LOC110507880 (LOC106613101)


Basic Information

Item Value
gene id LOC110507880
gene name LOC106613101
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 26934110 ~ 26937856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110507880
gttggcgcgcagagtgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccagaACTGTTGGTtctccatgaagctggttgagagaatgccaagagcatgcaaagctgtcatcaagaccaATGGTGGCTACTTTTTGAAGAATCTACAACATCTTTTTATTTCTTTTAACAgttattttggttactacttgattccatatgtgtcacttcatagttttgatgtcttcactattctaaaatgtagaaaatagaaaaacaattaaaagcccttgaatgagtaggtgtgtctaaacctaTGACTGGTACactaacatttttttatttttcagacCGCTCATGTAGCCCAAACATTTTATTTTGTGATATTGAAGTTATAGTACTCACACTATTTGTTGTTGCTACGTTTGCACCACAGGTAGCTAGCACACTTACATGCTTATACACAcatttgtatgtacagtatattaatgtaAATAGGATTGATTCGGTGCTTTTCAGTTGGATATCCTGTACATCAGTCTaggctggtgagaggagctataggaggatgggctcgttgTACTGGCTAGAGAAGATTTAAGTCAAGTGTGGTTTACATATGTTGTTTTGTTtaccgttccattgattccattctagccattataatgatcccgtcctcctatagctcctcccaccagcctacACTGATGGACATAAACCATTGTGGTTGGTTTGTATAGTGTACAGTACCTCCCATGGACTCCTTTTGTGATATTTTGTAGTTTTGCAGAAACGTTTGTTACACACCTGTTCCGAGTCCTGTGTCTTCCATGCTGAATGGTGTAAATAGTGTCAGATTGTTTTAGCTCTCGTTTAACACTCTTGTACTCTGTAAATAAGCGttctttgtttgttttgttcctgtctgttaaaacaatgtaaatacagaaagattttttttaaagaacaaacTTAAAAATGCCTCCTTGTACTGTTATTTTTGATTACTTTGAGACCTGGGGTCAATGATctaaaatgcttttctttcagtAATGTGTTGAGTGAACTATCCAGAAGGTGGTGGTCGTGTACAGCTCTATGTCAAAGGTAACAGTTGCAATTTATGTAGGTCTAATGGTAAAACAATCTCTCGTATTTGACTATTTTTAATTGTTCCTTGGCCTGAGAGAGTAGAGACTGGTTTATCCAGTTGCACAATCACTACAGAAACTCAAACCATCTTGTAGCTGATAAGAGGGGTGTGATATTTTCACGGGCTCTCCCATGAGTACAAATTAGTTTGCACACACTCTTGAAAGCAAAGGTGTTTTCACACGGGAGACAAGGATGGCTACCTTTTTGCTTGTTGTCTGTGTAGTAGTCGGGATTGCATTTATTTACCACGGTGTTGTGGTTAAAGGACAAAAACTGTCATCGTAAAGTCATTTTTCAGGTTTATGCCCACTTACTCCAGGAAGTAACACAGGCATAAGGAAGATGACTGCACTAGATCTGGCCAGGAGAGGTGCTAGAGTCATCCTGGCCTACCGCAGCAAACAGAACTGAGGCTGCGCTCGCTGACATCAAGAGGGAGAGTGGGAGCAATGCGGTGGTGTTCATGCATCTGGATCTGGGCAGTCTGAAGTCTGTTCGCTCCTTTGCTGAAACCTTCCTAAAGACTGAGTGCAGATTGGACCTGCTCATCAACAATGCAGGTATTTACATGCCAGGCACCACAGAGGATGGCTTGGGGATGATGTTTGGTGTCAACCACATTGGTCACTTCCTGTTGACCAACCTGCTTCTGGACCATTTGAATAAGTGCGGTCAGAGTCGAGTGGTCAACGTGGCGTGCGTGGGTCATAACTTCGGCACCATTGACTTCAACTGTTTGAACTCTCACAAGGAGGTGGGAGTTGGTGATTCGTTCATGGATGTCTTCACCACATACTGCAACAGCAAGCTGTGTAATGTTCTCTTCAACCATGAGCTAGCCAAGAGATTACACGGCACAAACGTGACCTGCTACACCCTCCACCCAGGAGCCATCAACTCTGAGCTGACTCGCGGCATCAACAAGGTGGCCATGATGCTGATGAAGCCTTTTTTCATGTTCTTTTTCAAGAACTATGTGGCGGGGTCTCAGACCACCCTGCACTGTGCCCTGCAGGAGGGCCTGGAGCCCCTCTCTGGATGCTACTTCTCTAACTGTACAGTCAGGAACGTCTATCCTAAGGCCAGAGATGATGCGGTGACCAAGAAGCTATGGGAAGTCAGTGAGCGTCTGAGTGGGCTATCATCTTAAGAAACTCACTCTAACTCAGCAGTTTTAACTGGACTGCAAGCTACTAACTAATATCCTGTGTTTTTTCAAAACTATTTTTGGGGGTTATCCTTTATAAAATGTACGTACATagaagtgcattcggaaagtattcaggccaaTTGATttgattccacattttgttacgttacatcctaatatgtattaaattgtttttttcccctcaatccctcaatctacacacaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110507880 True 2517 mRNA 0.42 5 26934110 26937856

