thyn1 (thyn1)


Basic Information

Item Value
gene id thyn1
gene name thyn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 23315142 ~ 23317925 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588098.2
gacacgtcacgatgtaacggagggtcagtttttcaacttttctccactactatagagccatttccatgtcgatcaacgcatgaatagaaacgtagttcacacccccgattttgaagtcaacatagtcccattagttttctttgtagcctcgtttgaatgtcgcggttggcacatttgtacggaatgggCGTTCTGAGTTTTATGGTTCCGACCACTTCGATTTGCATCTTTATAACGTACCAGCATGGCACCTAAAATGAGAACCCGTGGAACCACAAGAACACTAGAATCCAGCAACGATGAAGAGACAAAAACTAATGCCCACAGTGAGGACTCCTCATTGGAGGCTGGTCAGGCACTCAGGGGGAAGAGGAAAGGTTCCGGAAAGACTGGAAAACAGGAGAGTTCAAAGGCAAAAAAATCACCTGAACGACCACAGTATTGTCACTGGCTGATGAAGTCAGAGCCAGAGAGCCGCTTGGAAAATGGCATAGATGTCAAGTTTGGGATCGAGGATCTGAAGACTCTTCCCAACCAAACTgggtgttgggatggtgttcggaACTACCAAGCCCGTAACTTTATGCGAGACATGAAAGAGGGGCAGCATGCATTCTTCTACCACAGCAACTGCAAGGAGCCTGGAATAGCTGGAGTTATGAAGATTGTAAAGGAGTCCTATGTGGACCACACTCAGTTTGACAAGAAAGATGTCCATTACGACGCCTCCAGCAAGGCAGACAACCCCAAATGGAGTATGGTTGATGTCCAGTTTGAGAGGATGTTGAAGCGCTTCATTCCTCTGTCTGAGTTGAAGAAGATCCACCTGCAGCACAAGGCCAAAGGCGGGTCCCTGAATGGCATGGCTCTCTTCACCAGGGCCAGGCTGTCTGTCCAGCCCCTCACCAGTGAGGAATTTGAATTTGTCCTGAGTTTGGAGGACAATGACCCACTGTGAAGATTTTGACAAGATGACCTGGAGAGAAGTTTTCCTGTCTTGTGTATGATGATGCTGCTGCTAATATGTTTACTGTAGGAGAGATCTATTGAACCATTATGCTTGTATTAAATGGAAATTGTCTCAAGGTTTCTGTGTTTGTCAAGAGACAGCCTGGAGTTTATTTCTAATATTAAAGAGGTATTATTGACAGTT
>XM_021588099.2
aggtggagagagattgtaagacagaaatcgTTGCTTTATGCGTGGTGTatgttacgacatgacacgtcacgatgtaacggaggCGTTCTGAGTTTTATGGTTCCGACCACTTCGATTTGCATCTTTATAACGTACCAGCATGGCACCTAAAATGAGAACCCGTGGAACCACAAGAACACTAGAATCCAGCAACGATGAAGAGACAAAAACTAATGCCCACAGTGAGGACTCCTCATTGGAGGCTGGTCAGGCACTCAGGGGGAAGAGGAAAGGTTCCGGAAAGACTGGAAAACAGGAGAGTTCAAAGGCAAAAAAATCACCTGAACGACCACAGTATTGTCACTGGCTGATGAAGTCAGAGCCAGAGAGCCGCTTGGAAAATGGCATAGATGTCAAGTTTGGGATCGAGGATCTGAAGACTCTTCCCAACCAAACTgggtgttgggatggtgttcggaACTACCAAGCCCGTAACTTTATGCGAGACATGAAAGAGGGGCAGCATGCATTCTTCTACCACAGCAACTGCAAGGAGCCTGGAATAGCTGGAGTTATGAAGATTGTAAAGGAGTCCTATGTGGACCACACTCAGTTTGACAAGAAAGATGTCCATTACGACGCCTCCAGCAAGGCAGACAACCCCAAATGGAGTATGGTTGATGTCCAGTTTGAGAGGATGTTGAAGCGCTTCATTCCTCTGTCTGAGTTGAAGAAGATCCACCTGCAGCACAAGGCCAAAGGCGGGTCCCTGAATGGCATGGCTCTCTTCACCAGGGCCAGGCTGTCTGTCCAGCCCCTCACCAGTGAGGAATTTGAATTTGTCCTGAGTTTGGAGGACAATGACCCACTGTGAAGATTTTGACAAGATGACCTGGAGAGAAGTTTTCCTGTCTTGTGTATGATGATGCTGCTGCTAATATGTTTACTGTAGGAGAGATCTATTGAACCATTATGCTTGTATTAAATGGAAATTGTCTCAAGGTTTCTGTGTTTGTCAAGAGACAGCCTGGAGTTTATTTCTAATATTAAAGAGGTATTATTGACAGTT

Function

symbol description
thyn1 Predicted to be active in nucleus. Orthologous to human THYN1 (thymocyte nuclear protein 1).

NR:

description
thymocyte nuclear protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588098.2 False 1153 mRNA 0.46 8 23315142 23317865
XM_021588099.2 True 1048 mRNA 0.46 8 23315142 23317925

Neighbor

gene id symbol gene type direction distance location
igsf9ba LOC106613021 coding downstream 38644 23202397 ~ 23276498 (-)
arhgap32a LOC106581150 coding downstream 117776 23163866 ~ 23197366 (-)
ncam1b LOC106581152 coding downstream 396652 22810667 ~ 22918490 (-)
zbtb16b LOC106581153 coding downstream 506959 22780311 ~ 22808183 (-)
LOC110507792 LOC106581084 coding downstream 536465 22774355 ~ 22778677 (-)
LOC110507816 NA coding upstream 807 23318732 ~ 23319150 (-)
esamb LOC106581146 coding upstream 12097 23330022 ~ 23409999 (-)
hspa8b hsp7c coding upstream 185384 23503309 ~ 23513406 (-)
sytl2b LOC106581144 coding upstream 206738 23524663 ~ 23546366 (-)
picalmb LOC106581143 coding upstream 229648 23547573 ~ 23569211 (-)
G2065128 NA non-coding downstream 115279 23199381 ~ 23199863 (-)
G2065112 NA non-coding downstream 152637 23162221 ~ 23162505 (-)
G2065073 NA non-coding downstream 212533 23097617 ~ 23102609 (-)
G2065069 NA non-coding downstream 222710 23092230 ~ 23092432 (-)
G2065156 NA non-coding upstream 9232 23327157 ~ 23342072 (-)
G2065241 NA non-coding upstream 97185 23415110 ~ 23415476 (-)
G2065311 NA non-coding upstream 183996 23501921 ~ 23502844 (-)
G2065422 NA non-coding upstream 374668 23692593 ~ 23696166 (-)
LOC110507789 LOC106581159 other downstream 597036 22712654 ~ 22718153 (-)
LOC110507126 kiaa0100 other downstream 2011014 21295518 ~ 21311437 (-)
LOC110507765 dynll2a other downstream 2042341 21270167 ~ 21273576 (-)
LOC110507754 LOC106581192 other downstream 2392767 20913520 ~ 20924130 (-)
G2065425 NA other upstream 385238 23703163 ~ 23705965 (-)
G2066096 LOC106581136 other upstream 445774 23763699 ~ 23765479 (-)
G2066126 LOC106581133 other upstream 489813 23807738 ~ 23808909 (-)
pcp4b NA other upstream 818252 24136177 ~ 24181998 (-)
G2068043 NA other upstream 2500714 25818639 ~ 25834101 (-)

Expression


Co-expression Network