Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110507696 |
| gene name | LOC106581042 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048591.1 |
| NCBI id | CM023245.2 |
| chromosome length | 51556237 |
| location | 19296874 ~ 19328159 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| vacuolar protein sorting-associated protein 53 homolog |
| id | description |
|---|---|
| K20299 | VPS53; vacuolar protein sorting-associated protein 53 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021587847.2 | True | 4873 | mRNA | 0.47 | 22 | 19296874 | 19328159 |
19,292,000
19,296,000
19,300,000
19,304,000
19,308,000
19,312,000
19,316,000
19,320,000
19,324,000
19,328,000
19,332,000
19,336,000
19,340,000
19,344,000
19,348,000
19,352,000
19,356,000
NC_048591.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110507700 | LOC106581041 | coding | downstream | 324 | 19291238 ~ 19296550 (-) |
| LOC110507695 | exo5 | coding | downstream | 17210 | 19270010 ~ 19279664 (-) |
| LOC110507694 | LOC106581039 | coding | downstream | 85826 | 19190611 ~ 19211048 (-) |
| LOC110507692 | NA | coding | downstream | 136372 | 19134822 ~ 19160522 (-) |
| LOC110507691 | LOC106581038 | coding | downstream | 211245 | 19052882 ~ 19085629 (-) |
| aifm4 | LOC106581043 | coding | upstream | 1013 | 19329172 ~ 19392144 (-) |
| LOC110507706 | LOC106581048 | coding | upstream | 243464 | 19571623 ~ 19641866 (-) |
| LOC110507118 | LOC106581050 | coding | upstream | 314679 | 19642838 ~ 19725868 (-) |
| LOC110507708 | LOC106612831 | coding | upstream | 398035 | 19726194 ~ 19844340 (-) |
| LOC110507713 | serb | coding | upstream | 635039 | 19963198 ~ 19979976 (-) |
| G2060679 | NA | non-coding | downstream | 6134 | 19290409 ~ 19290740 (-) |
| G2060676 | NA | non-coding | downstream | 9860 | 19286718 ~ 19287014 (-) |
| G2060253 | NA | non-coding | downstream | 76174 | 19220452 ~ 19220700 (-) |
| G2060240 | NA | non-coding | downstream | 90856 | 19205801 ~ 19206018 (-) |
| G2060749 | NA | non-coding | upstream | 107600 | 19435759 ~ 19502524 (-) |
| G2060759 | NA | non-coding | upstream | 119836 | 19447995 ~ 19506563 (-) |
| G2060782 | NA | non-coding | upstream | 159079 | 19487238 ~ 19508803 (-) |
| G2060794 | NA | non-coding | upstream | 185636 | 19513795 ~ 19514035 (-) |
| G2060796 | NA | non-coding | upstream | 186469 | 19514628 ~ 19514916 (-) |
| G2058724 | NA | other | downstream | 1374122 | 17922342 ~ 17922752 (-) |
| LOC110507661 | LOC106581010 | other | downstream | 1827053 | 17464437 ~ 17481646 (-) |
| LOC110507646 | LOC106612894 | other | downstream | 2297089 | 16756597 ~ 17064214 (-) |
| G2056115 | NA | other | downstream | 3920359 | 15376215 ~ 15376515 (-) |
| LOC110507082 | LOC106580920 | other | downstream | 4761634 | 14532256 ~ 14719525 (-) |
| LOC110507754 | LOC106581192 | other | upstream | 1585955 | 20913520 ~ 20924130 (-) |
| LOC110507765 | dynll2a | other | upstream | 1942008 | 21270167 ~ 21273576 (-) |
| LOC110507126 | kiaa0100 | other | upstream | 1969506 | 21295518 ~ 21311437 (-) |
| LOC110507789 | LOC106581159 | other | upstream | 3384504 | 22712654 ~ 22718153 (-) |
| zbtb16b | LOC106581153 | other | upstream | 3476099 | 22780311 ~ 22808183 (-) |