Neighbor

gene id symbol gene type direction distance location
LOC110507878 LOC106581235 coding downstream 2278 26925936 ~ 26931832 (-)
dhrs13a.3 LOC106581234 coding downstream 9663 26921607 ~ 26924447 (-)
LOC118944646 NA coding downstream 207021 26724918 ~ 26727089 (-)
LOC110507877 LOC106581220 coding downstream 304924 26619306 ~ 26629186 (-)
LOC110507875 LOC106581221 coding downstream 495770 26391962 ~ 26438340 (-)
LOC110507881 LOC106581238 coding upstream 944 26938800 ~ 26953641 (-)
LOC110507882 LOC106613099 coding upstream 17755 26955611 ~ 27086578 (-)
LOC110507883 LOC106581247 coding upstream 188689 27056634 ~ 27297205 (-)
LOC110507142 NA coding upstream 361255 27299111 ~ 27299930 (-)
LOC100135795 LOC100135795 coding upstream 381135 27318991 ~ 27330465 (-)
G2068989 NA non-coding downstream 136827 26777355 ~ 26797283 (-)
G2068976 NA non-coding downstream 143697 26746632 ~ 26790413 (-)
G2068953 NA non-coding downstream 190137 26743756 ~ 26743973 (-)
G2068942 NA non-coding downstream 210759 26723049 ~ 26723351 (-)
G2068937 NA non-coding downstream 215900 26717827 ~ 26718210 (-)
G2069562 NA non-coding upstream 103989 27041845 ~ 27043410 (-)
G2069652 NA non-coding upstream 297502 27235358 ~ 27242859 (-)
G2069672 NA non-coding upstream 344943 27282799 ~ 27283116 (-)
G2069679 NA non-coding upstream 349836 27287692 ~ 27333031 (-)
G2068676 NA other downstream 608631 26325130 ~ 26325479 (-)
G2068043 NA other downstream 1100009 25818639 ~ 25834101 (-)
pcp4b NA other downstream 2752290 24136177 ~ 24181998 (-)
G2066126 LOC106581133 other downstream 3125201 23807738 ~ 23808909 (-)
G2066096 LOC106581136 other downstream 3168631 23763699 ~ 23765479 (-)
LOC110507885 LOC106581250 other upstream 412117 27333102 ~ 27404380 (-)
LOC110507886 LOC106581251 other upstream 492316 27428483 ~ 27447544 (-)
LOC110507887 LOC106581252 other upstream 510364 27448217 ~ 27500051 (-)
G2069842 NA other upstream 602144 27540000 ~ 27540609 (-)
LOC118944698 LOC106581256 other upstream 931368 27866010 ~ 27871529 (-)

Expression


Co-expression Network