LOC110507825 (LOC106612995)


Basic Information

Item Value
gene id LOC110507825
gene name LOC106612995
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 23950793 ~ 23962065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588118.2
TTTCACGAATCGTAGGATGTTGCACCCTGGATGTTTTGACCAAATGTAACGTTACTTGCTTTATTCGTGATTAATGTATTTTTACTTGATTTTACAGATAATGTAACTTGTAATTGTTGCAATAATTCGACATTGCAGCCATGTTGCTTCCGTCTGACATAGCGCGGCTCGTTTTAGgataCATGCAACAAGAGGGACTGTGTTCTACGAGCCAGGCATTCATTCGTGAAAGCCCCAATTTGAAGGAGTACGCAGAACACAGCTCAGATGATGCAACTATTCCTGCTTGTGTGTTTTCCCTCTTTGGGAAAAACCTGACAACTATTTTGAATGAGTATGTTGCTGTCAAAGCTAAAGAGACGATTGAAGAGACTCAGATACCTGTCATGATGACATCATTGTGGAAAAAGCTTGATTTCACACTCAATCAAATCAAGTCTATGCAAAACTCCCCAGCTATTATCCAGAATCAAAGACTCCGCACACGTAATGGGATCGTGAACTTGAGGGGGCGACAGAGAGCCTTGTCATCAACGCAGTCCCCCAGCTCTGGGTTTCTGTCATCGTCGGCCCAGGGCATCGCCACCCCAGTCTGCTACAGCTCCCAGCAGACCAGACCCTCCCCCATCTGCGGCACACAGCCCCAGATCCAAGATGGAGGACGTCTGCTCATTAATGTGAACCGGGAGTCACCTTTGCAAATAACGGTTCCAGACAACCGGTTAACCACAGGACCATTATCCCCAGGGCGTCGGAAATGgaggagaggtgggggttCCAGTGGATCCGGTGGGACTGGAAGAGCCAACATGGCGGCCAGTAGCCTGACAGCAGAGCCCCAGAGTGAAGAGGCAGTCACAGAGAATTTCCCTCGAATGTTGATACAAAATGCAAGAGAGAGGATTCTAAATGACAAGTCCTTACAAGAGAAGCTTGCTGAAAACATCAACAAAATTCTAGCAAGTGATGTCAGTCCTCAGGCTTTAAAGGCATCATGCAGCACCATGGAGCCTGACCAGTCAATAGATGAAATTCTGGGCCTGCAGGGGGAGATTCATATGTCTAATGATGTTATACAAGACATCTTGGAGCAGACAGAGTCCGACCCAGCCTTCCAGGctctctttgacctctttgattACGGCAAAAGCAAAACCAGTGAGGATACTGAACAAGGAGCTGGGAACGTGAGCAATACCATCACAGAGAATGGTGAGACTGAGACTAGATGTATTGACGGCTCTCCTGAGACTGGAGACCCAGGCACTGGGCCTGAAAACTCGACATGTGAACAAGAAAATAGAGTAACAAAGTCCAGTCAAGAGCCCAAGAGTAAGAAAACAAGGAAATCTGCACCTCCTGTTTCAAGCACTTCAAAGGCAACTCCTGGACCCAGTAGCAGAGGGTTGAGAAGGGGAGCTATCTCAACAACTCCTGGACCCAGTAGCAGAGGGTTGAGAAGGGGAACTAGCTCAACAAATCCTGGACTCAGTAGCAGAGGGTTGAGAAGGGGAGCTAGCTCAACAACTCCTGAACCCAGTAGCAAAGGGGTGAGAAGGGGAGATATTGCAACTCGACCCTCAGCACGTATTGATCAACTTACCGCCGCTGTTTCTTCTGCCGCAAAGGACTCTGATAGAGTTGACTCAGGCTCCATCTTTTATCCGGATGTATCAGGCGTGGATATAGACAAATCTCTCAATACCCCCCTTGACAGTATAGCTCCGCCAGATGTCTTTGAGCCAGTCAGACAGGAGAGTGGAACAATTCGTCCGGCGTCAGCATGCAACACACCTTCATCTGAAACCAGGACGGTCTCTGCTGTGAAAAACATATTAGGCAATGAGAACACAGTGGGGGCTGATGGCAGACAAGTGATGGATAACCAAGCTTCACTTCTTAACTCTTCACCTTCCCTGTTCAATTCCATGCCAATGCTGGATCAGTCAAACAAGGCTCCCATACAGGCCTCTAACCTGCCTCATAGGAATATTAACCCTCCCAGCAGTGTAGGAATTTCACAACCTCTACCACAGACCATACACTCTATGGCTGTCCCCTCAACAGTTACAACAACTCCTGCTGCCCCAACCTTCATCCCAAACCCCAACCCTACAGGCAAGGAAGTAGACCCCAGTAAGATTGTGGCCCTGAAGATCATAATCAGCGATGAGCAGGAGGAGCCCTCCAGTGACTCTGCCCTGAACCAGGCTGTGTCCAGCATCACTGGGGACAGGATCCCcaccatcttcctctcctctcccaccaagTCACCTGCTAAGGCCCCGGCCCTCAGTGGAGCCCCAATGGCTCAGGAGGAGACTGTGCAGGCGGTGAGCAGCTTACAGAGGACAGAAGTCCTCCTGCCAGCAGAGACCAATCCTCTTAGTGAGAAAGCAGGGGATGTGACAGCATTAGCAGGGACGTCATCTTCGTTGACACAGCCTGGCTACTACATTCAGCTGCCCTTTGATTCAGCCACATCCACCAACAGCTACATCTTAGTGACAGACACAACAGCTACAGACCCCCAGTCCAACAAGGTGATATTACCCAGTGGCGCCCCTCAGGTACAGACTGTACCCCCTACCTCATATACTCTGGCTACTCCACCCTGCTATTCTCCTGTTCAGCCCATGCTGCAAAGCATGGTGGTTCCTGTATCTGTTGTTGGGCAGAACAATGCAACACAGTTCTCAGTAGTTCCTAATCAGTTGATAGCCATGCCTAGCCCTGCTTCAGCAAAGCAGCCAGCAGCAGTGAATACCGACCCTAAACTGGCTCCCAAGGACACCACAGTCTCAGGAAAAACGGGAGCTTCTGGATCGAATATAGCTACAAAGCAGGTCCACCCGCAATCCTCTGAAAGCACAGGGCAGCAGAAGGTAGCAGTTGGCTTGAGTCCCAGCCATAGGAGGATGCTTTGCTTTGATGGGTCTGCTGGTGAAACTTCCACCTCCAAAGCTACAGTTACTGCTGTATCGCCTGTCCAACAGGTGGAGAAAGAGATACCTAAATCTGCCTCTGCTATCTTGGGGAGCAGCAGGCCAAAAAGGAGAATAGAGACTGTAAGATGTACAGACAGCACTCAGACATCATGGAccggaacagagacagagaaatccTCCACTGTCCAAAAGCAGAAAGAAGGTGTGAAAAAGACCCCTTCAAAGAGGGACGCAGATCAGAATGCAAGAGGTCAAAGTGCAAGTACCAGTAGATCTCAGAGTGCTGGTAGCAGTAGGACTGATGCCTCACAGTCAGAGTCCAGGAAGAGATCTCAATCAGCAGACAAGAAGGATGATGGTGGAGCAGGACCTAAGGATGCCCAGAGCCCCAGGTCCTCTTCCTCTGATCACAGACTGAGATCAGGGAGCAGGAAAGAGAAAGACACATATAGACAAGAGCCTACTGAGAAATCTCCTGCCAAGGAGccggagggacagacagagaaaaggaCATCTTCTCAGGATCCCCCTCATGTCACTGCCAATAAGGAGAATGAGCTGGAGGGGGGAAGGCGAGAGCAGCAGCCCACACCAGCACCAAGAGCATTCAGCCCGGCCCCACAAACCCCTGTCCCCCAGGCTTGCTCCAGCAAATTCCCCTCCAAGACCAGCCCACTGACCAAGCAGGCAGCTGAAATGCTCCACAACATCCAGGGTCTaaaccctccctcctcccctcctaagAAGCCTGGCATGGGCTGTCTGGAGCTGCCTCTTCCTCGGACCCCTGGCCGTCTCCAGGAGTCTCTATACTGCCCCAGGACCCCTGCACGTCAGAAGCTAGACAGAAATGGAGAGGGCACCCCCAGGCACCTGGTCCCTCCCACCACCCCGGACCTTCCCTCCTGCAGCCCAGCCAGCGAAGCAGGGAGTGAAAACAGCATCAACATGGCGGCTCACACACTGATGATCCTATCCCGAGCCGCCATTGCCAGGACAGGCACCCCACTGAAAGACAGTTTGCGCCAGGAGGGGGCTGGATTAGTGACCCCTGTAGCCTTCAAGAGCAAGAAGCGCAAGCAGCCTGAGCCCCTGGCCAGCCCGCCAGCAAAGAATGATATCTCAGGTTCATCTAGCAGTAAGAAGAAAGCAAAGAAACAGCAGAAACTAATGGATTCCTTCCCCGATGACTTGGATGTGGATAAGTTCCTGTCTTCACTGCATTATGATGAGTGATGGGTTGAGTTATAGCAGTTGGACAATGAGATGAGAATCTCCCAAACACTACCTACCTACTCTCCAGGAATTGAACAAGCCATAATTTACTGTCACAGTGCCTATGGTTAAATCATAGGTGTTAGGCACCTGTGGTCTAGTGGAGCATGTCCTCAGCTATTATTTTTTATTCTATGGTATGCCTGCTTGTAGGGTTTGTCCTACATCCTTTGGCGTAACAACTAATTATACATgtgatgtatatactgtatagacattATTGCAGAAATGCTAGATTGAGAGCACTTTGGTTCCATTCAAGGACTGTAATGTTAAGAATGGTTTCCCAATCTTGTATTAATCatttcaagaattcaaacctttttCAATATTTCACTGTGTCTAGACTTTAAATGATCCACCCAACACACTATGGCTGTGGTTCGacaggcagcacaattctgatctttatttcactaattggtattttgaccagaTCAGCTGTGAAAAAGATTGGTcaaaaagaccaattagtgggaaaaaatatcagaattgggctgcgtggtgtgtgtgtgtaaaatacatTTGTGCAGATGTTTTCTTTACTAGTGATTTTAAATTAAATCTTGTTTTAGAAAAATCTA
>XM_021588117.2
CCAAATATGATGGAAATTCCGGGTTACGTGTACTCGAGTTCCCCGCCTTTTCACGAATCGTAGGATGTTGCACCCTGGATGTTTTGACCAAATCCATGTTGCTTCCGTCTGACATAGCGCGGCTCGTTTTAGgataCATGCAACAAGAGGGACTGTGTTCTACGAGCCAGGCATTCATTCGTGAAAGCCCCAATTTGAAGGAGTACGCAGAACACAGCTCAGATGATGCAACTATTCCTGCTTGTGTGTTTTCCCTCTTTGGGAAAAACCTGACAACTATTTTGAATGAGTATGTTGCTGTCAAAGCTAAAGAGACGATTGAAGAGACTCAGATACCTGTCATGATGACATCATTGTGGAAAAAGCTTGATTTCACACTCAATCAAATCAAGTCTATGCAAAACTCCCCAGCTATTATCCAGAATCAAAGACTCCGCACACGTAATGGGATCGTGAACTTGAGGGGGCGACAGAGAGCCTTGTCATCAACGCAGTCCCCCAGCTCTGGGTTTCTGTCATCGTCGGCCCAGGGCATCGCCACCCCAGTCTGCTACAGCTCCCAGCAGACCAGACCCTCCCCCATCTGCGGCACACAGCCCCAGATCCAAGATGGAGGACGTCTGCTCATTAATGTGAACCGGGAGTCACCTTTGCAAATAACGGTTCCAGACAACCGGTTAACCACAGGACCATTATCCCCAGGGCGTCGGAAATGTGACTCCCccaggaggagaggtgggggttCCAGTGGATCCGGTGGGACTGGAAGAGCCAACATGGCGGCCAGTAGCCTGACAGCAGAGCCCCAGAGTGAAGAGGCAGTCACAGAGAATTTCCCTCGAATGTTGATACAAAATGCAAGAGAGAGGATTCTAAATGACAAGTCCTTACAAGAGAAGCTTGCTGAAAACATCAACAAAATTCTAGCAAGTGATGTCAGTCCTCAGGCTTTAAAGGCATCATGCAGCACCATGGAGCCTGACCAGTCAATAGATGAAATTCTGGGCCTGCAGGGGGAGATTCATATGTCTAATGATGTTATACAAGACATCTTGGAGCAGACAGAGTCCGACCCAGCCTTCCAGGctctctttgacctctttgattACGGCAAAAGCAAAACCAGTGAGGATACTGAACAAGGAGCTGGGAACGTGAGCAATACCATCACAGAGAATGGTGAGACTGAGACTAGATGTATTGACGGCTCTCCTGAGACTGGAGACCCAGGCACTGGGCCTGAAAACTCGACATGTGAACAAGAAAATAGAGTAACAAAGTCCAGTCAAGAGCCCAAGAGTAAGAAAACAAGGAAATCTGCACCTCCTGTTTCAAGCACTTCAAAGGCAACTCCTGGACCCAGTAGCAGAGGGTTGAGAAGGGGAGCTATCTCAACAACTCCTGGACCCAGTAGCAGAGGGTTGAGAAGGGGAACTAGCTCAACAAATCCTGGACTCAGTAGCAGAGGGTTGAGAAGGGGAGCTAGCTCAACAACTCCTGAACCCAGTAGCAAAGGGGTGAGAAGGGGAGATATTGCAACTCGACCCTCAGCACGTATTGATCAACTTACCGCCGCTGTTTCTTCTGCCGCAAAGGACTCTGATAGAGTTGACTCAGGCTCCATCTTTTATCCGGATGTATCAGGCGTGGATATAGACAAATCTCTCAATACCCCCCTTGACAGTATAGCTCCGCCAGATGTCTTTGAGCCAGTCAGACAGGAGAGTGGAACAATTCGTCCGGCGTCAGCATGCAACACACCTTCATCTGAAACCAGGACGGTCTCTGCTGTGAAAAACATATTAGGCAATGAGAACACAGTGGGGGCTGATGGCAGACAAGTGATGGATAACCAAGCTTCACTTCTTAACTCTTCACCTTCCCTGTTCAATTCCATGCCAATGCTGGATCAGTCAAACAAGGCTCCCATACAGGCCTCTAACCTGCCTCATAGGAATATTAACCCTCCCAGCAGTGTAGGAATTTCACAACCTCTACCACAGACCATACACTCTATGGCTGTCCCCTCAACAGTTACAACAACTCCTGCTGCCCCAACCTTCATCCCAAACCCCAACCCTACAGGCAAGGAAGTAGACCCCAGTAAGATTGTGGCCCTGAAGATCATAATCAGCGATGAGCAGGAGGAGCCCTCCAGTGACTCTGCCCTGAACCAGGCTGTGTCCAGCATCACTGGGGACAGGATCCCcaccatcttcctctcctctcccaccaagTCACCTGCTAAGGCCCCGGCCCTCAGTGGAGCCCCAATGGCTCAGGAGGAGACTGTGCAGGCGGTGAGCAGCTTACAGAGGACAGAAGTCCTCCTGCCAGCAGAGACCAATCCTCTTAGTGAGAAAGCAGGGGATGTGACAGCATTAGCAGGGACGTCATCTTCGTTGACACAGCCTGGCTACTACATTCAGCTGCCCTTTGATTCAGCCACATCCACCAACAGCTACATCTTAGTGACAGACACAACAGCTACAGACCCCCAGTCCAACAAGGTGATATTACCCAGTGGCGCCCCTCAGGTACAGACTGTACCCCCTACCTCATATACTCTGGCTACTCCACCCTGCTATTCTCCTGTTCAGCCCATGCTGCAAAGCATGGTGGTTCCTGTATCTGTTGTTGGGCAGAACAATGCAACACAGTTCTCAGTAGTTCCTAATCAGTTGATAGCCATGCCTAGCCCTGCTTCAGCAAAGCAGCCAGCAGCAGTGAATACCGACCCTAAACTGGCTCCCAAGGACACCACAGTCTCAGGAAAAACGGGAGCTTCTGGATCGAATATAGCTACAAAGCAGGTCCACCCGCAATCCTCTGAAAGCACAGGGCAGCAGAAGGTAGCAGTTGGCTTGAGTCCCAGCCATAGGAGGATGCTTTGCTTTGATGGGTCTGCTGGTGAAACTTCCACCTCCAAAGCTACAGTTACTGCTGTATCGCCTGTCCAACAGGTGGAGAAAGAGATACCTAAATCTGCCTCTGCTATCTTGGGGAGCAGCAGGCCAAAAAGGAGAATAGAGACTGTAAGATGTACAGACAGCACTCAGACATCATGGAccggaacagagacagagaaatccTCCACTGTCCAAAAGCAGAAAGAAGGTGTGAAAAAGACCCCTTCAAAGAGGGACGCAGATCAGAATGCAAGAGGTCAAAGTGCAAGTACCAGTAGATCTCAGAGTGCTGGTAGCAGTAGGACTGATGCCTCACAGTCAGAGTCCAGGAAGAGATCTCAATCAGCAGACAAGAAGGATGATGGTGGAGCAGGACCTAAGGATGCCCAGAGCCCCAGGTCCTCTTCCTCTGATCACAGACTGAGATCAGGGAGCAGGAAAGAGAAAGACACATATAGACAAGAGCCTACTGAGAAATCTCCTGCCAAGGAGccggagggacagacagagaaaaggaCATCTTCTCAGGATCCCCCTCATGTCACTGCCAATAAGGAGAATGAGCTGGAGGGGGGAAGGCGAGAGCAGCAGCCCACACCAGCACCAAGAGCATTCAGCCCGGCCCCACAAACCCCTGTCCCCCAGGCTTGCTCCAGCAAATTCCCCTCCAAGACCAGCCCACTGACCAAGCAGGCAGCTGAAATGCTCCACAACATCCAGGGTCTaaaccctccctcctcccctcctaagAAGCCTGGCATGGGCTGTCTGGAGCTGCCTCTTCCTCGGACCCCTGGCCGTCTCCAGGAGTCTCTATACTGCCCCAGGACCCCTGCACGTCAGAAGCTAGACAGAAATGGAGAGGGCACCCCCAGGCACCTGGTCCCTCCCACCACCCCGGACCTTCCCTCCTGCAGCCCAGCCAGCGAAGCAGGGAGTGAAAACAGCATCAACATGGCGGCTCACACACTGATGATCCTATCCCGAGCCGCCATTGCCAGGACAGGCACCCCACTGAAAGACAGTTTGCGCCAGGAGGGGGCTGGATTAGTGACCCCTGTAGCCTTCAAGAGCAAGAAGCGCAAGCAGCCTGAGCCCCTGGCCAGCCCGCCAGCAAAGAATGATATCTCAGGTTCATCTAGCAGTAAGAAGAAAGCAAAGAAACAGCAGAAACTAATGGATTCCTTCCCCGATGACTTGGATGTGGATAAGTTCCTGTCTTCACTGCATTATGATGAGTGATGGGTTGAGTTATAGCAGTTGGACAATGAGATGAGAATCTCCCAAACACTACCTACCTACTCTCCAGGAATTGAACAAGCCATAATTTACTGTCACAGTGCCTATGGTTAAATCATAGGTGTTAGGCACCTGTGGTCTAGTGGAGCATGTCCTCAGCTATTATTTTTTATTCTATGGTATGCCTGCTTGTAGGGTTTGTCCTACATCCTTTGGCGTAACAACTAATTATACATgtgatgtatatactgtatagacattATTGCAGAAATGCTAGATTGAGAGCACTTTGGTTCCATTCAAGGACTGTAATGTTAAGAATGGTTTCCCAATCTTGTATTAATCatttcaagaattcaaacctttttCAATATTTCACTGTGTCTAGACTTTAAATGATCCACCCAACACACTATGGCTGTGGTTCGacaggcagcacaattctgatctttatttcactaattggtattttgaccagaTCAGCTGTGAAAAAGATTGGTcaaaaagaccaattagtgggaaaaaatatcagaattgggctgcgtggtgtgtgtgtgtaaaatacatTTGTGCAGATGTTTTCTTTACTAGTGATTTTAAATTAAATCTTGTTTTAGAAAAATCTA

Function

NR:

description
protein NPAT-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588118.2 False 4807 mRNA 0.49 17 23950793 23962017
XM_021588117.2 True 4774 mRNA 0.50 18 23950793 23962065
Loading

Neighbor

gene id symbol gene type direction distance location
vmp1 tmm49 coding downstream 43059 23890278 ~ 23907734 (-)
LOC110507821 LOC106581130 coding downstream 65171 23875335 ~ 23885622 (-)
