galnt17 (LOC106581212)


Basic Information

Item Value
gene id galnt17
gene name LOC106581212
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 20307603 ~ 20323469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587935.2
CATTATTAAGCGCTATCTAGCGCATAGGAAGAATTTGGCTAAATTAAATAACAGGACATAATAAGAAATCGGCGAAAATAAGGGTACAGGGGGATAACGTTTTGCATTATTTTGAATAGTCAGAATATGAGAAGACACCTCGGATGGAGTTATTTCAGCCGCATTTCTGTGCTGCATATGAGGTGTCTTTCATTGGCGATGCTGCGTCCACGGACCGTTATATTTTAGGCTGACTGGTTGTGTAGAAGTCTACTCGTGCAACACACCGCTCAAAACATCTCACAATTATTTTTCCTACACGCGGAGGATCAAAACTGCACAGAGAATGCTTAAACATGGGATAGGCCTATGCGTTTTATGTGGTCAGTATTTATCTGCTACGATTTTGAAGATCCGcggtcagagacagacagcggCTCAGTACGCAGTCCTTCTCAATCGCGTCATAGCCCACTTCTGCTGAATGCAAAGAAAGACAGACTTGAGACTCTTTAAATATTTAAGGATATGGACTCTTCAAAACTGAAGATATGCTAGTCTCTTTGTCTAACATATTCTATGCATGATCTTCTATCAATACATTTTAAACAGAGAAGTCACGGATGAGAGCCCATGACCAGGCTCCAAAATTACCCCGAACGAGGACGCAGCCCTACAATTGCTCCAATGCGAAATGGTCTGTCCAAGTCCCTGGGGCTGATTGAGGGTTTCGGGGGGCGAGGTAAAGGGGGCCTCCCTGCCACCCTAGCCACAAAAGAAGAGGACGACGCAAAAGTACTGAGGGAAAAGTATGGATACAACGCTTACCTCAGCCAAAAGATATCACTGGATCGGTCCATACCAGACTACCGGCCCAGCAAGTGTAAAAAGGCCAGCTTCCCCAGGGATCTTCCAAACATCTCCCTTATCTTTATCTTTGTCAACGAGGCGTTGTCAGTAATCCTCCGCTCGGTCCACTCAGCTGTCAATCACACACCGGCACACCTCCTCAAAGAGATCATCTTGGTGGACGACTACAGCGATGATGAACAACTGAAAGGGCCATTGGAGGATTATGTAAACAAGCGTTACCCAGGCCTGGTGAAAATGGTGAGGAACCAGAAGCGTGAGGGACTGATCCGTGCCCGCATCGAGGGCTGGAAGGCAGCCAGTGGCGAGGTGACTGGATTCTTCGATGCCCACGTTGAGTTCACACCCTCCTGGGCTGAGCCGGTTCTGACCAGAATCAAAGAGGACCACAAGAGGATCATCCTGCCCTCCATCGATAACATCAAGCATGAGACGTTTGAGCTGGAGCGCTACGAGAACTCTGGCCATGGCTACAACTGGGAGCTGTGGTGCATGTACATCAACCCCCCAAAACAGTGGTGGGATGACGGGGACACCTCCGCACCCATTAGAACTCCTGCAATGATTGGTTGCTCCTTTGTGGTGAACCGGGACTACTTTGGGCACCTGGGGCTGCTGGACTCTGGCATGGACGTCTACGGAGGAGAGAACATCGAACTGGGGATCAAGGTGTGGCTGTGTGGGGGCAGTATGGAGGTGCTTCCCTGCTCCAGGGTAGCTCACATTGCCAGGATGAAGAAGCCCTACCACAGCAACATAGCCTCCAGCACGCGCCGTAATGCCCTGCGCGTGGCCGAGGTCTGGATGGACCAGTTTAAGTCGCATGTCTACCTGGCTTGGAACATCCCAATGGAGAACCATGGGATAGACTATGGAGACATCTCTCAGAGGGTAGCATTGAGGAAATCTCTGCAATGTAAGAACTTTGAGTGGTACCTGGACAACGTCTATCCAGAGATGAGGAGGTACAACAACACCGTCTTTTACGGGGAGATTCGTAGTAGCAAAGCGACCCATCTGTGTATGGACCAGGGAGAGAAGGTGAACCATACAGCCACCCTGCACCCCTGTCACGGAATGGGACCCCAGTTGGGTCGGTACACCAAGGAGGGACAGTTTTTCCTCGGTGCTCTGGGCAGTACAGGGGAGGAAACACGCTGTCTGATGGACGATCAGGTCTCCAATTTTCCTCAGCTCCTCAACTGTGACAAAGTCACCAACACCAGGCTGACCACATGGCACTTCTCTCAGAACGACTCAATCGTCAACAGAGCCACGGGTCGCTGTCTGGAGGTGATACAGGCGAACGCTTACTTCGGACACTCGCTGGTGCTTCAGACCTGCTCTGGACAGAAGTGGAACATCAAAAACACAATGAAGCAGTAGCCACAGCATGATGCAGAATTATTCCTTGACCAAGATAGTGTTATTGTACTGAATTGAATCAGTTGTCATACTGTATTATTAAAATTCTTCAGTTGGTGTTTTCCAAGATTGTCTTCCAATAAACTGCTGGTCTGAtggtttaaaaaa
>XM_021587933.2
CCATTATTAAGCGCTATCTAGCGCATAGGAAGAATTTGGCTAAATTAAATAACAGGACATAATAAGAAATCGGCGAAAATAAGGGTACAGGGGGATAACGTTTTGCATTATTTTGAATAGTCAGAATATGAGAAGACACCTCGGATGGAGTTATTTCAGCCGCATTTCTGTGCTGCATATGAGGTGTCTTTCATTGGCGATGCTGCGTCCACGGACCGTTATATTTTAGGCTGACTGGTTGTGTAGAAGTCTACTCGTGCAACACACCGCTCAAAACATCTCACAATTATTTTTCCTACACGCGGAGGATCAAAACTGCACAGAGAATGCTTAAACATGGGATAGGCCTATGCGTTTTATGTGGTCAGTATTTATCTGCTACGATTTTGAAGATCCGcggtcagagacagacagcggCTCAGTACGCAGTCCTTCTCAATCGCGTCATAGCCCACTTCTGCTGAATGCAAAGAAAGACAGACTTGAGACTCTTTAAATATTTAAGGATATGGACTCTTCAAAACTGAAGATATGCTAGTCTCTTTGTCTAACATATTCTATGCATGATCTTCTATCAATACATTTTAAACAGAGAAGTCACGGATGAGAGCCCATGACCAGGCTCCAAAATTACCCCGAACGAGGACGCAGCCCTACAATTGCTCCAATGCGAAATGCACCAGCTTCTCCAGGTGGAATGTCGTCTacggtatatatatattttgaaaatACCTTCATAAACACAAATCTACATTGAACCTTATTGCGCATCACAAAGAGGAGGACTCCTGAATTTGTCCTGATTCATTCCAAAAACACTGCTATTTGGATCCCGGACATCAACAACTTTAATGGCTTTTGTGTTCAGACGATGGAGAGTGTTATTGGTGCTGAACGTGATTGCGGTTGCGGGGTTCATGACGCTTTGGACCAAGTGCACCCACAACCGAGTGACAAAAACCATCGGTCAGGACGATGTGAAAAGACAATCACGCTCTAACGGCACGGCTCAAGGTTTGAGCATCAGTCATGAAGTATTACTAAAGAGACTCGGGTCATTGGAGGACGTGGTCTACAGACAGCTTAATGGTCTGTCCAAGTCCCTGGGGCTGATTGAGGGTTTCGGGGGGCGAGGTAAAGGGGGCCTCCCTGCCACCCTAGCCACAAAAGAAGAGGACGACGCAAAAGTACTGAGGGAAAAGTATGGATACAACGCTTACCTCAGCCAAAAGATATCACTGGATCGGTCCATACCAGACTACCGGCCCAGCAAGTGTAAAAAGGCCAGCTTCCCCAGGGATCTTCCAAACATCTCCCTTATCTTTATCTTTGTCAACGAGGCGTTGTCAGTAATCCTCCGCTCGGTCCACTCAGCTGTCAATCACACACCGGCACACCTCCTCAAAGAGATCATCTTGGTGGACGACTACAGCGATGATGAACAACTGAAAGGGCCATTGGAGGATTATGTAAACAAGCGTTACCCAGGCCTGGTGAAAATGGTGAGGAACCAGAAGCGTGAGGGACTGATCCGTGCCCGCATCGAGGGCTGGAAGGCAGCCAGTGGCGAGGTGACTGGATTCTTCGATGCCCACGTTGAGTTCACACCCTCCTGGGCTGAGCCGGTTCTGACCAGAATCAAAGAGGACCACAAGAGGATCATCCTGCCCTCCATCGATAACATCAAGCATGAGACGTTTGAGCTGGAGCGCTACGAGAACTCTGGCCATGGCTACAACTGGGAGCTGTGGTGCATGTACATCAACCCCCCAAAACAGTGGTGGGATGACGGGGACACCTCCGCACCCATTAGAACTCCTGCAATGATTGGTTGCTCCTTTGTGGTGAACCGGGACTACTTTGGGCACCTGGGGCTGCTGGACTCTGGCATGGACGTCTACGGAGGAGAGAACATCGAACTGGGGATCAAGGTGTGGCTGTGTGGGGGCAGTATGGAGGTGCTTCCCTGCTCCAGGGTAGCTCACATTGCCAGGATGAAGAAGCCCTACCACAGCAACATAGCCTCCAGCACGCGCCGTAATGCCCTGCGCGTGGCCGAGGTCTGGATGGACCAGTTTAAGTCGCATGTCTACCTGGCTTGGAACATCCCAATGGAGAACCATGGGATAGACTATGGAGACATCTCTCAGAGGGTAGCATTGAGGAAATCTCTGCAATGTAAGAACTTTGAGTGGTACCTGGACAACGTCTATCCAGAGATGAGGAGGTACAACAACACCGTCTTTTACGGGGAGATTCGTAGTAGCAAAGCGACCCATCTGTGTATGGACCAGGGAGAGAAGGTGAACCATACAGCCACCCTGCACCCCTGTCACGGAATGGGACCCCAGTTGGGTCGGTACACCAAGGAGGGACAGTTTTTCCTCGGTGCTCTGGGCAGTACAGGGGAGGAAACACGCTGTCTGATGGACGATCAGGTCTCCAATTTTCCTCAGCTCCTCAACTGTGACAAAGTCACCAACACCAGGCTGACCACATGGCACTTCTCTCAGAACGACTCAATCGTCAACAGAGCCACGGGTCGCTGTCTGGAGGTGATACAGGCGAACGCTTACTTCGGACACTCGCTGGTGCTTCAGACCTGCTCTGGACAGAAGTGGAACATCAAAAACACAATGAAGCAGTAGCCACAGCATGATGCAGAATTATTCCTTGACCAAGATAGTGTTATTGTACTGAATTGAATCAGTTGTCATACTGTATTATTAAAATTCTTCAGTTGGTGTTTTCCAAGATTGTCTTCCAATAAACTGCTGGTCTGAtggtttaaaaaa
>XM_021587931.2
GCCATTATTAAGCGCTATCTAGCGCATAGGAAGAATTTGGCTAAATTAAATAACAGGACATAATAAGAAATCGGCGAAAATAAGGGTACAGGGGGATAACGTTTTGCATTATTTTGAATAGTCAGAATATGAGAAGACACCTCGGATGGAGTTATTTCAGCCGCATTTCTGTGCTGCATATGAGGTGTCTTTCATTGGCGATGCTGCGTCCACGGACCGTTATATTTTAGGCTGACTGGTTGTGTAGAAGTCTACTCGTGCAACACACCGCTCAAAACATCTCACAATTATTTTTCCTACACGCGGAGGATCAAAACTGCACAGAGAATGCTTAAACATGGGATAGGCCTATGCGTTTTATGTGGTCAGTATTTATCTGCTACGATTTTGAAGATCCGcggtcagagacagacagcggCTCAGTACGCAGTCCTTCTCAATCGCGTCATAGCCCACTTCTGCTGAATGCAAAGAAAGACAGACTTGAGACTCTTTAAATATTTAAGGATATGGACTCTTCAAAACTGAAGATATGCTAGTCTCTTTGTCTAACATATTCTATGCATGATCTTCTATCAATACATTTTAAACAGAGAAGTCACGGATGAGAGCCCATGACCAGGCTCCAAAATTACCCCGAACGAGGACGCAGCCCTACAATTGCTCCAATGCGAAATGCACCAGCTTCTCCAGGTGGAATGTCGTCTacgACGATGGAGAGTGTTATTGGTGCTGAACGTGATTGCGGTTGCGGGGTTCATGACGCTTTGGACCAAGTGCACCCACAACCGAGTGACAAAAACCATCGGTCAGGACGATGTGAAAAGACAATCACGCTCTAACGGCACGGCTCAAGGTTTGAGCATCAGTCATGAAGTATTACTAAAGAGACTCGGGTCATTGGAGGACGTGGTCTACAGACAGCTTAATGGTCTGTCCAAGTCCCTGGGGCTGATTGAGGGTTTCGGGGGGCGAGGTAAAGGGGGCCTCCCTGCCACCCTAGCCACAAAAGAAGAGGACGACGCAAAAGTACTGAGGGAAAAGTATGGATACAACGCTTACCTCAGCCAAAAGATATCACTGGATCGGTCCATACCAGACTACCGGCCCAGCAAGTGTAAAAAGGCCAGCTTCCCCAGGGATCTTCCAAACATCTCCCTTATCTTTATCTTTGTCAACGAGGCGTTGTCAGTAATCCTCCGCTCGGTCCACTCAGCTGTCAATCACACACCGGCACACCTCCTCAAAGAGATCATCTTGGTGGACGACTACAGCGATGATGAACAACTGAAAGGGCCATTGGAGGATTATGTAAACAAGCGTTACCCAGGCCTGGTGAAAATGGTGAGGAACCAGAAGCGTGAGGGACTGATCCGTGCCCGCATCGAGGGCTGGAAGGCAGCCAGTGGCGAGGTGACTGGATTCTTCGATGCCCACGTTGAGTTCACACCCTCCTGGGCTGAGCCGGTTCTGACCAGAATCAAAGAGGACCACAAGAGGATCATCCTGCCCTCCATCGATAACATCAAGCATGAGACGTTTGAGCTGGAGCGCTACGAGAACTCTGGCCATGGCTACAACTGGGAGCTGTGGTGCATGTACATCAACCCCCCAAAACAGTGGTGGGATGACGGGGACACCTCCGCACCCATTAGAACTCCTGCAATGATTGGTTGCTCCTTTGTGGTGAACCGGGACTACTTTGGGCACCTGGGGCTGCTGGACTCTGGCATGGACGTCTACGGAGGAGAGAACATCGAACTGGGGATCAAGGTGTGGCTGTGTGGGGGCAGTATGGAGGTGCTTCCCTGCTCCAGGGTAGCTCACATTGCCAGGATGAAGAAGCCCTACCACAGCAACATAGCCTCCAGCACGCGCCGTAATGCCCTGCGCGTGGCCGAGGTCTGGATGGACCAGTTTAAGTCGCATGTCTACCTGGCTTGGAACATCCCAATGGAGAACCATGGGATAGACTATGGAGACATCTCTCAGAGGGTAGCATTGAGGAAATCTCTGCAATGTAAGAACTTTGAGTGGTACCTGGACAACGTCTATCCAGAGATGAGGAGGTACAACAACACCGTCTTTTACGGGGAGATTCGTAGTAGCAAAGCGACCCATCTGTGTATGGACCAGGGAGAGAAGGTGAACCATACAGCCACCCTGCACCCCTGTCACGGAATGGGACCCCAGTTGGGTCGGTACACCAAGGAGGGACAGTTTTTCCTCGGTGCTCTGGGCAGTACAGGGGAGGAAACACGCTGTCTGATGGACGATCAGGTCTCCAATTTTCCTCAGCTCCTCAACTGTGACAAAGTCACCAACACCAGGCTGACCACATGGCACTTCTCTCAGAACGACTCAATCGTCAACAGAGCCACGGGTCGCTGTCTGGAGGTGATACAGGCGAACGCTTACTTCGGACACTCGCTGGTGCTTCAGACCTGCTCTGGACAGAAGTGGAACATCAAAAACACAATGAAGCAGTAGCCACAGCATGATGCAGAATTATTCCTTGACCAAGATAGTGTTATTGTACTGAATTGAATCAGTTGTCATACTGTATTATTAAAATTCTTCAGTTGGTGTTTTCCAAGATTGTCTTCCAATAAACTGCTGGTCTGAtggtttaaaaaa

