LOC110507744 (p4ha3)


Basic Information

Item Value
gene id LOC110507744
gene name p4ha3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 20697519 ~ 20708634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965423.1
GGTTAGATTATTTGATATTCATAGTTATTATAAAGCAATTTAACGAGACAATTATATAAGTGGAAGGCAGGGACTGGGCACATTCATGCATCACAATTCCAACGTGCAAGCTGTTGCAATACATTTAAGCAAATACAGTTTTCCTAAACTACCTAATGTAATATGATTGTACATTAATCATGCAACTTCATATATGAGATAGGTATTGTTGAACTATTCCTCCGGATGACAGATCATGTGAAGTGGTGAAAGCTGATGTCTTAGGTGTGACCGGCGCGCGCTGTTGAGAAAGAACATTGCAGAGATTTACACAGAACAGCAGGACGGAGCGCAGCTTTCCCGTAGGACAGGTTTGAGTGGTTTCAAACAAGAAACTGCGCTACACTTTATACATTGACAGCAAGAACAATTGTAGAttagaatttacaaaaaaatctaGCACAAGCATAGGCAACATTTTAAACATAATCGAGGGGATCATACGCGCGCAAAATGCTATATTATTTCAAATCCATTTACTCAGCCTGTGTTGTAATCCGTGTAATTTTGATGCCGTTATCTTTTGGTGAGATGTATACGTCATTATTGAACGTAAAACAAGCCATCAATGTTGAAAGACAACTTATTGATCATTTAGAAACTTACATCGAACACGAATCGGAGAGACTTGAAGACATAAAAAGGTTTTATGCAAAGGTGTCAGACTTGCACAGTGAGGTGTACAGTGGACCATCAGCTGCTATGGCAAACCCCTTGGTGGCGTTCACTCTTATCAAGCGCTTGCAGTCCGAGTGGCTGAATCTGATCTACAGTGATGAAGCACAAGAGAACACCCAAGACTTCAGGTCTGGTTacgaggaggtggagaaggagggcAGCTTGCCCAAACTGGAGGACCTTCAGGGGGCTGCCAAGGGACTGATGAGGCTGCAGGATGTGTATGCCCTTCAAGTGGGGGGACTTGTGAGAGGTCACTTCCAGAGGATCACTGACGGCAACCCCATTGACATCTACAGTCCCACAGTATCTGTTCCTCTTTCTGGGGATGATTGCTTCCTGGTTGGGAAGGTTGCCTATGAGCTGGAGGACTACTACCACTCAGTGCAGTGGCTGGAGGAGTCAGTGCGTCTGTTTCGAGGGGCGGGGGGGGAATGGAGTCCAGAGAATGAGGGAACTCTGGAAGATGCTTTGGATCACCTGGCTTTTTCTCACTTCAAGACAGGAAACATTTCCTATGCACTGAGTCTCTCTCAGGAGTTGTTGAACCATGATCCGATGAACGGGAGAGTTTTAAAGAATGTACAGAAGTATGAGCGACTGCTAGTTGACAGTCCACCCTTACTGAGCACTGACACTGGGTTGAAGAGGCCCAACACCACCTATCTACGGACAAGGAATACCTATGAGAGACTATGTCGGACACAGGGCACTCAGCCAATCAGACGTGAGGTGCTGAGCCTGCAGCCTTACGTGGTCCTCTACCACAGCTTCATCACTGACTCAGAGGCAGAGAGCATCAGGGAACTCGCCCAGACAGGGTTAAGGAGATCTGTGGTGGCATCTGGAGAGGAACAGGCTACTGCAGAGTATCGCATCAGCAAGAGTGCATGGTTAAAGGAGACAGCCCACCCTATCATTGGGAGGCTGGACCAGAGAATCGCCTTGCTCACAAGTCTCAATGTGCAGCCTCCGTATGCAGAGTACCTCCAAGTGGTAAACTATGGGATTGGAGGACACTATGAACCCCATTTTGACCATGCAACGTCAGCATCAAGCCCCCTTTTTAGGCTCAACACTGGGAATCGAGTGGCAACCTTCATGATATACCTCAGCACTGTGGACGCAGGTGGGTCCACAGCCTTCATCCATGCTAACTTCAGCGTTCCTGTTCTGGAGAATGCTGCCCTTTTCTGGTGGAACCTCCATCGGAACGGTCAAGGAGATGGGGACACTCTGCATGCTGGCTGCCCTGTCCTTGTTGGGGACAAATGGGTGGCTAACAAATGGATCCATGAGTATGGCCAGGAGTTCCAGAGACGCTGTAGCCCCAATCCTgaggagtgagaagagagaaAGCAGCTGCTGGGACCGCTTGGAGTACAAGAGCCAGTCTCCACAATGGAGCCGCGCGCACCACgcaggcagagcgagagagggaaggaatGAGAGAGGGCATGAGAGAGCGCTAGCGGCTGGGGGAGGGGAAGGCAACCAAGGAGCAGCCTGCATCTGTGATTGGAGCTTCAGGCCCAAGGGAATAAGGAGCACAGACACTGCTGGAGGGGGCTGGAATGGCAGGGGGGCTGAGTTGGTTTTGGGAAGGGGGGGTGGTGGGTGTAGAGGGGGCATTTGGCAATCAGCCCCAAAGGCAGAGCGGCCTCTTGCTCCAACTCCCCAGTCAGTCCCtgctggagcagagagagagaggcctctaCCCTCACACACTGGGCTGGTTTCAGTTAACTCTGCTAGGCTGTTTGCCTCCGGTGTCAGTTTGTTTGGGGGGGAAAAAACGTATAATGCATCCTTTTGAAAAGTGATGCACTGAATCTGTCAGGATACTCTTCACACGGACTGATCTCATTAGCACAGCACTGATCTTTATCAGAATATTTAGTTTTAGAATAATATTTCTGGAACCATTTCACACCTTAAGAATGTAGTTAAGAGCAGTGCTGTTATTCAGAGGAAAAGGGTTATTGTAACTATTTCCCATTCATGCTCAGTCAGTTCAGGAAATCAAAGGAGATGAGGTCGTCGTCTCTCCCACTGAGGGGCTTGATGACATTTGGTGTGTTCTCTATTGCTCATCTCCTTGTAGCTAATGGAATGGATATGAGTCAAACCTGTTTAGTCTTCTAACTCCCATTCAGTGGCATCATGCATTAGTCATGGTCTGTAAACCAGATGATTGGAAAGTGGGAATGCATCTGCTTTAGTACCGAGTCTCTGACCTCAAATCCTGGGTGTCTAGCTGCCTACCAACCAGACAAAAGATTTGTCTGTATGTAGGTCAGAGAGTGCATGCTAGCTTTCACACCTAGTCTATGAGGGTGAGGAGTGAAATGTACTTACTATAGGAGCTGTAGGCTCCAAGGAGCTTTTCTGTCAGTGCTGCTGCCTTTTGAGTGACAGGGAGTgttgaggaagggagaggggttCAACAGGGACCATATCTCTGCCTGCTGAGATGTAAGGAAGTATTCCCTCCAGTGCTCAACCCCCTACCACTCCTCccctttagacacacacacaccgatacaAATACAGGGGCCATATACTACAGGAATGCTACATGCTCCCATCTGCATTCCTTAACAGTAGACCTTGATTGTTCCCCCTGGAGTGAATTGACAGGAGGCCCATACTTGATAAAATGCATGGAGGATGGAGGTTGTGTCTTTGGAGTTTCTCCAACCAAGAAAGAGTATTCTCTGGAATTCTCAATCTTTATATGgttttaaaataaatacatatttttgttAAA
>XM_021587954.2
GATATTCATAGTTATTATAAAGCAATTTAACGAGACAATTATATAAGTGGAAGGCAGGGACTGGGCACATTCATGCATCACAATTCCAACGTGCAAGCTGTTGCAATACATTTAAGCAAATACAGTTTTCCTAAACTACCTAATGTAATATGATTGTACATTAATCATGCAACTTCATATATGAGATAGGTATTGTTGAACTATTCCTCCGGATGACAGATCATGTGAAGTGGTGAAAGCTGATGTCTTAGGTGTGACCGGCGCGCGCTGTTGAGAAAGAACATTGCAGAGATTTACACAGAACAGCAGGACGGAGCGCAGCTTTCCCGTAGGACAGGTTTGAGTGGTTTCAAACAAGAAACTGCGCTACACTTTATACATTGACAGCAAGAACAATTGTAGAttagaatttacaaaaaaatctaGCACAAGCATAGGCAACATTTTAAACATAATCGAGGGGATCATACGCGCGCAAAATGCTATATTATTTCAAATCCATTTACTCAGCCTGTGTTGTAATCCGTGTAATTTTGATGCCGTTATCTTTTGGTGAGATGTATACGTCATTATTGAACGTAAAACAAGCCATCAATGTTGAAAGACAACTTATTGATCATTTAGAAACTTACATCGAACACGAATCGGAGAGACTTGAAGACATAAAAAGGTTTTATGCAAAGGTGTCAGACTTGCACAGTGAGGTGTACAGTGGACCATCAGCTGCTATGGCAAACCCCTTGGTGGCGTTCACTCTTATCAAGCGCTTGCAGTCCGAGTGGCTGAATCTGATCTACAGTGATGAAGCACAAGAGAACACCCAAGACTTCAGGTCTGGTTacgaggaggtggagaaggagggcAGCTTGCCCAAACTGGAGGACCTTCAGGGGGCTGCCAAGGGACTGATGAGGCTGCAGGATGTGTATGCCCTTCAAGTGGGGGGACTTGTGAGAGGTCACTTCCAGAGGATCACTGACGGCAACCCCATTGACATCTACAGTCCCACAGTATCTGTTCCTCTTTCTGGGGATGATTGCTTCCTGGTTGGGAAGGTTGCCTATGAGCTGGAGGACTACTACCACTCAGTGCAGTGGCTGGAGGAGTCAGTGCGTCTGTTTCGAGGGGCGGGGGGGGAATGGAGTCCAGAGAATGAGGGAACTCTGGAAGATGCTTTGGATCACCTGGCTTTTTCTCACTTCAAGACAGGAAACATTTCCTATGCACTGAGTCTCTCTCAGGAGTTGTTGAACCATGATCCGATGAACGGGAGAGTTTTAAAGAATGTACAGAAGTATGAGCGACTGCTAGTTGACAGTCCACCCTTACTGAGCACTGACACTGGGTTGAAGAGGCCCAACACCACCTATCTACGGACAAGGAATACCTATGAGAGACTATGTCGGACACAGGGCACTCAGCCAACGCATTATGAAAACCCCCGGCTCTTCTGTGACTATTTTAACAATGACAATCCTGGGTTGCTACTGCAGCCAATCAGACGTGAGGTGCTGAGCCTGCAGCCTTACGTGGTCCTCTACCACAGCTTCATCACTGACTCAGAGGCAGAGAGCATCAGGGAACTCGCCCAGACAGGGTTAAGGAGATCTGTGGTGGCATCTGGAGAGGAACAGGCTACTGCAGAGTATCGCATCAGCAAGAGTGCATGGTTAAAGGAGACAGCCCACCCTATCATTGGGAGGCTGGACCAGAGAATCGCCTTGCTCACAAGTCTCAATGTGCAGCCTCCGTATGCAGAGTACCTCCAAGTGGTAAACTATGGGATTGGAGGACACTATGAACCCCATTTTGACCATGCAACGTCAGCATCAAGCCCCCTTTTTAGGCTCAACACTGGGAATCGAGTGGCAACCTTCATGATATACCTCAGCACTGTGGACGCAGGTGGGTCCACAGCCTTCATCCATGCTAACTTCAGCGTTCCTGTTCTGGAGAATGCTGCCCTTTTCTGGTGGAACCTCCATCGGAACGGTCAAGGAGATGGGGACACTCTGCATGCTGGCTGCCCTGTCCTTGTTGGGGACAAATGGGTGGCTAACAAATGGATCCATGAGTATGGCCAGGAGTTCCAGAGACGCTGTAGCCCCAATCCTgaggagtgagaagagagaaAGCAGCTGCTGGGACCGCTTGGAGTACAAGAGCCAGTCTCCACAATGGAGCCGCGCGCACCACgcaggcagagcgagagagggaaggaatGAGAGAGGGCATGAGAGAGCGCTAGCGGCTGGGGGAGGGGAAGGCAACCAAGGAGCAGCCTGCATCTGTGATTGGAGCTTCAGGCCCAAGGGAATAAGGAGCACAGACACTGCTGGAGGGGGCTGGAATGGCAGGGGGGCTGAGTTGGTTTTGGGAAGGGGGGGTGGTGGGTGTAGAGGGGGCATTTGGCAATCAGCCCCAAAGGCAGAGCGGCCTCTTGCTCCAACTCCCCAGTCAGTCCCtgctggagcagagagagagaggcctctaCCCTCACACACTGGGCTGGTTTCAGTTAACTCTGCTAGGCTGTTTGCCTCCGGTGTCAGTTTGTTTGGGGGGGAAAAAACGTATAATGCATCCTTTTGAAAAGTGATGCACTGAATCTGTCAGGATACTCTTCACACGGACTGATCTCATTAGCACAGCACTGATCTTTATCAGAATATTTAGTTTTAGAATAATATTTCTGGAACCATTTCACACCTTAAGAATGTAGTTAAGAGCAGTGCTGTTATTCAGAGGAAAAGGGTTATTGTAACTATTTCCCATTCATGCTCAGTCAGTTCAGGAAATCAAAGGAGATGAGGTCGTCGTCTCTCCCACTGAGGGGCTTGATGACATTTGGTGTGTTCTCTATTGCTCATCTCCTTGTAGCTAATGGAATGGATATGAGTCAAACCTGTTTAGTCTTCTAACTCCCATTCAGTGGCATCATGCATTAGTCATGGTCTGTAAACCAGATGATTGGAAAGTGGGAATGCATCTGCTTTAGTACCGAGTCTCTGACCTCAAATCCTGGGTGTCTAGCTGCCTACCAACCAGACAAAAGATTTGTCTGTATGTAGGTCAGAGAGTGCATGCTAGCTTTCACACCTAGTCTATGAGGGTGAGGAGTGAAATGTACTTACTATAGGAGCTGTAGGCTCCAAGGAGCTTTTCTGTCAGTGCTGCTGCCTTTTGAGTGACAGGGAGTgttgaggaagggagaggggttCAACAGGGACCATATCTCTGCCTGCTGAGATGTAAGGAAGTATTCCCTCCAGTGCTCAACCCCCTACCACTCCTCccctttagacacacacacaccgatacaAATACAGGGGCCATATACTACAGGAATGCTACATGCTCCCATCTGCATTCCTTAACAGTAGACCTTGATTGTTCCCCCTGGAGTGAATTGACAGGAGGCCCATACTTGATAAAATGCATGGAGGATGGAGGTTGTGTCTTTGGAGTTTCTCCAACCAAGAAAGAGTATTCTCTGGAATTCTCAATCTTTATATGgttttaaaataaatacatatttttgttAAA
>TU2357640
CgcgccccacagtttgggaaccactgccctagtacactacttttgaccagggcccatagttcTCGGGTCAAAattagtgctctatataggggaatagggtaccatttgagacaTAGCCATAGTCTATGGCGGTAAAGTAAGGAAGGACATTATATATTAATGATTACTATTTCCTACATATAACCAGTCAGCATCAAGCCCCCTTTTTAGGCTCAACACTGGGAATCGAGTGGCAACCTTCATGATATACGTAAGTTAAtcatttgttttatcttgttatCTTATTATATGTGCATGATTGTCTCATTTGTGGAAATCCAGTAAAAGCATCTTTGGAGATAGTGTATGCTAGATTGCATTTATCAGCATAAGAATTCAGTATTATCTTATTGAAAATTGCAATGATATTTTAGTCCAATGTCAAACTTCCAGTTAAGGCGGTATGGAAAAGACTGTCTGCTTGTGAGTTTTGGACAAACTCCACACTCCGTATTCTGGCACGGATGACTTTTTTATGACATGTGCACACAGTGGCTAGACTAGACACAACTCAGTGAGAATGTTGTCATCCTCCACAGCTCAGCACTGTGGACGCAGGTGGGTCCACAGCCTTCATCCATGCTAACTTCAGCGTTCCTGTTCTGGAGAATGCTGCCCTTTTCTGGTGGAACCTCCATCGGAACGGTCAAGGAGATGGGGACACTCTGCATGCTGGCTGCCCTGTCCTTGTTGGGGACAAATGGGTGGCTAACAAATGGATCCATGAGTATGGCCAGGAGTTCCAGAGACGCTGTAGCCCCAATCCTgaggagtgagaagagagaaAGCAGCTGCTGGGACCGCTTGGAGTACAAGAGCCAGTCTCCACAATGGAGCCGCGCGCACCACgcaggcagagcgagagagggaaggaatGAGAGAGGGCATGAGAGAGCGCTAGCGGCTGGGGGAGGGGAAGGCAACCAAGGAGCAGCCTGCATCTGTGATTGGAGCTTCAGGCCCAAGGGAATAAGGAGCACAGACA

