LOC110507821 (LOC106581130)


Basic Information

Item Value
gene id LOC110507821
gene name LOC106581130
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 23875335 ~ 23885622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965834.1
AGTGGAGGTCCTTATGTGGACACAGGCAGATCCCAATTGGGACAAGCTTTTAATCATGGTTATAGTGGACATCCACAGTTCTGATAGACCTATCTATGAACAATTTGCGACAAGTAGCTAGTGAATTGGTTGTATAGGGCCATGTTTAAATGGTATGAAATAACTATTCATGCACTGACAGTTAGCTACCAAGAATGACAACTTTAGCGTAAACATTTCGTATGTAATCGCATCTCGTTTAGTGCCCTTTGTCAAGGATTTTGGGCAACACTAAATATCACGTCACATGTTTTTTAGGGTGTAAAATAATTACCTCCATAAAGACTTCTTAACATTTATAACATAATAAACGTAAATTAGGGGTAAATTCCTAGGCTGTCAAGAAAAGCAGTCTACAGCTCAAGATCTGCTATCCAGGATTCTGAATTAATGATGACTCAGATCAACGATTTCATGGACCAGTGCAGCGGCTTTGAATTCAATCTGGACGACTGTGAGAAGATTGAGATATCTGAGGACAACGTCAATCAAGGAACAGAGAACATCAGGCCGGAGTGTTTTGAACTGCTGCGGGTGCTGggaaagggaggctatggaaagGTTTTTCAAGTTCGAAAAGTTGCTGGAGCAGCATCGGGGAAGATATTTGCAATGAAGGTTTTAAAGAAGGCTATGATTGTACGCAATGCTAAGGACACTGCCCATACCAAGGCGGAGAGGAACATCCTGGAGGAAGTGAAGCATCCTTTCATCGTGGATCTCATCTACGCCTTCCAGACGGGGGGAAAGCTGTACCTCATCCTGGAGTACCTCAGCGGTGGAGAGCTGTTTATGCAACTGGAAAGAGAGGGGATATTTATGGAAGACACAGCCTGTTTTTACCTGGCAGAAATCTCCATGGCTCTGGGCCATCTGCACCAGAAAGGCATCATCTATAGAGACCTGAAGCCTGAAAACATCATGCTTAACAACCAAGGCCATGTGAAATTGACTGACTTTGGGCTGTGTAAAGAGTCCATCCACGGCGGCACAGTCACCCATACTTTCTGTGGCACCATAGAGTACATGGCCCCAGAGATCCTGATGAGAAGTGGACATAACAGAGCAGTGGACTGGTGGAGTCTTGGAGCGCTTATGTACGATATGCTGACTGGAGCGCCACCCTTCACTGGTGAAAACAGGAAGAAGACCATTGACAAAATCTTAAAATGCAAGCTGAACCTCCCACCCTACCTCACACAAGAAGCCAGAGATCTCCTGAAAAGGCTGCTGAAGAGAAATGCCTCGTCAAGACTTGGAGCAGGGGCCGGAGATGCTACAGAGGTGCAGGCTCATCCCTTTTTCCGACACATTAACTGGGAAGAGCTCCTGGCCAGGAAAGTGGAGCCTCCATTCAAGCCATTCCTGCAATCCGCTGAAGATGTGAGCCAGTTTGACTCTAAGTTCACCAGCCAGACACCAGTAGACAGCCCAGACGACTCCACGCTGAGTGAAAGCGCTAACCAAGCCTTTCTGGGCTTTACGTATGTTGCTCCATCAGTACTGGAAAACGTCAAGGAAAAATTCTCATTTGAGCCAAAAATCCGCTCACCCCAGCGTTTTTTGGGGAGCCCAAGAACACCAGTCAGCCCTTTCAAGTTCTCTGCTGGTGACATGTGGCCCCGGGGCCCCTTGATGCCCGGCGGATCCTCTCTATGTCTCCAGTCGCCCCAGGAGCAGGTCATGGAGGTGTCCGCCTCAGAACAGATGGAAGTGCAGGCCAGCTCTGAGGCCTCTGCGCCCCTTCCCATCCGCCAGCCTTCGGGAGCCAACCTGTCCCAGTTCAAACAACAGGCCTACCCTGTCATGGCCAAGCGGCCCGAGCATCTACGCATTAACCTATGACCAGCAGCTCATCTTAGAGGATTTAATTTTTTCTTTGTTGATATTTCTtctcttattttttattttttaaatataaagacACTAGAGACTATGAAACATTACATTTCAGttctacacaccatcactacctGAAGTCTCCCTCAGGCTTTCACCTCCAGTGTGCTGCAGCTGAGCTCGGCGGACTGGGCCACTCCCTCAGGTCCCCTTGACCTCTTCACCCTGACCCCTAGCAGGACTGGACCAGCGGGCCGGGGCATCACTTTGAATCTTTAACTTGTTTTTATTACTCCATTCTACCACAAAAAAAGGAATGAGAACATGTATAAAATGTGCAGTATATAAAATATCAATCTAAGTGCTTCTTGTTTGATGATTGAATGCTTATGATGAATTAATTGCTTCCACTGAACACTTGGGAGATTTGACAGTATTTCTTGAAGATTGCTTCCTGGCTCGGAATGAAATCATGAATTATTGTTAATTGAAAATATGATTGGGAGGGTTATCAATAAGCTGAGGTTCTGAACATAGCTTTGTCTTAATACAAAATAAATGCATCTACTGTGCTATATCAATGATGGATAAATTCATGAGGGCCtcaataaaaacaaatgtttacTTTTTACATTC
>XM_021588108.2
GTGTAGTAGCCGGTTATGGCCGCTGCGATGTGTGTTTGTCCATGAGGCGGGGAGCGCGAGCTATTTTCACGGACTGAACGAGAGCAGCGATGGCGGGTATATTCGATATCGATTTGGATCAGCCGGAGGAAAATGTCTCCGACGATGAGCTCGAGGAGCAATCTGGACGACTGTGAGAAGATTGAGATATCTGAGGACAACGTCAATCAAGGAACAGAGAACATCAGGCCGGAGTGTTTTGAACTGCTGCGGGTGCTGggaaagggaggctatggaaagGTTTTTCAAGTTCGAAAAGTTGCTGGAGCAGCATCGGGGAAGATATTTGCAATGAAGGTTTTAAAGAAGGCTATGATTGTACGCAATGCTAAGGACACTGCCCATACCAAGGCGGAGAGGAACATCCTGGAGGAAGTGAAGCATCCTTTCATCGTGGATCTCATCTACGCCTTCCAGACGGGGGGAAAGCTGTACCTCATCCTGGAGTACCTCAGCGGTGGAGAGCTGTTTATGCAACTGGAAAGAGAGGGGATATTTATGGAAGACACAGCCTGTTTTTACCTGGCAGAAATCTCCATGGCTCTGGGCCATCTGCACCAGAAAGGCATCATCTATAGAGACCTGAAGCCTGAAAACATCATGCTTAACAACCAAGGCCATGTGAAATTGACTGACTTTGGGCTGTGTAAAGAGTCCATCCACGGCGGCACAGTCACCCATACTTTCTGTGGCACCATAGAGTACATGGCCCCAGAGATCCTGATGAGAAGTGGACATAACAGAGCAGTGGACTGGTGGAGTCTTGGAGCGCTTATGTACGATATGCTGACTGGAGCGCCACCCTTCACTGGTGAAAACAGGAAGAAGACCATTGACAAAATCTTAAAATGCAAGCTGAACCTCCCACCCTACCTCACACAAGAAGCCAGAGATCTCCTGAAAAGGCTGCTGAAGAGAAATGCCTCGTCAAGACTTGGAGCAGGGGCCGGAGATGCTACAGAGGTGCAGGCTCATCCCTTTTTCCGACACATTAACTGGGAAGAGCTCCTGGCCAGGAAAGTGGAGCCTCCATTCAAGCCATTCCTGCAATCCGCTGAAGATGTGAGCCAGTTTGACTCTAAGTTCACCAGCCAGACACCAGTAGACAGCCCAGACGACTCCACGCTGAGTGAAAGCGCTAACCAAGCCTTTCTGGGCTTTACGTATGTTGCTCCATCAGTACTGGAAAACGTCAAGGAAAAATTCTCATTTGAGCCAAAAATCCGCTCACCCCAGCGTTTTTTGGGGAGCCCAAGAACACCAGTCAGCCCTTTCAAGTTCTCTGCTGGTGACATGTGGCCCCGGGGCCCCTTGATGCCCGGCGGATCCTCTCTATGTCTCCAGTCGCCCCAGGAGCAGGTCATGGAGGTGTCCGCCTCAGAACAGATGGAAGTGCAGGCCAGCTCTGAGGCCTCTGCGCCCCTTCCCATCCGCCAGCCTTCGGGAGCCAACCTGTCCCAGTTCAAACAACAGGCCTACCCTGTCATGGCCAAGCGGCCCGAGCATCTACGCATTAACCTATGACCAGCAGCTCATCTTAGAGGATTTAATTTTTTCTTTGTTGATATTTCTtctcttattttttattttttaaatataaagacACTAGAGACTATGAAACATTACATTTCAGttctacacaccatcactacctGAAGTCTCCCTCAGGCTTTCACCTCCAGTGTGCTGCAGCTGAGCTCGGCGGACTGGGCCACTCCCTCAGGTCCCCTTGACCTCTTCACCCTGACCCCTAGCAGGACTGGACCAGCGGGCCGGGGCATCACTTTGAATCTTTAACTTGTTTTTATTACTCCATTCTACCACAAAAAAAGGAATGAGAACATGTATAAAATGTGCAGTATATAAAATATCAATCTAAGTGCTTCTTGTTTGATGATTGAATGCTTATGATGAATTAATTGCTTCCACTGAACACTTGGGAGATTTGACAGTATTTCTTGAAGATTGCTTCCTGGCTCGGAATGAAATCATGAATTATTGTTAATTGAAAATATGATTGGGAGGGTTATCAATAAGCTGAGGTTCTGAACATAGCTTTGTCTTAATACAAAATAAATGCATCTACTGTGCTATATCAATGATGGATAAATTCATGAGGGCCtcaataaaaacaaatgtttacTTTTTACATTC
>XM_021588107.2
AGTGTAGTAGCCGGTTATGGCCGCTGCGATGTGTGTTTGTCCATGAGGCGGGGAGCGCGAGCTATTTTCACGGACTGAACGAGAGCAGCGATGGCGGGTATATTCGATATCGATTTGGATCAGCCGGAGGAAAATGTCTCCGACGATGAGCTCGAGGAGACTCAGATCAACGATTTCATGGACCAGTGCAGCGGCTTTGAATTCAATCTGGACGACTGTGAGAAGATTGAGATATCTGAGGACAACGTCAATCAAGGAACAGAGAACATCAGGCCGGAGTGTTTTGAACTGCTGCGGGTGCTGggaaagggaggctatggaaagGTTTTTCAAGTTCGAAAAGTTGCTGGAGCAGCATCGGGGAAGATATTTGCAATGAAGGTTTTAAAGAAGGCTATGATTGTACGCAATGCTAAGGACACTGCCCATACCAAGGCGGAGAGGAACATCCTGGAGGAAGTGAAGCATCCTTTCATCGTGGATCTCATCTACGCCTTCCAGACGGGGGGAAAGCTGTACCTCATCCTGGAGTACCTCAGCGGTGGAGAGCTGTTTATGCAACTGGAAAGAGAGGGGATATTTATGGAAGACACAGCCTGTTTTTACCTGGCAGAAATCTCCATGGCTCTGGGCCATCTGCACCAGAAAGGCATCATCTATAGAGACCTGAAGCCTGAAAACATCATGCTTAACAACCAAGGCCATGTGAAATTGACTGACTTTGGGCTGTGTAAAGAGTCCATCCACGGCGGCACAGTCACCCATACTTTCTGTGGCACCATAGAGTACATGGCCCCAGAGATCCTGATGAGAAGTGGACATAACAGAGCAGTGGACTGGTGGAGTCTTGGAGCGCTTATGTACGATATGCTGACTGGAGCGCCACCCTTCACTGGTGAAAACAGGAAGAAGACCATTGACAAAATCTTAAAATGCAAGCTGAACCTCCCACCCTACCTCACACAAGAAGCCAGAGATCTCCTGAAAAGGCTGCTGAAGAGAAATGCCTCGTCAAGACTTGGAGCAGGGGCCGGAGATGCTACAGAGGTGCAGGCTCATCCCTTTTTCCGACACATTAACTGGGAAGAGCTCCTGGCCAGGAAAGTGGAGCCTCCATTCAAGCCATTCCTGCAATCCGCTGAAGATGTGAGCCAGTTTGACTCTAAGTTCACCAGCCAGACACCAGTAGACAGCCCAGACGACTCCACGCTGAGTGAAAGCGCTAACCAAGCCTTTCTGGGCTTTACGTATGTTGCTCCATCAGTACTGGAAAACGTCAAGGAAAAATTCTCATTTGAGCCAAAAATCCGCTCACCCCAGCGTTTTTTGGGGAGCCCAAGAACACCAGTCAGCCCTTTCAAGTTCTCTGCTGGTGACATGTGGCCCCGGGGCCCCTTGATGCCCGGCGGATCCTCTCTATGTCTCCAGTCGCCCCAGGAGCAGGTCATGGAGGTGTCCGCCTCAGAACAGATGGAAGTGCAGGCCAGCTCTGAGGCCTCTGCGCCCCTTCCCATCCGCCAGCCTTCGGGAGCCAACCTGTCCCAGTTCAAACAACAGGCCTACCCTGTCATGGCCAAGCGGCCCGAGCATCTACGCATTAACCTATGACCAGCAGCTCATCTTAGAGGATTTAATTTTTTCTTTGTTGATATTTCTtctcttattttttattttttaaatataaagacACTAGAGACTATGAAACATTACATTTCAGttctacacaccatcactacctGAAGTCTCCCTCAGGCTTTCACCTCCAGTGTGCTGCAGCTGAGCTCGGCGGACTGGGCCACTCCCTCAGGTCCCCTTGACCTCTTCACCCTGACCCCTAGCAGGACTGGACCAGCGGGCCGGGGCATCACTTTGAATCTTTAACTTGTTTTTATTACTCCATTCTACCACAAAAAAAGGAATGAGAACATGTATAAAATGTGCAGTATATAAAATATCAATCTAAGTGCTTCTTGTTTGATGATTGAATGCTTATGATGAATTAATTGCTTCCACTGAACACTTGGGAGATTTGACAGTATTTCTTGAAGATTGCTTCCTGGCTCGGAATGAAATCATGAATTATTGTTAATTGAAAATATGATTGGGAGGGTTATCAATAAGCTGAGGTTCTGAACATAGCTTTGTCTTAATACAAAATAAATGCATCTACTGTGCTATATCAATGATGGATAAATTCATGAGGGCCtcaataaaaacaaatgtttacTTTTTACATTC
>XM_021588110.2
AGTGTAGTAGCCGGTTATGGCCGCTGCGATGTGTGTTTGTCCATGAGGCGGGGAGCGCGAGCTATTTTCACGGACTGAACGAGAGCAGCGATGGCGGGTATATTCGATATCGATTTGGATCAGCCGGAGGAAAATGTCTCCGACGATGAGCTCGAGGAGACTCAGATCAACGATTTCATGGACCAGTGCAGCGGCTTTGAATTCAATCTGGACGACTGTGAGAAGATTGAGATATCTGAGGACAACGTCAATCAAGGAACAGAGAACATCAGGCCGGAGTGTTTTGAACTGCTGCGGGTGCTGggaaagggaggctatggaaagGTTTTTCAAGTTCGAAAAGTTGCTGGAGCAGCATCGGGGAAGATATTTGCAATGAAGGTTTTAAAGAAGGCTATGATTGTACGCAATGCTAAGGACACTGCCCATACCAAGGCGGAGAGGAACATCCTGGAGGAAGTGAAGCATCCTTTCATCGTGGATCTCATCTACGCCTTCCAGACGGGGGGAAAGCTGTACCTCATCCTGGAGTACCTCAGCGGTGGAGAGCTGTTTATGCAACTGGAAAGAGAGGGGATATTTATGGAAGACACAGCCTGTTTTTACCTGGCAGAAATCTCCATGGCTCTGGGCCATCTGCACCAGAAAGGCATCATCTATAGAGACCTGAAGCCTGAAAACATCATGCTTAACAACCAAGGCCATGTGAAATTGACTGACTTTGGGCTGTGTAAAGAGTCCATCCACGGCGGCACAGTCACCCATACTTTCTGTGGCACCATAGAGTACATGGCCCCAGAGATCCTGATGAGAAGTGGACATAACAGAGCAGTGGACTGGTGGAGTCTTGGAGCGCTTATGTACGATATGCTGACTGGAGCGCCACCCTTCACTGGTGAAAACAGGAAGAAGACCATTGACAAAATCTTAAAATGCAAGCTGAACCTCCCACCCTACCTCACACAAGAAGCCAGAGATCTCCTGAAAAGGCTGCTGAAGAGAAATGCCTCGTCAAGACTTGGAGCAGGGGCCGGAGATGCTACAGAGGTGCAGGCTCATCCCTTTTTCCGACACATTAACTGGGAAGAGCTCCTGGCCAGGAAAGTGGAGCCTCCATTCAAGCCATTCCTGGGCTTTACGTATGTTGCTCCATCAGTACTGGAAAACGTCAAGGAAAAATTCTCATTTGAGCCAAAAATCCGCTCACCCCAGCGTTTTTTGGGGAGCCCAAGAACACCAGTCAGCCCTTTCAAGTTCTCTGCTGGTGACATGTGGCCCCGGGGCCCCTTGATGCCCGGCGGATCCTCTCTATGTCTCCAGTCGCCCCAGGAGCAGGTCATGGAGGTGTCCGCCTCAGAACAGATGGAAGTGCAGGCCAGCTCTGAGGCCTCTGCGCCCCTTCCCATCCGCCAGCCTTCGGGAGCCAACCTGTCCCAGTTCAAACAACAGGCCTACCCTGTCATGGCCAAGCGGCCCGAGCATCTACGCATTAACCTATGACCAGCAGCTCATCTTAGAGGATTTAATTTTTTCTTTGTTGATATTTCTtctcttattttttattttttaaatataaagacACTAGAGACTATGAAACATTACATTTCAGttctacacaccatcactacctGAAGTCTCCCTCAGGCTTTCACCTCCAGTGTGCTGCAGCTGAGCTCGGCGGACTGGGCCACTCCCTCAGGTCCCCTTGACCTCTTCACCCTGACCCCTAGCAGGACTGGACCAGCGGGCCGGGGCATCACTTTGAATCTTTAACTTGTTTTTATTACTCCATTCTACCACAAAAAAAGGAATGAGAACATGTATAAAATGTGCAGTATATAAAATATCAATCTAAGTGCTTCTTGTTTGATGATTGAATGCTTATGATGAATTAATTGCTTCCACTGAACACTTGGGAGATTTGACAGTATTTCTTGAAGATTGCTTCCTGGCTCGGAATGAAATCATGAATTATTGTTAATTGAAAATATGATTGGGAGGGTTATCAATAAGCTGAGGTTCTGAACATAGCTTTGTCTTAATACAAAATAAATGCATCTACTGTGCTATATCAATGATGGATAAATTCATGAGGGCCtcaataaaaacaaatgtttacTTTTTACATTC

Function

NR:

description
ribosomal protein S6 kinase beta-1-like isoform X3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04688 RPS6KB; ribosomal protein S6 kinase beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965834.1 False 2514 mRNA 0.46 15 23875335 23885083
XM_021588108.2 False 2193 mRNA 0.48 14 23875335 23885621
XM_021588107.2 False 2238 mRNA 0.48 15 23875335 23885622
XM_021588110.2 True 2130 mRNA 0.48 14 23875335 23885622

Neighbor

gene id symbol gene type direction distance location
