LOC110507725 (LOC106581066)


Basic Information

Item Value
gene id LOC110507725
gene name LOC106581066
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 20058224 ~ 20059968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587925.2
ACAAACACCACCTCCTACAACACAACTCTATAAATACTGGTCCCTTTTGTGTGAACCATCTCTGAACTCTTTGGGAATAGCTCGACTCCTCGGGACCTGTCTGTACTCAGGTTGGAGTGTGTGATACTCAGGTTGACGTGTGTGAGGTCAGGAACAATcagtggacagtgtgtgtgtgaggaactATTCAGTCAAGATGGTTTCCCAGGGGATCCAGATCATGGGCATCATCATGTCGTTGATCGGCTGGTTGATGGTCATCATCGTGTGTGCCCTGCCTATGTGGAAGGTCACAGCCTTCATTGGAGCCAACATCGTCACGGCCCAAACCATCTGGGAGGGAATGTGGATGAACTGTGTTGTGCAGAGCACTGGCCAGATGCAGTGTAAGGTCTACGACTCCATGCTGGCACTACCCCAGGACCTCCAGGCCGCCAGAGCAATGATCATCATCTCCATCCTGACAGGTATCTTCGGCATCTGCCTGTCGATTGCAGGAGGGAAATGCACCAACTGCATAGCAGAGGAGGGATCCAAGGCTAGAGCCTGTATTGTGGCTGGAGTCCTCTACATCATCTCAGGCATCCTCTGCCTCATCCCAGTGTCCTGGTCAGCCAACACCATCATCAGGGATTTCTACAACCCCATGCTGATCGAGGCCCAGAGGAGGGAGCTGGGGGCGTCTCTGTATATAGGCTGGGGTGCTGCAGCACTGCTGCTGATGGGAGGGGGGCTGCTGTGCTGGAACTGTCCCCCCAAGCAGGACCACCACTATCCGGCCAAGTTCTCTCAGGTCAGATCCACCTCCTCCGGACCCATGCAATATGTCTGAGATGTTCATGTCAGTGTCATGTTAAGATCTACTTAATCAAATTGAATTTAAATGAGGACACTAAAGACAGTTCTCATAACAAAAACTGTGAGAGTTTTAAATCACAAAGAACTTGAATGGGTTTGTTGAGTTAAAATAATGTTACGAGTTAtgttataattataatataagtattttagttttttttaaacagctgaTATTCTCTACTACTGAAGTACCCTGTTAATATCCTTTAATGTCAGATTAAATCCATGAGGTTAGGAATACTGTATATCAAGTTATGTCTCCATTTTGGCACTGTCTTAACATTGTTCCTGTGATTAAAACAAGtgtgtcatcattgtaaataaactgtacaatataaatataa
>TU2357227
ACACAACTCTATAAATACTGGTCCCTTTTGTGTGAACCATCTCTGAACTCTTTGGGAATAGCTCGACTCCTCGGGACCTGTCTGTACTCAGGTTGGAGTGTGTGATACTCAGGTTGACGTGTGTGAGGTCAGGAACAATcagtggacagtgtgtgtgtgaggaactATTCAGTCAAGATGGTTTCCCAGGGGATCCAGATCATGGGCATCATCATGTCGTTGATCGGCTGGTTGATGGTCATCATCGTGTGTGCCCTGCCTATGTGGAAGGTCACAGCCTTCATTGGAGCCAACATCGTCACGGCCCAAACCATCTGGGAGGGAATGTGGATGAACTGTGTTGTGCAGAGCACTGGCCAGATGCAGTGTAAGGTCTACGACTCCATGCTGGCACTACCCCAGGACCTCCAGGCCGCCAGAGCAATGATCATCATCTCCATCCTGACAGGTATCTTCGGCATCTGCCTGTCGATTGCAGGAGGGAAATGCACCAACTGCATAGCAGAGGAGGGATCCAAGGCTAGAGCCTGTATTGTGGCTGGAGTCCTCTACATCATCTCAGGCATCCTCTGCCTCATCCCAGTGTCCTGGTCAGCCAACACCATCATCAGGGATTTCTACAACCCCATGCTGATCGAGGCCCAGAGGAGGGAGCTGGGGGCGTCTCTGTATATAGGCTGGGGTGCTGCAGCACTGCTGCTGATGGGAGGGGGGCTGCTGTGCTGGAACTGTCCCCCCAAGCAGGACCACCACTATCCGGCCAAGTTCTCTCAGGCCAATCCGCACAGCACCAGACAATTGTTATCAGGTG

Function

NR:

description
claudin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587925.2 False 1202 mRNA 0.46 1 20058224 20059425
TU2357227 True 811 TUCP 0.54 2 20058243 20059968

Neighbor

gene id symbol gene type direction distance location
LOC118944721 NA coding upstream 2289 20055604 ~ 20055935 (+)
si:ch211-235m3.5 LOC106612826 coding upstream 22459 20015076 ~ 20035765 (+)
LOC118944791 NA coding upstream 69862 19988226 ~ 19988362 (+)
LOC118944790 NA coding upstream 70776 19987311 ~ 19987448 (+)
LOC118944793 NA coding upstream 71151 19986938 ~ 19987073 (+)
cldnf cldy coding downstream 3896 20063321 ~ 20064720 (+)
LOC110507726 LOC106612819 coding downstream 6126 20065551 ~ 20067850 (+)
LOC110507727 NA coding downstream 8566 20067991 ~ 20070531 (+)
LOC110507119 LOC106612920 coding downstream 16148 20075573 ~ 20076489 (+)
tyw1 LOC105029063 coding downstream 24144 20083569 ~ 20156245 (+)
G2061125 NA non-coding upstream 48709 20009194 ~ 20009515 (+)
G2061124 NA non-coding upstream 49098 20008923 ~ 20009126 (+)
G2061123 NA non-coding upstream 49431 20008587 ~ 20008793 (+)
G2061119 NA non-coding upstream 57780 19996690 ~ 20000444 (+)
G2061100 NA non-coding upstream 106076 19951848 ~ 19952148 (+)
G2061165 NA non-coding downstream 26971 20086396 ~ 20086789 (+)
G2061167 NA non-coding downstream 36135 20095560 ~ 20095759 (+)
G2061178 NA non-coding downstream 52531 20111956 ~ 20112255 (+)
G2061191 NA non-coding downstream 65713 20125138 ~ 20125441 (+)
G2061229 NA non-coding downstream 247306 20306731 ~ 20306831 (+)
G2059777 LOC106581039 other upstream 863040 19193457 ~ 19195184 (+)
G2059714 NA other upstream 965952 19091947 ~ 19092272 (+)
G2059435 NA other upstream 1463382 18571099 ~ 18594842 (+)
G2057945 NA other upstream 2182392 17873801 ~ 17875832 (+)
G2057804 NA other upstream 2472300 17583970 ~ 17585924 (+)
G2061226 NA other downstream 245957 20305382 ~ 20306608 (+)
LOC110507744 p4ha3 other downstream 645504 20697519 ~ 20708634 (+)
G2062402 NA other downstream 1085786 21145211 ~ 21146366 (+)
G2062531 NA other downstream 1220735 21280160 ~ 21281860 (+)
LOC110507128 LOC106581176 other downstream 1363287 21420062 ~ 21437148 (+)
LOC110507714 LOC106581054 coding upstream 68605 19981007 ~ 19989638 (+)

Expression


Co-expression Network