LOC110507765 (dynll2a)


Basic Information

Item Value
gene id LOC110507765
gene name dynll2a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 21270167 ~ 21273576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587991.2
CCGTACAGCTGAGTTTGTGAGGAGGCCTTCTCTACCTCACCGTGTATTGTTAACGATGCATTGTGGGATGAAATAAGATGCTGGCAGAGAAGAGCTGCTAGAAAATGCTCAAAACACAAGAAGAGGTGGCAGCTCAGCCAATGGCAGGATAAGTTGTGTAGGGCGGGGGAGGTATTTTACGAGGGCAGTTTCCCCACATATTTGCTTTGAGTAAATCTTGTAAAATAATTTGTCGCAGCACGATCCATCAAGTAAGCAAAGCTTGATATCCACTAAGGGGAATTACTTGATTACGAAGGGGATAGTATCAGCATCTCCTAAATAAGGCATGACTGACAGGAAGGCAGTAATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTGGACTGTGCTACCCAGGCCATGGAGAAGTACAATATAGAAAAGGACATTGCAGCCTACATAAAGAAGGAATTTGACAAGAAGTATAACCCTACATGGCATTGCATTGTTGGAAGGAACTTCGGCAGCTACGTCACTCATGAGACAAAGCATTTCATCTACTTCTACTTAGGGCAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGTTCTCGTTGAGGCCTGGAGTGCCTCTCTTCCCAACATGGACTGTAATGCACTGGTGGCTGATGTCACAACTTCCCATACACTTCAAATATTAAAATTAAAACATACCATGATACACAACTGGCTGTGCGCAACTGCATGGACTAAGATGTACCATATTTAATGTGTATATGTTACAGTAAAAATATTACTTTTCACTTGTTTCCATAAAATGCAACTGGAAGATTTTTGTTAATGCTACATTTTGTTATAATTAATTTGTAAATGCTTTAACAGTGGCCTTTGATTGTATAATAAAGGAAAGCTAGAGATTGTAGTTGTGCATCTGCTTTCCCCCAGAGCTGTTTTGTTTTTAGTGACTTCTGTCCTGTCATTTTAAATGTGTTTAGTTGCTCAAGATGTTGAAGTACTACAGCAGTTTGTAATACCTGTATATTGCCAGAGGTACAAGTGAGCCTAGCGCAGTGTATTTGGACATGTCGTCCCAGATTTGCAACTGCTGTTATCGATCCCATTATCTCACAATCTTATTTCATGAGCTGGACTGTCATCTGGCATTTTTCTATTGCTATTTGTATTCCAAGCTAGTAGAGTTCCTATGCTAACTTGTTTAGATGCTTGGAGGTTCCATTTGCAGAGGGTTGACACCATCCACACTTGAACCTATTCTGGCTGTGCAACAAAGGACTGAATGTTGGCGTTCAGGTCCTTTTGTAGACTTTCAAATTGTAAGAAAATATTAATCATTagtggttacattttttttactgtaTTTGCTATGTTGGTTGTTTCTGTTTATAGTATAATGCAAATTGCTGTATGATTTGCACAGACGTACCTCTTATTGTTCTCAGTTCATGGGCACCTGAACTCAATTGCACTTCACTAAAGGGATATTTCGGCAATGAGGCCCTAGATCTACTCTCCCAGAGTCCGATTCACTTGATACCATTATGTGGGGGAAGTTGGTAGTTTCGTGAGCTACCGCTAACTAGCGTTGGTGTAATGACTTGAAGTTGCTAGTAGTTAGCGCGATGACTGGAAGTTTATGGTTAACAGATCAAAGTTATAATTGACTCCCGGCAAGTAGCTAAAGGGCCTCGTTACCAAAATGCTGAAGTGTCCCTTTTAAAGGTGTCCAGTAAACTTGGACATTTTAATATAGTCAATGTATAATCAAGCCAATGATTAAACGTTTCATTGTATCCTGA
>XM_021587992.2