LOC110507820 LOC106581132 coding downstream 81245 23837282 ~ 23869548 (-)
LOC118944716 NA coding downstream 137127 23810397 ~ 23813666 (-)
LOC118944644 NA coding downstream 163603 23777989 ~ 23787190 (-)
LOC110507827 LOC106581128 coding upstream 9936 23972001 ~ 23982325 (-)
pcp4b NA coding upstream 174112 24136177 ~ 24181998 (-)
igsf5b LOC106581125 coding upstream 249553 24211618 ~ 24226654 (-)
LOC110507833 NA coding upstream 265043 24227108 ~ 24244327 (-)
LOC118944777 NA coding upstream 272238 24234303 ~ 24236162 (-)
G2066171 NA non-coding downstream 6928 23943512 ~ 23943865 (-)
G2066175 NA non-coding downstream 12028 23936840 ~ 23938765 (-)
G2066157 NA non-coding downstream 40585 23909999 ~ 23910208 (-)
G2066101 NA non-coding downstream 178812 23769143 ~ 23771981 (-)
G2065422 NA non-coding downstream 254627 23692593 ~ 23696166 (-)
G2066336 NA non-coding upstream 217167 24179232 ~ 24179834 (-)
G2066383 NA non-coding upstream 284997 24247062 ~ 24247264 (-)
G2066384 NA non-coding upstream 285504 24247569 ~ 24247962 (-)
G2066402 NA non-coding upstream 319554 24281619 ~ 24281841 (-)
G2066440 NA non-coding upstream 403079 24365144 ~ 24365355 (-)
G2066126 LOC106581133 other downstream 141884 23807738 ~ 23808909 (-)
G2066096 LOC106581136 other downstream 185314 23763699 ~ 23765479 (-)
G2065425 NA other downstream 244828 23703163 ~ 23705965 (-)
zbtb16b LOC106581153 other downstream 1142687 22780311 ~ 22808183 (-)
LOC110507789 LOC106581159 other downstream 1232687 22712654 ~ 22718153 (-)
G2068043 NA other upstream 1856574 25818639 ~ 25834101 (-)
G2068676 NA other upstream 2363065 26325130 ~ 26325479 (-)
LOC110507885 LOC106581250 other upstream 3387908 27333102 ~ 27404380 (-)
LOC110507886 LOC106581251 other upstream 3468107 27428483 ~ 27447544 (-)

Expression

LOC110507825(LOC106612995) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110507825(LOC106612995) Expression in each Bioproject

Bar chart with 21 bars.
LOC110507825(LOC106612995) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network