTTGAAGTCCATACACAGCAGGGTCAACACTCTGGCCAATCGTTTCCCAGCCATCAACAACCTCATCCAGCGAATCAACCTGCGGAAGAGGCGGGACTCCCTAATCCTGGGTGCAGTCATCGGTGTCTGCACCATCCTCCTGCTGCTCTACGCCTTCCACTGATGACGGACAGACCGGTCGAACAATCGTTACTCTGCGCTTGTAACATCGGAATCAGGACTCTGGAGAATGGGCTTGAGTGATTGGAGGCTACTGAGTAGACGGACAGATAGACCGACAACCTTTTGGCCCAATCGGTTAACAGGATTGATCAAAGCCATCATGGACTACCTGATTTGTATTTAGCAGTGAGGGAAgaaggagatggggagatggagcagcatctttttgtttagtttttctATCAAAAGTGAATGTGCTGTTCAACTCTGGTTAAGGGAACGGAGACCAAATTTACTAATATGACTAGATTTTAAAGAATTATATATAAAGAACACTTGCTTCAATGAGGAGTTAAAGGCTCTGAAGACAGATTGCGGATGCGAAAGAGGGGGACTGTTTTGCTGTTGATTTCTGAGGTGGATGGATTTTTAGTTGAATGGTCGTTTTTTAGTGGCGGGAGATTCAGGAGGTTTATCATCATGAGCTGTACAATGTGCATTATTAATAAAttattaatatacagt
>XM_036965414.1
TATAACGGTGTTTACAGGCCAAAAGTGTTGTCAAATTTGGAGCAAATCGTCATGCTGTTGGGTTGGGTGGCCTGTCTAAGAgcccagttagctagctagcaaaacaaGCTTTTGCTAGCAAGTGAAACGTTCACCGATATTTGCGAAAGCAGGCCAGGCAGCTGGAGAATGAGCTGGATCTGAAGCTGGTGTCCTTCAGTAAACTGTGTACTAGCTACAGCAGCTCCAGAGATGGCCGTCGAGGAGACAGCAACTCGGATACTACTCCCCTCCTCAACAACTCGACACAGGATAGAATGTTTGAGACCATGTCTGTGGAGATTGAACAGCTGCTGGCCAAACTCACGGGTGTGAACGACAAGATGGCGGAGTACACCAGCACCCCAGGGGTGACGTCCCTCAACGCAGCCCTGATGCACACGctccagagacacagagacattctGCAGGACTACACTCACGAATCCCACAAAACCAAAGCCAACTTCCTTGCCATCCGGGAGAGAGAAGATTTGCTGGGGTCTGTCCGGAAAGACATTGAGACATACAAGAGTGGTTCAGGAGTAAACAACAGAAGAACAGAACTGTTTCTGAAGGAGCATGAACACCTGAGAAACTCAGATCGGCTGATGGATGACACAATAAGTATTGCCATGGCGACCAAGGAGAACATGACATCCCAGAGAGGGCTGTTGAAGTCCATACACAGCAGGGTCAACACTCTGGCCAATCGTTTCCCAGCCATCAACAACCTCATCCAGCGAATCAACCTGCGGAAGAGGCGGGACTCCCTAATCCTGGGTGCAGTCATCGGTGTCTGCACCATCCTCCTGCTGCTCTACGCCTTCCACTGATGACGGACAGACCGGTCGAACAATCGTTACTCTGCGCTTGTAACATCGGAATCAGGACTCTGGAGAATGGGCTTGAGTGATTGGAGGCTACTGAGTAGACGGACAGATAGACCGACAACCTTTTGGCCCAATCGGTTAACAGGATTGATCAAAGCCATCATGGACTACCTGATTTGTATTTAGCAGTGAGGGAAgaaggagatggggagatggagcagcatctttttgtttagtttttctATCAAAAGTGAATGTGCTGTTCAACTCTGGTTAAGGGAACGGAGACCAAATTTACTAATATGACTAGATTTTAAAGAATTATATATAAAGAACACTTGCTTCAATGAGGAGTTAAAGGCTCTGAAGACAGATTGCGGATGCGAAAGAGGGGGACTGTTTTGCTGTTGATTTCTGAGGTGGATGGATTTTTAGTTGAATGGTCGTTTTTTAGTGGCGGGAGATTCAGGAGGTTTATCATCATGAGCTGTACAATGTGCATTATTAATAAAttattaatatacagtatgtga