TTTTTGAATGGCCCAGTTTATTTCAATTTTTGAGCGGTAAATATGCGCAGAGTCAAAGGATAAGGATTATTTACGTTTTTGGAGTAAGAAAAGGAAACTGAGGACCAGGAAGTTGGATCAAAGGATGCAAGGAGTCTGGCATGACTGACAGGAAGGCAGTAATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTGGACTGTGCTACCCAGGCCATGGAGAAGTACAATATAGAAAAGGACATTGCAGCCTACATAAAGAAGGAATTTGACAAGAAGTATAACCCTACATGGCATTGCATTGTTGGAAGGAACTTCGGCAGCTACGTCACTCATGAGACAAAGCATTTCATCTACTTCTACTTAGGGCAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGTTCTCGTTGAGGCCTGGAGTGCCTCTCTTCCCAACATGGACTGTAATGCACTGGTGGCTGATGTCACAACTTCCCATACACTTCAAATATTAAAATTAAAACATACCATGATACACAACTGGCTGTGCGCAACTGCATGGACTAAGATGTACCATATTTAATGTGTATATGTTACAGTAAAAATATTACTTTTCACTTGTTTCCATAAAATGCAACTGGAAGATTTTTGTTAATGCTACATTTTGTTATAATTAATTTGTAAATGCTTTAACAGTGGCCTTTGATTGTATAATAAAGGAAAGCTAGAGATTGTAGTTGTGCATCTGCTTTCCCCCAGAGCTGTTTTGTTTTTAGTGACTTCTGTCCTGTCATTTTAAATGTGTTTAGTTGCTCAAGATGTTGAAGTACTACAGCAGTTTGTAATACCTGTATATTGCCAGAGGTACAAGTGAGCCTAGCGCAGTGTATTTGGACATGTCGTCCCAGATTTGCAACTGCTGTTATCGATCCCATTATCTCACAATCTTATTTCATGAGCTGGACTGTCATCTGGCATTTTTCTATTGCTATTTGTATTCCAAGCTAGTAGAGTTCCTATGCTAACTTGTTTAGATGCTTGGAGGTTCCATTTGCAGAGGGTTGACACCATCCACACTTGAACCTATTCTGGCTGTGCAACAAAGGACTGAATGTTGGCGTTCAGGTCCTTTTGTAGACTTTCAAATTGTAAGAAAATATTAATCATTagtggttacattttttttactgtaTTTGCTATGTTGGTTGTTTCTGTTTATAGTATAATGCAAATTGCTGTATGATTTGCACAGACGTACCTCTTATTGTTCTCAGTTCATGGGCACCTGAACTCAATTGCACTTCACTAAAGGGATATTTCGGCAATGAGGCCCTAGATCTACTCTCCCAGAGTCCGATTCACTTGATACCATTATGTGGGGGAAGTTGGTAGTTTCGTGAGCTACCGCTAACTAGCGTTGGTGTAATGACTTGAAGTTGCTAGTAGTTAGCGCGATGACTGGAAGTTTATGGTTAACAGATCAAAGTTATAATTGACTCCCGGCAAGTAGCTAAAGGGCCTCGTTACCAAAATGCTGAAGTGTCCCTTTTAAAGGTGTCCAGTAAACTTGGACATTTTAATATAGTCAATGTATAATCAAGCCAATGATTAAACGTTTCATTGTATCCTGA
>TU2358911
GGGGGAGGTATTTTACGAGGGCAGTTTCCCCACATATTTGCTTTGAGTAAATCTTGTAAAATAATTTGTCGCAGCACGATCCATCAAGTAAGCAAAGCTTGATATCCACTAAGGGGAATTACTTGATTACGAAGGGGATAGTATCAGCATCTCCTAAATAAGGCATGACTGACAGGAAGGCAGTAATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTGGACTGTGCTACCCAGGCCATGGAGAAGTACAATATAGAAAAGGACATTGCAGCCTACATAAAGAAGGAATTTGACAAGAAGTATAACCCTACATGGCATTGCATTGTTGGAAGGAACTTCGGCAGCTACGTCACTCATGAGACAAAGCATTTCATCTACTTCTACTTAGGGCAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGTTCTCGTTGAGGCCTGGAGTGCCTCTCTTCCCAACATGGACTGTAATGCACTGGTGGCTGATGTCACAACTTCCCATACACTTCAAATATTAAAATTAAAACATACCATGATACACAACTGGCTGTGCGCAACTGCATGGACTAAGATGTACCATATTTAATGTGTATATGTTACAGTAAAAATATTACTTTTCACTTGTTTCCATAAAATGCAACTGGAAGATTTTTGTTAATGCTACATTTTGTTATAATTAATTTGTAAATGCTTTAACAGTGGCCTTTGATTGTATAATAAAGGAAAGCTAGAGATTGTAGTTGTGCATCTGCTTTCCCCCAGAGCTGTTTTGTTTTTAGTGACTTCTGTCCTGTCATTTTAAATGTGTTTAGTTGCTCAAGATGTTGAAGTACTACAGCAGTTTGTAATACCTGTATATTGCCAGAGGTACAAGTGAGCCTAGCGCAGTGTATTTGGACATGTCGTCCCAGATTTGCAACTGCTGTTATCGATCCCATTATCTCACAATCTTATTTCATGAGCTGGACTGTCATCTGGCATTTTTCTATTGCTATTTGTATTCCAAGCTAGTAGAGTTCCTATGCTAACTTGTTTAGATGCTTGGAGGTTCCATTTGCAGAGGGTTGACACCATCCACACTTGAACCTATTCTGGCTGTGCAACAAAGGACTGAATGTTGGCGTTCAGGTCCTTTTGTAGACTTTCAAATTGTAAGAAAATATTAATCATTagtggttacattttttttactgtaTTTGCTATGTTGGTTGTTTCTGTTTATAGTATAATGCAAATTGCTGTATGATTTGCACAGACGTACCTCTTATTGTTCTCAGTTCATGGGCACCTGAACTCAATTGCACTTCACTAAAGGGATATTTCGGCAATGAGGCCCTAGATCTACTCTCCCAGAGTCCGATTCACTTGATACCATTATGTGGGGGAAGTTGGTAGTTTCGTGAGCTACCGCTAACTAGCGTTGGTGTAATGACTTGAAGTTGCTAGTAGTTAGCGCGATGACTGGAAGTTTATGGTTAACAGATCAAAGTTATAATTGACTCCCGGCAAGTAGCTAAAGGGCCTCGTTACCAAAATGCTGAAGTGTCCCTTTTAAAGGTGTCCAGTAAACTTGGACATTTTAATATAGTCAATGTATAATCAAGCCAATGATTAAACGTTTCATTGTATCCTGA
>TU2358915
AACGATGCATTGTGGGATGAAATAAGATGCTGGCAGAGAAGAGCTGCTAGAAAATGCTCAAAACACAAGAAGAGGTGGCAGCTCAGCCAATGGCAGGATAAGTTGTGTAGGGCGGGGGAGGTATTTTACGAGGGCAGTTTCCCCACATATTTGCTTTGAGTAAATCTTGTAAAATAATTTGTCGCAGCACGATCCATCAAGTAAGCAAAGCTTGATATCCACTAAGGGGAATTACTTGATTACGAAGGGGATAGTATCAGCATCTCCTAAATAAGGCATGACTGACAGGAAGGCAGTAATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTGGACTGTGCTACCCAGGCCATGGAGAAGTACAATATAGAAAAGGACATTGCAGCCTACATAAAGAAGGAATTTGACAAGAAGTATAACCCTACATGGCATTGCATTGTTGGAAGGAACTTCGGCAGCTACGTCACTCATGAGACAAAGCATTTCATCTACTTCTACTTAGGGCAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGTTCTCGTTGAGGCCTGGAGTGCCTCTCTTCCCAACATGGACTGTAATGCACTGGTGGCTGATGTCACAACTTCCCATACACTTCAAATATTAAAATTAAAACATACCATGATACACAACTGGCTGTGCGCAACTGCATGGACTAAGATGTACCATATTTAATGTGTATATGTTACAGTAAAAATATTACTTTTCACTTGTTTCCATAAAATGCAACTGGAAGATTTTTGTTAATGCTACATTTTGTTATAATTAATTTGTAAATGCTTTAACAGTGGCCTTTGATTGTATAATAAAGGAAAGCTAGAGATTGTAGTTGTGCATCTGCTTTCCCCCAGAGCTGTTTTGTTTTTAGTGACTTCTGTCCTGTCATTTTAAATGTGTTTAGTTGCTCAAGATGTTGAAGTACTACAGCAGTTTGTAATACCTGTATATTGCCAGAGGTACAAGTGAGCCTAGCGCAGTGTATTTGGACATGTCGTCCCAGATTTGCAACTGCTGTTATCGATCCCATTATCTCACAATCTTATTTCATGAGCTGGACTGTCATCTGGCATTTTTCTATTGCTATTTGTATTCCAAGCTAGTAGAGTTCCTATGCTAACTTGTTTAGATGCTTGGAGGTTCCATTTGCAGAGGGTTGACACCATCCACACTTGAACCTATTCTGGCTGTGCAACAAAGGACTGAATGTTGGCGTTCAGGTCCTTTTGTAGACTTTCAAATTGTAAGAAAATATTAATCATTagtggttacattttttttactgtaTTTGCTATGTTGGTTGTTTCTGTTTATAGTATAATGCAAATTGCTGTATGATTTGCACAGACGTACCTCTTATTGTTCTCAGTTCATGGGCACCTGAACTCAATTGCACTTCACTAAAGGGATATTTCGGCAATGAGGCCCTAGATCTACTCTCCCAGAGTCCGATTCACTTGATACCATTATGTGGGGGAAGTTGGTAGTTTCGTGAGCTACCGCTAACTAGCGTTGGTGTAATGACTTGAAGTTGCTAGTAGTTAGCGCGATGACTGGAAGTTTATGGTTAACAGATCAAAGTTATAATTGACTCCCGGCAAGTAGCTAAAGGGCCTCGTTACCAAAATGCTGAAGTGTCCCTTTTAAAGGTGTCCAGTAAACTTGGACATTTTAATATAGTCAATGTATAATCAAGCCAATGATTAAACGTTTCATTGTATCCTGA