Function

NR:

description
putative polypeptide N-acetylgalactosaminyltransferase-like protein 3 isoform X1

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587935.2 False 2382 mRNA 0.49 11 20307603 20323467
XM_021587933.2 False 2795 mRNA 0.49 12 20307603 20323468
XM_021587931.2 True 2637 mRNA 0.49 13 20307603 20323469
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110507728 LOC106581067 coding downstream 224542 20077668 ~ 20083061 (-)
LOC110507721 LOC106581060 coding downstream 259479 20046750 ~ 20048124 (-)
LOC110507720 LOC106581059 coding downstream 262408 20043471 ~ 20045195 (-)
LOC110507719 LOC106581058 coding downstream 265171 20040304 ~ 20042432 (-)
LOC110507717 NA coding downstream 298558 20003826 ~ 20009045 (-)
LOC110507735 NA coding upstream 93609 20417078 ~ 20426186 (-)
LOC110507121 dnhd1 coding upstream 146883 20470352 ~ 20518901 (-)
si:ch211-149e23.4 LOC106581205 coding upstream 197304 20520773 ~ 20626494 (-)
diabloa LOC106581203 coding upstream 326410 20649879 ~ 20652780 (-)
ywhag2 143g2 coding upstream 467219 20790688 ~ 20797260 (-)
G2061897 NA non-coding downstream 959 20300767 ~ 20306644 (-)
G2061805 NA non-coding downstream 168328 20139022 ~ 20139275 (-)
G2061795 NA non-coding downstream 183814 20123080 ~ 20123789 (-)
G2061790 NA non-coding downstream 189650 20117742 ~ 20117953 (-)
G2061784 NA non-coding downstream 195361 20112001 ~ 20112242 (-)
G2061929 NA non-coding upstream 18273 20341742 ~ 20347806 (-)
G2061976 LOC106581210 non-coding upstream 72584 20396053 ~ 20398321 (-)
G2061974 NA non-coding upstream 106931 20430400 ~ 20454648 (-)
G2061993 NA non-coding upstream 170013 20493482 ~ 20493781 (-)
G2061995 NA non-coding upstream 180475 20503944 ~ 20504143 (-)
G2058724 NA other downstream 2384851 17922342 ~ 17922752 (-)
LOC110507661 LOC106581010 other downstream 2837782 17464437 ~ 17481646 (-)
LOC110507646 LOC106612894 other downstream 3307818 16756597 ~ 17064214 (-)
G2056115 NA other downstream 4931088 15376215 ~ 15376515 (-)
LOC110507082 LOC106580920 other downstream 5772363 14532256 ~ 14719525 (-)
LOC110507754 LOC106581192 other upstream 590645 20913520 ~ 20924130 (-)
LOC110507765 dynll2a other upstream 946698 21270167 ~ 21273576 (-)
LOC110507126 kiaa0100 other upstream 974196 21295518 ~ 21311437 (-)
LOC110507789 LOC106581159 other upstream 2389194 22712654 ~ 22718153 (-)
zbtb16b LOC106581153 other upstream 2480789 22780311 ~ 22808183 (-)

Expression

galnt17(LOC106581212) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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galnt17(LOC106581212) Expression in each Bioproject

Bar chart with 16 bars.
galnt17(LOC106581212) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network