LOC110507881 (LOC106581238)


Basic Information

Item Value
gene id LOC110507881
gene name LOC106581238
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 26938800 ~ 26953641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965788.1
GTGTTGACTAGTGACAAGCGTTTCTCTGCTGTGGCGGCCATGGTTTTCAACGATCTTGAAATGCGCATGCTCAAACGTAATTTCGTTCGCGGTTGCGCCAACTCGGATAGGATGTTGCCACTAGCAGCATTGATGCATAGGCTTTTTCAGAACAAAAATACATTTCTTGAGGATCCGGCACTGTTGGACgaataacaacaacaacgcattTTGCAACCCTTGATTGGAGGGAACACAACGTTGCGAGCATTTTACATTTAGTGTATTCTGACTGTTGACAATGCAAAGTGGAAGCGAGCGGGTTTGCAGAATTTTCAAGCGTCTTCTAATTTCAGCTAGTAGGAGCAGTAGGAGCAAAAACAAGAACCATGGCTAGGCCTCGCAGATACATTCAGTCGTTCAGCAACCTGACAACAAGACAGTTTAGAATAGGCACAAAGTTGAGGTTTGTGAGAAACTCGTAACATTCGTCATTCTTGCCAGCAGTTAGCAAGCAAACATTGCTTAATGGATGGTGTTGCTAATTAATCAGTCAGTGTGTGCCTGTATCACATTCAGATAAAGCAGCTAGCTATCGGTTGCCAACTTGCATACGAGGTCGCTACGTACGGCTAGTTAACTGTTAACCTTGGCTGATTCCGTTATTCCCTCCAATATACAGTAATAGGCAGAGAAAGGCAATTTTTAGTAaaacgtgcgtgtgtgtgggggggtcgcCTGTCACTGCCAGTGGGACTGGGCGTGAAACGACactactagctagctacagtagctggtTCCATAGGGTTATTTGCAAGAAGACTGCTGGGTGAATGTGGGACAAAATGGAGACGCCAACGATTGTGTACGATTTGGATACCTCTGGGGGTTTAATGGAGCAAATTCAAACACTGCTCGCACCACCCAAGTCAGAGGATGGCGAAAAAAGGAGTCGGAGGAGTGAAAGGGACGTTCGGAGAAAGAGCAGGGCCACCAACCACGATACCTGTGATAGTTGTCATGAGGGAGGGGACCTTCTGTGTTGTGACCATTGTCCAGCCGCCTTCCATCTACAATGCTGtgaccCACCATTGAGTGAAGAAATGCTGCCCCCTGGTGACTGGATGTGTCATCGCTGCAATGTCCGTAGAAAGAAGCGGGAGCAGAAGGCTGAGAGGACAAATGGCCTGCTGGAGAGGGAGAGGCTCTTCTCCAAGCGCTCCTCCCCTGCAGCTGAACTGGAGCGGGGCaccaccactattaccaccaccatgctgcgtCTGGACAGGCTGCCCCCCGGGGTCGGAGCAGCTGGACCCGGCCTGCGGGTGGCTGCCGTGCATCTCGAGCGTCTGGATCGCCTTGAGCGGCGGGCCAGCAGCCGCCCTGGCACGCCCACTTCCAACACCTGTTCCACGGACACCCCCTCGGAGGGGCAGAACGAGGTAGACAAGGAGATGGCCAAGGCAGAGGAGGTGGAGGTCCAGGGCTCAGAATCTGAGCAagccaccaccacccctacctcCACACCACGGCTCCTCAAGAGGCCCTTCCAGCTGCTCATCGCCGCCGCCATGGAGCAGAACCCCTCGCAATTCCAGCTGCCCAACGAACTCACCTGCACCACAGCACTGCCAGGCAGCAGTAAacggaggaggaaagaggagctgATCATGAAGACTTTCAGAAGGCCACAGCATGAGATGGACCCCAACGGCCTCGTTCCTCTGCCAGTCAGGGTGTGCTTCTCCTGCACCAGGAGCTGCAGAATGGCGCCCCTGGTTCAGTGTGACTATTGCCCCCTGCTCTTCCACATGGACTGCCTGGACCCCCCACTTACTGCCATGCCCACAGGCAGGTGGATGTGCCCCAACCATATGGAGCACTTGGTGCTGAACCAGAGGAGCCTGTCCCTTACCAGCCGCTGCCAGCTCTTAGACCAGTTCCAGGATAGGATATCCCAGCACGCTGTCAAGGTGGGCTTCCTGCGACGGGTCCACCGACAGAATCCCCCTGTCCGCAGTGGTGTCCACCACAAGACGAAGGTGCTCAAGGTGCCCAACGCTATTAAGTCCCAGTACAAGAACCCCCCGGCCATTTTGGCTCCTGCAGGGGTGCGTAACGGGGAGCTGATCTGTAATGGTGTCCCATCCCAGGACTGCTCCCCTCAGCATTTTACCAGCCAGGCGGAGCAAAAGGAGTGGCTTCGAGATGTCATCTCGCTGCAGTGCAGCATCATGCGACATTTATCTGGCAAGCAGAAGTCCTCGTCAGACTGGCACTCTgaacagacaaacagggaacgGAAAGACATTAAGCTCCGTGTGGCCCTAGAGGAGAACAGCTCTCTGCCCCTTGCAGAAAGGACAGCTTCAGCCCTGCCTGCCCCCTGCTCTAAGCCCTGCAGTACATCTGATGGCCCCCAGGGGGCCCAGGTACTGAAGGGTCTCTCGCAAGCCCAGGAGAGCTGCAGCTGCCCGGTGAGGCCATGTCAGAACTGTCTGAAGTGCAGGAAACCCAACGGGCCCCTGACTGAGCAGCCTGTGCAAGCCAACGGGCCAGTAGTGTGTAACGCTGCCTCTGACGCCTGCAAACAGACAGAGCTCCAGCTGCACAGACTCACCTCCCCAGCCCCACTCCCAACCTCTGCTCTGGGGCTGCCAAaccacctgagaggaggggtggaggttaAAACTGAGAAAGGCAGCCACCTAGAGTCTTGCACCCAGAAAGGTTGTCCACCTTCTTCTTTGATGTGTGTAGCCACAGGGCAGGACATAAAGAGCCAGGCCCACGGGACTCTTTCAGGCATGGCAGGGACTCAGGCCAACCCTCTGAGCTGCTGCAGTGAGCTGAAgctctgccccagccccacccCAGGTGTCCATGTCTTCACCCCACCCAGAGCCGTCAAAGACTCCAGCACAGCAAGACAGCCGACCACCACACCTCCCGGTTTCTCCCCAGGGACAGATCTTAAGGGCAGCTCCATGTTCCCCAGCTCTCTCTTCCCCTTAATAGCAGACCTGTCTGGTGGAATGAAGGCTGTGATGGAAGCGGATGGAGAGATCGAACTGAGTAAACTGGATGAGGAGTTGGTCAAACTCCTGGCCTGGCAGAGGATACAGCAGCTGTTCCCCCACAAAGCAGCCCCAGTCCCCCAAGGCAGCGGTCTGACTGCTTCCTCTCCTCCCACCGTCGCCCTCAAACCTCAATCTCCCGCGCCGTGCACAGAGGAAAAACAGAAGGTGCAGGCGAGAGCAACATTCTATCCACTCATGGGGAAGGGAGGAGCCATCAACATGTCTTATAGGACCCTGTACATAGGAGCTGGTGCTGACATGGATGTGTGCCTTACAAACTATGGTCATTGTAATTATGTATCTGGAAAACACGCCTGCATCTTTTACGACGGGAACACCAAACACTACGAGCTGCTCAACTACAGTGAGCATGGGACCACGGTGGACAACGTGCTCTACTCCTGTGACTTCTCTGAGAAGACTTTGCCCAGCCCGGCCAGTGGCCTGGTGTCCAAAGTGCAGGGCATTGTCcGCCGCTGTAAgatgagagagcagcagcaggaggaggggacCGAGGCTGGGCACAGGACTGTTCTGATGCCATTGGAGGGAGTGATGAGCTGCCAGCCCCAGGGAGGACCAAGGCTCTCCTGCAACTGCAAAGCCAGCAGTTCCAGCCTGATCGGTGGCAGCGGGGCTGGTTGGGAGGGCACAGCGCTGCTCCACCATGGCAGCTACATCAAACTGGGCTGCATGCAGTTTGTCTTCAGCATTGTTGAGTTCGCCAGTAAGCAGCCTAAAGAAGAGGGATCCACTGGCACTGCCAATACCACCCCCGCCAATACCACCCCCAACCAAGAGGGGGCAGACAAACAGACTATCAAACTCCACCAATTGCAACTCTGTGCCAAAGCCCAAACTCTCCCTTTCTCATCTATTTCCAGTCAAACCTAAGGGGAGCAGGTTGTTACACAgggaaaattatatatttttaatttattttgtttATACTTTTGCATGAAATGAAGTTTTATCTCAAATCTGTTTATTTAGATTGACTTACTGAAGAGTATGTGTCACTTATTTTTGCCAGTCTAGttatacatgtatatacagtaccagttaaaagtttggacacctcattacagggtttttctttatttgtactattttctacattgtcgag