Function

symbol description
gosr1 Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; regulation of vesicle targeting, to, from or within Golgi; and vesicle fusion. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi medial cisterna; Golgi membrane; and cis-Golgi network. Orthologous to human GOSR1 (golgi SNAP receptor complex member 1).

NR:

description
Golgi SNAP receptor complex member 1-like isoform X1

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005801 cis-Golgi network cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08495 GOSR1, GOS1; golgi SNAP receptor complex member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965413.1 False 1124 mRNA 0.48 8 18992274 19032007
XM_021587842.2 False 1285 mRNA 0.48 9 18992277 19047785
XM_021587843.2 False 1336 mRNA 0.48 9 18992289 19047779
XM_036965414.1 True 1384 mRNA 0.47 9 18992391 19047785

Neighbor

gene id symbol gene type direction distance location
LOC110507689 LOC106581036 coding upstream 651 18956560 ~ 18991625 (+)
LOC110507687 LOC106612851 coding upstream 52235 18935541 ~ 18940039 (+)
LOC110507685 LOC106581023 coding upstream 107968 18861823 ~ 18884306 (+)
LOC110507684 LOC106581033 coding upstream 143002 18838232 ~ 18849272 (+)
sarm1 LOC106612856 coding upstream 172043 18805170 ~ 18820231 (+)
LOC110507699 LOC106581044 coding downstream 300985 19348770 ~ 19383505 (+)
LOC110507698 LOC106581045 coding downstream 345832 19393617 ~ 19407557 (+)
LOC110507701 LOC106581046 coding downstream 364886 19412671 ~ 19439667 (+)
LOC110507703 LOC106581047 coding downstream 392235 19440020 ~ 19502535 (+)
LOC110507704 LOC106581049 coding downstream 474381 19522166 ~ 19537134 (+)
G2059661 NA non-coding upstream 25434 18966322 ~ 18966840 (+)
G2059610 NA non-coding upstream 68680 18923086 ~ 18923594 (+)
G2059594 NA non-coding upstream 137076 18853566 ~ 18855198 (+)
G2059402 NA non-coding upstream 392100 18532495 ~ 18600174 (+)
G2059717 NA non-coding downstream 46297 19094082 ~ 19094319 (+)
G2059719 NA non-coding downstream 47913 19095698 ~ 19095944 (+)
G2059722 NA non-coding downstream 50704 19098489 ~ 19099017 (+)
G2059723 NA non-coding downstream 56977 19104762 ~ 19104971 (+)
G2059737 NA non-coding downstream 83742 19131527 ~ 19131743 (+)
G2059435 NA other upstream 397432 18571099 ~ 18594842 (+)
G2057945 NA other upstream 1116442 17873801 ~ 17875832 (+)
G2057804 NA other upstream 1406350 17583970 ~ 17585924 (+)
G2057788 NA other upstream 1425890 17555504 ~ 17566384 (+)
G2057561 NA other upstream 1775731 17213110 ~ 17219017 (+)
G2059714 NA other downstream 44162 19091947 ~ 19092272 (+)
G2059777 LOC106581039 other downstream 145672 19193457 ~ 19195184 (+)
LOC110507725 LOC106581066 other downstream 1010458 20058224 ~ 20059968 (+)
G2061226 NA other downstream 1257597 20305382 ~ 20306608 (+)
LOC110507744 p4ha3 other downstream 1657144 20697519 ~ 20708634 (+)

Expression


Co-expression Network