LOC110507820 LOC106581132 coding downstream 5787 23837282 ~ 23869548 (-)
LOC118944716 NA coding downstream 61669 23810397 ~ 23813666 (-)
LOC118944644 NA coding downstream 88145 23777989 ~ 23787190 (-)
LOC110507139 LOC106581136 coding downstream 97373 23761486 ~ 23777962 (-)
LOC110507812 LOC106581137 coding downstream 133996 23737154 ~ 23741339 (-)
vmp1 tmm49 coding upstream 4656 23890278 ~ 23907734 (-)
LOC110507825 LOC106612995 coding upstream 65171 23950793 ~ 23962065 (-)
LOC110507827 LOC106581128 coding upstream 86379 23972001 ~ 23982325 (-)
pcp4b NA coding upstream 250555 24136177 ~ 24181998 (-)
igsf5b LOC106581125 coding upstream 325996 24211618 ~ 24226654 (-)
G2066101 NA non-coding downstream 103354 23769143 ~ 23771981 (-)
G2065422 NA non-coding downstream 179169 23692593 ~ 23696166 (-)
sytl2b LOC106581144 non-coding downstream 329550 23524663 ~ 23546366 (-)
G2065311 NA non-coding downstream 372491 23501921 ~ 23502844 (-)
G2065241 NA non-coding downstream 459859 23415110 ~ 23415476 (-)
G2066157 NA non-coding upstream 24377 23909999 ~ 23910208 (-)
G2066175 NA non-coding upstream 51218 23936840 ~ 23938765 (-)
G2066171 NA non-coding upstream 57890 23943512 ~ 23943865 (-)
G2066336 NA non-coding upstream 293610 24179232 ~ 24179834 (-)
G2066383 NA non-coding upstream 361440 24247062 ~ 24247264 (-)
G2066126 LOC106581133 other downstream 66426 23807738 ~ 23808909 (-)
G2066096 LOC106581136 other downstream 109856 23763699 ~ 23765479 (-)
G2065425 NA other downstream 169370 23703163 ~ 23705965 (-)
zbtb16b LOC106581153 other downstream 1067229 22780311 ~ 22808183 (-)
LOC110507789 LOC106581159 other downstream 1157229 22712654 ~ 22718153 (-)
G2068043 NA other upstream 1933017 25818639 ~ 25834101 (-)
G2068676 NA other upstream 2439508 26325130 ~ 26325479 (-)
LOC110507885 LOC106581250 other upstream 3464351 27333102 ~ 27404380 (-)
LOC110507886 LOC106581251 other upstream 3544550 27428483 ~ 27447544 (-)

Expression


Co-expression Network