Function

symbol description
dynll2a Predicted to enable cytoskeletal motor activity. Predicted to act upstream of or within microtubule-based process. Located in P granule and nucleus. Is expressed in central nervous system; hindbrain; lateral line ganglion; polster; and rhombomere. Orthologous to human DYNLL2 (dynein light chain LC8-type 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587991.2 False 1808 mRNA 0.41 3 21270167 21272852
XM_021587992.2 False 1620 mRNA 0.40 3 21270167 21273576
TU2358911 False 1644 TUCP 0.40 3 21270167 21272688
TU2358915 True 1757 TUCP 0.40 3 21270167 21272801

Neighbor

gene id symbol gene type direction distance location
LOC110507762 LOC106581182 coding downstream 41823 21203957 ~ 21228344 (-)
LOC110507761 LOC106581184 coding downstream 76308 21147117 ~ 21193859 (-)
LOC110507754 LOC106581192 coding downstream 346037 20913520 ~ 20924130 (-)
rab34a LOC106612797 coding downstream 361995 20900228 ~ 20908172 (-)
proca1 LOC106581195 coding downstream 392939 20872760 ~ 20877228 (-)
LOC110507766 aldoc coding upstream 6552 21280128 ~ 21288075 (-)
LOC118936433 NA coding upstream 17155 21289993 ~ 21295103 (-)
LOC110507126 kiaa0100 coding upstream 21942 21295518 ~ 21311437 (-)
LOC110507767 NA coding upstream 37863 21311439 ~ 21313774 (-)
LOC110507769 LOC106581179 coding upstream 44889 21318465 ~ 21324425 (-)
G2062513 NA non-coding downstream 33117 21236784 ~ 21237050 (-)
G2062494 NA non-coding downstream 67410 21202398 ~ 21202757 (-)
G2062482 NA non-coding downstream 111331 21158423 ~ 21158836 (-)
G2062478 NA non-coding downstream 125986 21143943 ~ 21144181 (-)
G2062648 NA non-coding upstream 43231 21316807 ~ 21317846 (-)
G2062729 NA non-coding upstream 147590 21421166 ~ 21421491 (-)
G2062646 NA non-coding upstream 148285 21421861 ~ 21422135 (-)
G2062730 LOC106612783 non-coding upstream 148682 21422258 ~ 21422522 (-)
G2058724 NA other downstream 3347415 17922342 ~ 17922752 (-)
LOC110507661 LOC106581010 other downstream 3800346 17464437 ~ 17481646 (-)
LOC110507646 LOC106612894 other downstream 4270382 16756597 ~ 17064214 (-)
G2056115 NA other downstream 5893652 15376215 ~ 15376515 (-)
LOC110507789 LOC106581159 other upstream 1439087 22712654 ~ 22718153 (-)
zbtb16b LOC106581153 other upstream 1530682 22780311 ~ 22808183 (-)
G2065425 NA other upstream 2429587 23703163 ~ 23705965 (-)
G2066096 LOC106581136 other upstream 2490123 23763699 ~ 23765479 (-)
LOC110507763 sfrs1 coding upstream 519 21273320 ~ 21278816 (-)

Expression


Co-expression Network