LOC110507754 (LOC106581192)


Basic Information

Item Value
gene id LOC110507754
gene name LOC106581192
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 20913520 ~ 20924130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587965.2
AGGCCCTGGTATGTTGCCACTGTTCCCCCCTCACTTCCCCAACTGGGCCAGAGAGGCCAGCTGTGGGGAGTGTGTGTGCTCTGTTTATGGAAAAAGTGTAGGGGGGAGCAAGGGGGAGAACAAGACAGTGGTTTATGGAGCAGCACAGTTTCTCAGTAAGTGAGGGAGTGTTAGTTGGCTGTTAGGCTAAATTAATTAGTTGATTTGCTTTTCCATTTTAGTGAGAGTTTCAGAGCTGTGGTCTCTGTGGCTACCACCAAACTCTGTCAAAGTTGACAAATGTTTGTGTATCAAACCTCAAATTCACATTTTATACCGCCTGCTCTGTGACTGTGACTATTTCTCCAGCCTGACCCCTTCACATTTTATACAGCCTGCTCTGTGACGGTGACTATTTATCCAGAGAAACAACAAAGAACATTGTTTCCTAGTAATGATTTAAGTTACAACGTTACACTCTATACCCTAATAATGTTTTTAGCCCTGTCATATAGTTCAACTTTCTTGTTTGTGTTAAGTAAGATGTGGCCCCTCCTTGATTCTCTGGTTTTCTGGAAGCAGGCCACCCACACCactccctctccaccactcccccttctctctagtCATAGACAGAGACAAGCAGACTGGTTGAGTGGCAACACACTACGAGAGGGGGGAAAAGATCTGTAGAATTGAATGAGCTGTTTTAGCTAGTCTCCCCCTCTGAGGCCGGGAAGTAGAGGAAAACGTGAGAAACGCTGCTTCTATTCTCTGAGTAGTTCTGAAACGAGCACGAGGGGTAAAGACCGCATCTCTAAAAACGACTTCCTTCAAACCCCTGGAACTGTGACTGTCCTGAGGAGAACACTCCCCTCACACACGCCCCAACTGACCGTGGAGGCGTGAGAAGAGCCGTGGAGAGGAGCAGCAGACGAAGCACAACAAGGAAGAAAGtaaaaaggagagggggaggagaagatggaggccTTGCTTCCTGTGTTGCAGCGACACCCTGGAATGTCTGTGTTGGTGTGCGCTCTGATGTTCCGGGTGGCCCACCGACTACTACAGAATCTGCCTGTGCCCAAAGCGGTAGCAGTGGATGACTTCCGCTCCTGGAAGTGGAGGAACCTCTCGGTCTCTATGGTCCACTCCCTCCTGACAGGGACTTGGGCTATGACCTGTGTGATCATTTCCCCTGAGTTGGCAACCAACATTCACTCCTTCTACACGGCCCCGGCCTACATGCTCATCTGCATCTCATCAGGATACTTTGTACAAGATGCAGGTGACATCATTCTAACTGGACATGCAAGAGGATCCTGGGAGTTCTTAATTCATCATGTTCTGGTGCTCTGGTGCTTCCTGTATTCTCTGTACTCACACCTCTACGTGGCCGGTGCTGTGGTGGCTCTCTTTGTGGAGGTTAACAGTGTCACCCTGCATTTGAGGCTAATGCTGAAGCTAGCATCACAGCAGTCGTCCCCTCTGTACCAAATCAATAAGTTCCTCAACCTCTTCACCTACATCGTCTTCCGCCTCAGCGCACAGTTCTACCTCACATATTACATTGTACAGAACTACTCCTGGATGGACAAAGGAGGCTACTTCCTGGTTACCATGACTCTCATGAACACCATGATCCTGATCTACTTTTATCGTCTTCTCCGCGCCGACTTCTTCCCCCGGAGCAGGGCTCACATGGAGCAAAATGGCACCCACAACAACGTCAAAAAGTTCCTCGCTGAATGACACCGATAGTGACATGACCGTATACCTGATGTTGTGTTTGGTGTGTTTGTTCGGTTACACATCTCATCGCATTGTGTCAAGCTGtgactttattattattattattattataacaacaacaaaaaagctctCTCAAAGGCTCGTGTTGTCGTGAGAGGCGGCCAGGAAAGGATGTGGACAGTGGTACATGCCCTATAGTGATGATTATGCCCACTGTGACTGAAGATCCCTCACTCACACTAACTGGGCAGCATACAGTGAGAGACTGGTCTGTTCACACTGACTGGGAGAATCCTACTAAATTACTTCCAGGATACTGTGCCACTTTTGCTTCTGATCATAGCTATTACAATTGTTAACAATATAGGAATTTACATGATTCATGTGGAATGCTCTTTTACAGAAAAAATGCTAACAATCATACATGCATACAGTAGAGAAACAAACTGCCAAGGATAACAGGGACCACCTTGGTTGCTGTACATCCCACCCCACAAATTCTGTCAGGTTTGGCTTAGCAACATAGTTTTATTGAAATTTCCACTAATAGGATTTTGTAAATGTACTATAATACAATCAATATCTGACACTAA
>XM_021587966.2
acaaacaagcactgagctaggctgaaacacctgcattttggagctgccttactcaggAAAGCAAAAATAAACCATGATTGTTttcagctttattaactcatttttttaaaagtaattgtttgcaaactgatatgtggcAGATTTATTTCTGTCAATATTCAACCCTAGTTTCAACCCTAGTTTAAGGGACTCATTGTCCCATTCTCTCCACTTAACCCTAGACTTAGTTTTCATGTGTCCATGTTGAACTTTGAATCTCTGGGAATGAGCAACATACCAAAATAACATGGAGACTAGACACAACCACATTTTGGCTTAATTAGGGTGCCAGTGTACTAAGGTCTTGAATACCAAGATTGTAAGGGCTAATGATAACATAATGGGTCTAAGAGAGAATGGCACTGAGCGAATGGCTGTTTTAACTACAATAGCATTATCAATACAAGTGCAACAGGTTAGTTCTTGAACGCACCCCTGTTGCCCTGTCAGCAGCAGGTGTGTGCAATTGTAATTAAGGTTGGGGCTTCCAAGTAGGCCTGCCTTGTGTATACAATCATGGCATTTTGTACCATTCAGGAATTTCCCCTTGACCTTGTGAAGGTTATTGTATGAGAGGAGGACAAGAGTGGGGGTGTTGTGCTTTAGTTCAAATTCTATGGATTAAGAGCTGCCACCCACACCactccctctccaccactcccccttctctctagtCATAGACAGAGACAAGCAGACTGGTTGAGTGGCAACACACTACGAGAGGGGGGAAAAGATCTGTAGAATTGAATGAGCTGTTTTAGCTAGTCTCCCCCTCTGAGGCCGGGAAGTAGAGGAAAACGTGAGAAACGCTGCTTCTATTCTCTGAGTAGTTCTGAAACGAGCACGAGGGGTAAAGACCGCATCTCTAAAAACGACTTCCTTCAAACCCCTGGAACTGTGACTGTCCTGAGGAGAACACTCCCCTCACACACGCCCCAACTGACCGTGGAGGCGTGAGAAGAGCCGTGGAGAGGAGCAGCAGACGAAGCACAACAAGGAAGAAAGtaaaaaggagagggggaggagaagatggaggccTTGCTTCCTGTGTTGCAGCGACACCCTGGAATGTCTGTGTTGGTGTGCGCTCTGATGTTCCGGGTGGCCCACCGACTACTACAGAATCTGCCTGTGCCCAAAGCGGTAGCAGTGGATGACTTCCGCTCCTGGAAGTGGAGGAACCTCTCGGTCTCTATGGTCCACTCCCTCCTGACAGGGACTTGGGCTATGACCTGTGTGATCATTTCCCCTGAGTTGGCAACCAACATTCACTCCTTCTACACGGCCCCGGCCTACATGCTCATCTGCATCTCATCAGGATACTTTGTACAAGATGCAGGTGACATCATTCTAACTGGACATGCAAGAGGATCCTGGGAGTTCTTAATTCATCATGTTCTGGTGCTCTGGTGCTTCCTGTATTCTCTGTACTCACACCTCTACGTGGCCGGTGCTGTGGTGGCTCTCTTTGTGGAGGTTAACAGTGTCACCCTGCATTTGAGGCTAATGCTGAAGCTAGCATCACAGCAGTCGTCCCCTCTGTACCAAATCAATAAGTTCCTCAACCTCTTCACCTACATCGTCTTCCGCCTCAGCGCACAGTTCTACCTCACATATTACATTGTACAGAACTACTCCTGGATGGACAAAGGAGGCTACTTCCTGGTTACCATGACTCTCATGAACACCATGATCCTGATCTACTTTTATCGTCTTCTCCGCGCCGACTTCTTCCCCCGGAGCAGGGCTCACATGGAGCAAAATGGCACCCACAACAACGTCAAAAAGTTCCTCGCTGAATGACACCGATAGTGACATGACCGTATACCTGATGTTGTGTTTGGTGTGTTTGTTCGGTTACACATCTCATCGCATTGTGTCAAGCTGtgactttattattattattattattataacaacaacaaaaaagctctCTCAAAGGCTCGTGTTGTCGTGAGAGGCGGCCAGGAAAGGATGTGGACAGTGGTACATGCCCTATAGTGATGATTATGCCCACTGTGACTGAAGATCCCTCACTCACACTAACTGGGCAGCATACAGTGAGAGACTGGTCTGTTCACACTGACTGGGAGAATCCTACTAAATTACTTCCAGGATACTGTGCCACTTTTGCTTCTGATCATAGCTATTACAATTGTTAACAATATAGGAATTTACATGATTCATGTGGAATGCTCTTTTACAGAAAAAATGCTAACAATCATACATGCATACAGTAGAGAAACAAACTGCCAAGGATAACAGGGACCACCTTGGTTGCTGTACATCCCACCCCACAAATTCTGTCAGGTTTGGCTTAGCAACATAGTTTTATTGAAATTTCCACTAATAGGATTTTGTAAATGTACTATAATACAATCAATATCTGACACTAA
>TU2358439
AAGCAGACTGGTTGAGTGGCAACACACTACGAGAGGGGGGAAAAGATCTGTAGAATTGAATGAGCTGTTTTAGCTAGTCTCCCCCTCTGAGGCCGGGAAGTAGAGGAAAACGTGAGAAACGCTGCTTCTATTCTCTGAGTAGTTCTGAAACGAGCACGAGGGGTAAAGACCGCATCTCTAAAAACGACTTCCTTCAAACCCCTGGAACTGTGACTGTCCTGAGGAGAACACTCCCCTCACACACGCCCCAACTGACCGTGGAGGCGTGAGAAGAGCCGTGGAGAGGAGCAGCAGACGAAGCACAACAAGGAAGAAAGtaaaaaggagagggggaggagaagatggaggccTTGCTTCCTGTGTTGCAGCGACACCCTGGAATGTCTGTGTTGGTGTGCGCTCTGATGTTCCGGGTGGCCCACCGACTACTACAGAATCTGCCTGTGCCCAAAGCGGTAGCAGTGGATGACTTCCGCTCCTGGAAGTGGAGGAACCTCTCGGTCTCTATGGTCCACTCCCTCCTGACAGGGACTTGGGCTATGACCTGTGTGATCATTTCCCCTGAGTTGGCAACCAACATTCACTCCTTCTACACGGCCCCGGCCTACATGCTCATCTGCATCTCATCAGGATACTTTGTACAAGATGCAGGTGACATCATTCTAACTGGACATGCAAGAGGATCCTGGGAGTTCTTAATTCATCATGTTCTGGTGCTCTGGTGCTTCCTGTATTCTCTGTACTCACACCTCTACGTGGCCGGTGCTGTGGTGGCTCTCTTTGTGGAGGTTAACAGTGTCACCCTGCATTTGAGGCTAATGCTGAAGCTAGCATCACAGCAGTCGTCCCCTCTGTACCAAATCAATAAGTTCCTCAACCTCTTCACCTACATCGTCTTCCGCCTCAGCGCACAGTTCTACCTCACATATTACATTGTACAGAACTACTCCTGGATGGACAAAGGAGGCTACTTCCTGGTTACCATGACTCTCATGAACACCATGATCCTGATCTACTTTTATCGTCTTCTCCGCGCCGACTTCTTCCCCCGGAGCAGGGCTCACATGGAGCAAAATGGCACCCACAACAACGTCAAAAAGTTCCTCGCTGAATG

