LOC110507699 (LOC106581044)


Basic Information

Item Value
gene id LOC110507699
gene name LOC106581044
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 19348770 ~ 19383505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587854.2
AGCACAAGTTACACAAGCAAGGATCATTTTATAATAGGAGCATTTCACAACTTGTATATCAATTCGCACGCTCAGCACATGCGTCCGAGAAAGCAATTCTGTCTTCTCCTTTGGCTGGTACTACAATAAAAATGGTCAACCTGAAATCATAGAATATAATAGATCATCATTGACGTCCACGCCTCACCTTCCATTTATGAGACAGAACGATCAAATTGCCTACATTTGAGTCGACTGACATCAGGAGTCGCAAGAACATTTATCGCTTTAGGCTGAATAACACGGAACTCCAAAGTAAAGTCAGTATGTTTGCTTTGACAGTGTAAATATCAATcgcgagcagagagagcgagcgcgtcGATCTTGAACAACTACAGCGCGCGAATTTTCTAACGTTGAATTCTTCAAGTGGAGTAGGACACAGAAAGGAGTTTGTCGTCGCCATGGAGTTGAATTCAGTGCTTTTGACTGCGGGTGGCTCTATTGGATTTTTTAAACTTGTCAACTGTGGTGTCAGTAAACTCCCTATTCCCGATACTGCTTGCAGAAACGCCTGGAAATGGAGAAATATCTGCACATCTTTCACCCACAGTCTGATAACTGGGATATGGGCTGTACTGTGCTTTTTCGTACACCCACAGATGGCCGAAGATTTGATAGGAACCCATTCTGTGTTCTCGCACACGTTGGTTTCTGTATCAAttgGCTACTTCATCTATGACTTCCTTGATATGGTGCTCAACCAGAAGATGATCCTGTCATGGGAGCTCCTATTCCATCACACAGTGgtGATCAGCTGTTTCGGCATCACCGTCCTGACCGGTCGCTACGTGGGCTTTGCTGTGGTGGCCCTCCTGGTTGAGATCAACTCTGTGTTCCTCCACCTGCGGCAGATCTTACGCATGGCCAACCTAGCAGAGGGCAACCTCTACCGCATCAACAGCATGGTCAACCTAGGTACCTATGTGGTGTTCCGGATCAACACCCTGGCCTGGATGACCCGCTGGCTGGTCCTGAACCGGGACAACATCCCCCTGTTCAGCTACACAGCGGGGAGTGTAGGGCTAGCCATTATGACCGCCATGAATATAGTGCTCTTCTACCGCCTGCTGAGGTCTGACTTCCTCAAGAGTAGTACACCCACGCCCACAGATTGTAAAGAGAGTAGAGGGcaaggagagggaaagaaggagacgtaggaaggaagggagggagggagaagagataaTGGCAGAGATTGTATAATGGCAGAGATGGATAAGATGTCCTTGAGTATTCGAGAGGGTGAGCAGGATGTATGAACACACGTACGTATGTACACACACAGGGAGATACATAAGACATCCTGTAGCGAAGCCGGGAGCGCGAGGATGTCagtcacaaacaaacacacacacatataaatacaCACTTTGTGGCCAACAGATCTTGTACCTTACACTTCCCCATCTCTTCTGTTTTGAGGTACAGGCGTTTACAATTCACACACACAAGGTCCATTGAATGATAGCCAAAAAGAAGTGACACATCTAtgaaataatgtgtgtgtatatatgtgtactGTGTGAGTGTGCAGGATAATGTGCTCTACTGTACCTTAGAAAGTTTGGGTTCTCACCCAAtcggtcgtgtgtgtgtgtatatatatagtcaaaagtttggacacacctactcattcaagtttttttttttaatttgtactattttctacattgtagaataatagtgaagacat

Function

NR:

description
TLC domain-containing protein 2-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587854.2 True 1735 mRNA 0.45 5 19348770 19383505

Neighbor

gene id symbol gene type direction distance location
LOC110507690 gosr1 coding upstream 300985 18992274 ~ 19047785 (+)
LOC110507689 LOC106581036 coding upstream 357147 18956560 ~ 18991625 (+)
LOC110507687 LOC106612851 coding upstream 408731 18935541 ~ 18940039 (+)
LOC110507685 LOC106581023 coding upstream 464464 18861823 ~ 18884306 (+)
LOC110507684 LOC106581033 coding upstream 499498 18838232 ~ 18849272 (+)
LOC110507698 LOC106581045 coding downstream 10112 19393617 ~ 19407557 (+)
LOC110507701 LOC106581046 coding downstream 29166 19412671 ~ 19439667 (+)
LOC110507703 LOC106581047 coding downstream 56515 19440020 ~ 19502535 (+)
LOC110507704 LOC106581049 coding downstream 138661 19522166 ~ 19537134 (+)
LOC110507705 LOC106581049 coding downstream 158308 19541813 ~ 19571142 (+)
G2060314 LOC106581042 non-coding upstream 23182 19315067 ~ 19325588 (+)
G2060312 NA non-coding upstream 35148 19312903 ~ 19313622 (+)
G2060296 NA non-coding upstream 49417 19297432 ~ 19299353 (+)
G2060299 NA non-coding upstream 52682 19295508 ~ 19296088 (+)
G2060255 exo5 non-coding upstream 77731 19220728 ~ 19271039 (+)
G2060321 NA non-coding downstream 134 19383639 ~ 19389286 (+)
G2060397 NA non-coding downstream 132735 19516240 ~ 19516570 (+)
G2060398 NA non-coding downstream 133499 19517004 ~ 19517341 (+)
G2060399 NA non-coding downstream 135510 19519015 ~ 19519444 (+)
G2060402 NA non-coding downstream 140901 19524406 ~ 19524648 (+)
G2059777 LOC106581039 other upstream 153586 19193457 ~ 19195184 (+)
G2059714 NA other upstream 256498 19091947 ~ 19092272 (+)
G2059435 NA other upstream 753928 18571099 ~ 18594842 (+)
G2057945 NA other upstream 1472938 17873801 ~ 17875832 (+)
G2057804 NA other upstream 1762846 17583970 ~ 17585924 (+)
LOC110507725 LOC106581066 other downstream 674738 20058224 ~ 20059968 (+)
G2061226 NA other downstream 921877 20305382 ~ 20306608 (+)
LOC110507744 p4ha3 other downstream 1321424 20697519 ~ 20708634 (+)
G2062402 NA other downstream 1761706 21145211 ~ 21146366 (+)
G2062531 NA other downstream 1896655 21280160 ~ 21281860 (+)

Expression


Co-expression Network