XLOC_000394


Basic Information

Item Value
gene id XLOC_000394
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33517802 ~ 33518823 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002850
GTTCTCTTTAATCAACAAATGGTCCATACATCAGGCATTTTAGGTCCATACATCATGCTCAGTGATAAATGACCTTATTTAATGTGATACATTGATGTGCTGGGAAAGAAATATGTGGATTGATGTACGACTGGCAGACTGGCGTTAATTAAGATGTGCTCCCATAAATCCTACTCGGTCCTGAACACACTTCAGAGCAGCGGAATAACCCTAGATTTAATGGATTTAACCCATGCATGATGCAGAAGCACATACATTTATACTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002850 True 266 lncRNA 0.39 2 33517802 33518823

Neighbor

gene id symbol gene type direction distance location
XLOC_000393 dhrsx coding upstream 30427 33383644 ~ 33487375 (+)
XLOC_000392 mxra5a coding upstream 183070 33322174 ~ 33334732 (+)
XLOC_000391 prkx coding upstream 234113 33217911 ~ 33283689 (+)
XLOC_000390 BX322647.1 coding upstream 301084 33215241 ~ 33216718 (+)
XLOC_000389 zgc:174320 coding upstream 724158 32791920 ~ 32793644 (+)
XLOC_000395 chmp2bb coding downstream 39732 33558555 ~ 33569245 (+)
XLOC_000396 htr1fb coding downstream 115363 33634186 ~ 33635304 (+)
XLOC_000397 znf654 coding downstream 128859 33647682 ~ 33663705 (+)
XLOC_000398 arl13b coding downstream 149413 33668236 ~ 33694795 (+)
XLOC_000399 nsun3 coding downstream 178347 33697170 ~ 33722780 (+)
XLOC_000388 CU915272.1 non-coding upstream 811575 32706109 ~ 32706227 (+)
XLOC_000386 CU462859.1 non-coding upstream 1003698 32513989 ~ 32514104 (+)
XLOC_000383 BX901898.1 non-coding upstream 1499687 32017437 ~ 32018115 (+)
XLOC_000381 NA non-coding upstream 1505424 32011880 ~ 32012378 (+)
XLOC_000400 CU915566.1 non-coding downstream 216195 33735018 ~ 33735134 (+)
XLOC_000401 CT573012.1 non-coding downstream 448334 33967157 ~ 33967273 (+)
XLOC_000403 dre-mir-734 non-coding downstream 604057 34122880 ~ 34122972 (+)
XLOC_000407 CR848003.1 non-coding downstream 881417 34400240 ~ 34400354 (+)
XLOC_000408 NA non-coding downstream 931836 34450659 ~ 34454447 (+)

Expression


Co-expression Network