Function

NR:

description
calfacilitin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587965.2 False 2327 mRNA 0.47 4 20913520 20922994
XM_021587966.2 False 2435 mRNA 0.45 5 20913520 20924130
TU2358439 True 1114 TUCP 0.51 4 20914114 20922375

Neighbor

gene id symbol gene type direction distance location
rab34a LOC106612797 coding downstream 5348 20900228 ~ 20908172 (-)
proca1 LOC106581195 coding downstream 36292 20872760 ~ 20877228 (-)
ca4b LOC106581086 coding downstream 84284 20817085 ~ 20829236 (-)
LOC110507748 NA coding downstream 108426 20804347 ~ 20805094 (-)
ywhag2 143g2 coding downstream 116260 20790688 ~ 20797260 (-)
LOC110507761 LOC106581184 coding upstream 222987 21147117 ~ 21193859 (-)
LOC110507762 LOC106581182 coding upstream 279827 21203957 ~ 21228344 (-)
LOC110507765 dynll2a coding upstream 346037 21270167 ~ 21273576 (-)
LOC110507763 sfrs1 coding upstream 349190 21273320 ~ 21278816 (-)
LOC110507766 aldoc coding upstream 355998 21280128 ~ 21288075 (-)
G2062239 NA non-coding downstream 43243 20868565 ~ 20870277 (-)
G2062196 NA non-coding downstream 93688 20819418 ~ 20819832 (-)
G2062162 LOC106581199 non-coding downstream 157225 20754499 ~ 20756295 (-)
G2062144 c2cd3 non-coding downstream 186565 20726661 ~ 20726955 (-)
G2062308 NA non-coding upstream 55841 20979971 ~ 20982545 (-)
G2062338 NA non-coding upstream 115516 21039646 ~ 21040038 (-)
G2062340 NA non-coding upstream 118633 21042763 ~ 21042979 (-)
G2062341 NA non-coding upstream 121873 21046003 ~ 21046226 (-)
G2062343 NA non-coding upstream 125271 21049401 ~ 21049682 (-)
G2058724 NA other downstream 2990768 17922342 ~ 17922752 (-)
LOC110507661 LOC106581010 other downstream 3443699 17464437 ~ 17481646 (-)
LOC110507646 LOC106612894 other downstream 3913735 16756597 ~ 17064214 (-)
G2056115 NA other downstream 5537005 15376215 ~ 15376515 (-)
LOC110507082 LOC106580920 other downstream 6378280 14532256 ~ 14719525 (-)
LOC110507126 kiaa0100 other upstream 373535 21295518 ~ 21311437 (-)
LOC110507789 LOC106581159 other upstream 1788533 22712654 ~ 22718153 (-)
zbtb16b LOC106581153 other upstream 1880128 22780311 ~ 22808183 (-)
G2065425 NA other upstream 2779033 23703163 ~ 23705965 (-)

Expression


Co-expression Network