Function

NR:

description
PHD finger protein 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965788.1 True 4188 mRNA 0.54 13 26938800 26953641

Neighbor

gene id symbol gene type direction distance location
LOC110507880 LOC106613101 coding downstream 944 26934110 ~ 26937856 (-)
LOC110507878 LOC106581235 coding downstream 6968 26925936 ~ 26931832 (-)
dhrs13a.3 LOC106581234 coding downstream 14353 26921607 ~ 26924447 (-)
LOC118944646 NA coding downstream 211711 26724918 ~ 26727089 (-)
LOC110507877 LOC106581220 coding downstream 309614 26619306 ~ 26629186 (-)
LOC110507882 LOC106613099 coding upstream 1970 26955611 ~ 27086578 (-)
LOC110507883 LOC106581247 coding upstream 172904 27056634 ~ 27297205 (-)
LOC110507142 NA coding upstream 345470 27299111 ~ 27299930 (-)
LOC100135795 LOC100135795 coding upstream 365350 27318991 ~ 27330465 (-)
LOC110507885 LOC106581250 coding upstream 379461 27333102 ~ 27404380 (-)
G2068989 NA non-coding downstream 141517 26777355 ~ 26797283 (-)
G2068976 NA non-coding downstream 148387 26746632 ~ 26790413 (-)
G2068953 NA non-coding downstream 194827 26743756 ~ 26743973 (-)
G2068942 NA non-coding downstream 215449 26723049 ~ 26723351 (-)
G2068937 NA non-coding downstream 220590 26717827 ~ 26718210 (-)
G2069562 NA non-coding upstream 88204 27041845 ~ 27043410 (-)
G2069652 NA non-coding upstream 281717 27235358 ~ 27242859 (-)
G2069672 NA non-coding upstream 329158 27282799 ~ 27283116 (-)
G2069679 NA non-coding upstream 334051 27287692 ~ 27333031 (-)
G2068676 NA other downstream 613321 26325130 ~ 26325479 (-)
G2068043 NA other downstream 1104699 25818639 ~ 25834101 (-)
pcp4b NA other downstream 2756980 24136177 ~ 24181998 (-)
G2066126 LOC106581133 other downstream 3129891 23807738 ~ 23808909 (-)
G2066096 LOC106581136 other downstream 3173321 23763699 ~ 23765479 (-)
LOC110507886 LOC106581251 other upstream 476531 27428483 ~ 27447544 (-)
LOC110507887 LOC106581252 other upstream 494579 27448217 ~ 27500051 (-)
G2069842 NA other upstream 586359 27540000 ~ 27540609 (-)
LOC118944698 LOC106581256 other upstream 915583 27866010 ~ 27871529 (-)

Expression


Co-expression Network