Function

symbol description
p4ha3 Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including alar plate midbrain region; muscle; optic tectum; retina; and yolk syncytial layer.

NR:

description
prolyl 4-hydroxylase subunit alpha-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965423.1 False 3487 mRNA 0.48 13 20697519 20708634
XM_021587954.2 False 3546 mRNA 0.48 13 20697532 20708634
TU2357640 True 1024 TUCP 0.47 3 20704929 20707420

Neighbor

gene id symbol gene type direction distance location
or129-1 LOC106581076 coding upstream 374 20696180 ~ 20697145 (+)
LOC110507123 LOC106581088 coding upstream 20818 20675451 ~ 20676701 (+)
LOC118944642 NA coding upstream 25923 20671089 ~ 20671596 (+)
rrp8 LOC106581208 coding upstream 227228 20465522 ~ 20470291 (+)
dhx40 dhx40 coding upstream 232087 20453137 ~ 20465432 (+)
c2cd3 c2cd3 coding downstream 8415 20717049 ~ 20740563 (+)
LOC110507746 LOC106581201 coding downstream 32309 20740943 ~ 20744260 (+)
camkk1b LOC106581199 coding downstream 45583 20754217 ~ 20775966 (+)
si:ch211-105f12.2 LOC106581198 coding downstream 93080 20801714 ~ 20804283 (+)
LOC110507750 dhr11 coding downstream 127988 20836622 ~ 20839521 (+)
G2061490 NA non-coding upstream 36517 20660079 ~ 20661002 (+)
G2061394 NA non-coding upstream 141981 20554331 ~ 20555538 (+)
G2061378 NA non-coding upstream 195433 20501861 ~ 20502086 (+)
G2061375 NA non-coding upstream 204336 20492780 ~ 20493183 (+)
G2061373 dnhd1 non-coding upstream 206356 20490940 ~ 20491163 (+)
G2061538 NA non-coding downstream 40116 20748750 ~ 20748949 (+)
G2061552 143g2 non-coding downstream 80382 20789016 ~ 20792962 (+)
G2061579 NA non-coding downstream 114794 20823428 ~ 20823896 (+)
G2061675 NA non-coding downstream 297719 21006353 ~ 21006589 (+)
G2062371 NA non-coding downstream 370544 21079178 ~ 21091364 (+)
G2061226 NA other upstream 390911 20305382 ~ 20306608 (+)
LOC110507725 LOC106581066 other upstream 637551 20058224 ~ 20059968 (+)
G2059777 LOC106581039 other upstream 1502335 19193457 ~ 19195184 (+)
G2059714 NA other upstream 1605247 19091947 ~ 19092272 (+)
G2059435 NA other upstream 2102677 18571099 ~ 18594842 (+)
G2062402 NA other downstream 436577 21145211 ~ 21146366 (+)
G2062531 NA other downstream 571526 21280160 ~ 21281860 (+)
LOC110507128 LOC106581176 other downstream 714078 21420062 ~ 21437148 (+)
G2062912 LOC106612935 other downstream 989436 21698070 ~ 21720726 (+)
G2062917 NA other downstream 1001264 21709898 ~ 21723142 (+)

Expression


Co-expression Network