LOC110507882 (LOC106613099)


Basic Information

Item Value
gene id LOC110507882
gene name LOC106613099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 26955611 ~ 27086578 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588268.2
GTCGCTAGGAGCTGTCCGCAGTGCTGAAACGACGGTGGTGCGCTGACTTGAAGAAAGAGAACGGCATACCCAacgatctatctatctatcgatTTAGCGAACGTTGAAATTGAAGTCTCTGTCTATCAGCTGATAACGACATGAGAACATAGCTCTCAGTGGAGCGCCAGTGCTGCGCAGTGTGCGATCCCGAGGTCTCACAGCAAGTGGCTTTTGCTGTACGAGCAGTCTCTATTTCATTTTAAGGAAAAGTGTTGATCCCAAGGACATTCCTTTCTATTAGCAGAGGACCAATACTGAAAGCAAGCATGAGTGCGGCACGAGATTACATAGTCGTTCTGATGGTTCTTTTTGCAATGATGACTGACATAGGCGCTAAAGGCTCCTATTCTGAGGATGGGACGTCCGTCACACAGAGGGGACAGTCTGAGAGTGGTGGCCCCAGCCTGTACCCCACCACACATGACACAGACAGTGAGGTCCCCCTGGTGACAACCGCCCCGACCCTGAATGTCCCCAACCACCACCCTCTCTACAAGGGCTTCCTCTTACAGGAGTCCCTCCAAGGACAGGGGCATTTCTTTGAGGACAGTGGGGGTGTGGAGACCCACCCCGCTATGCCACCCTCAGGTCCCCACTTTGCCAGGGACCCCTCCTCCACTCACACGGTGCCACACAAGGACGCGCTAGTTTTCTCCGATGTTGCCTCAACCACTACCACTGTGGCAACAGCCACGTCACCGTTGGCAACAAAGGGCAGCATTGCTCCAGAGGGGCGTGTCTCTGTGAATCAGAGAGTAGCGTTGACCAATGGcaggggagggaggacagaggaggaagctGATGCCATGGATACCCTGACCACTCCTGTCATGCACACCTCCGCTCCCTCACCCCACTCAAACACCCCCAACCTGGCTGCTCCTATGGGTGATAGGTACTCTGAGGTCCCCACTGCATCCACCATGACTCCCCCAGCCTTGACCACTTTGGTGGAGAAGGTTGCAGGGAAGTCAGAAGAACACAACATGGGCCACGCCAGTGATGGGATAGAGATTGGGACATCGGTAGTATCTGGTGTTGTGGATGAGGAGACCACTTCGaccactataaccacaaccaccatcatcaccaccatgcACTACCCAGCTCCCTGCATCTTCAACTTGACATCACCAGAGGGCTACATAGAGACGCCCCAGCCGTCCAGCTCTCATTCCTACTCCTCTGTGGACTGCACCTACACCGTCACGGTCTACACGGGCTATGGAGTAGAGATACAGGTGATGAACGTGAGCCTGTGGGAGGGGGAGCGGGTGACGTTTGAGGACCTGGGGGGCGGGGAGCCCTCTGTTCTGGCCAACGAGTCTATCCTGTTGAAGGGCCTGGTGGTACGCAGCTGGAGCAACCACATCACCATCCAATTCCACAGCCAGAGACAGACCCAGCCTGGGTCCTTCCTGCTCAGATACCAAGCCTTTGTGTTGAGCTGTACCTTTCCCCAGCGGCCGGTCTGTGGGGATGTGTCTGTGAGCAGCCTCCACTCTGGTGGAGAGGCCTACTTTTACTGTCTGACTGGGTACCAGCTGCAGGGAACCAACACACTGACCTGCCTCAACGCCAGCACCCCCTACTGGAGCGGCACAGAGCCGCAGTGCCACGCTGCCTGTGGTGGCATTGTCCGGAATGCCACGGTCAGCCGCATTGTTTCGCCCGGTTTCCCTGGCAACTACAGCAACAACCTGACGTGCCATTGGCTTCTGGAGGCCCCAGAGGGACAACGAGTGCATGTCCACTTTGAGAAGGTGGCCCTGGCAGAGGACGATGACAGGCTTCTGATCAAAAATGGGAACAACATTGATTCTCCTCCGCTGTATGACTCATATGAGGTGGAGTACCTGCCCAACGAGGGCCTGGTGAGCACCTCCAGATCCCTCTTCATAGAGCTCACCACTGACGGTGCAGGCACCTCCACCGGCATCGCCATCAGATACCAAGCGTTTGCAGTGGGCCACTGCTATGAGACGTTTGTCAAGTACGGTAACTTCACCAGTAATGACAGCACGTGGGCAGTGGGGACGGTGGTAGAGTTCACCTGCGACCCTGGCTACACCCTGGAGCAGGGCTCTGTCATCATTGAGTGCATGGACCACAACAACCCCCAGTGGAACGAGACTGAGCCCGCCTGCAGAGctgTTTGCAGTGGAGAGATGACTGACTCTGCTGGAGTGGTCCTGTCTCCTAACTGGCCGGAGGCCTACGATAGCGGCCAGGACTGCATCTGGGGGATTCAcgtggaggaggacaggaggatcATGCTAGACATCCAAGTCCTCAATATAGGGAAGAACGACCTGCTGACATTCTATGATGGTGATGACCTGACTGCTACAGTGCTGGGCCAGTACGGTGGCTCACGGCCACACTTCAAAATCTACACCTCCATGGCCGACGTCACCATCCAATTCCAGTCTGACCCGGCAACCAACATCTACGGCTATGGCAACGGCTTTGTGGTGCACTTCTTTGAGGTACCTCGTAACGACACGTGTCCGGAGCTCCCAGAGATCACCAACGGATGGAAGAGCACCTCCCACCCTGAGCTGGTCCATGGCACAGTGGTCACCTACCAGTGCTACCCAGGTTTCCAGCTGGTGGGCACAGAGCTGCTCATGTGCCAGTGGGACCTGACCTGGAGCGGAGACCTGCCCAGCTGTGAGAGAGtgctgttGTGTGCCGACCCAGGTACTGTGGAGCACAGTCGAAGGGTGATGTCCGGCCCGCGTTTCACTGTAGgctccacagtccagtacatctGTAACAAGGGCTACACCCTCTCTGGAAACAGCCTGCTCTCCTGCTACAACCACGGCTCCTCCGGACCTAAGTGGAGTGAGAGGCTACCCAAATGTGTTTCAGTGAACTATGAGGCTTGCAGGAACCCTGGCACCCCGTCATACAGCACCCAGATCTCAGAGAAGCCTCTCTATCAGGCCGGGGAGACGCTGCGCTTCTCCTGCCTCAGAGGCCATGAGTTGCTAGGGGAGCCTGTCCTCCGCTGTGTCCCTGGACACCCTTCACAGTGGAGCAGCCTGCCCCCTGTCTGTAGAGCCTCCTCAATGGAGTTTATAAATGAACGCAGGTTAGACATTGCCAGTGCCGACTACAGCATGGAGGGAGCCAACATAGCTCTAACAGTCTTTATACCAGTGGCCCTCATCGTGGTCTTCATCATCGGAATCTACCTTTACTTCTCTAAGGTTCAGGGGAAGCCTATGTGTCTTCCCATGTCCACCTCCTTACCATATGACCACATTCCAGGAGAGTCCACCTTCGACAACTCCCTCTACGAAACAGAGACTACAAACAACGAGGACACAAGAGAGTATGAGGTTTCCATCTAGAGGCCGGACTATGTGTTTCAGCATTGACAGGTCTGGTCTCAAGCCGGTTTGCCTAGTGGAATTTTGTCTACACTCCACTGTCTGATAACACACACCGCTCTTTACTTGCCTCCACCTTTTCCTCTGTCTGCTGAACATATCTCTGCCCAGCCCACAGTGGAAATTGGCCATCACTGCAAAGACTTGAAAACATGATTATTTTTGTAGAGCTTCAACAGCAATGGCCTAACAGCAGTGTTTGTACAGTTTGTATCCTGATATGATCAAACCCTAAAGACGTCAGTCCAATGTGGAACCTCACAAATGGGAAATGCTGTATCTAGTCCGAAAAATGTATGTAGTCCGAAAAATACAATGTGTAAATACAACAGGATATGTTTTTCACACAGCTTGTAGGGCATTTTTATTTTGAGAGAAGGCAAATCACAATAGAGCTAGATTATTCAAGTGATGATTGGAGGGATATCATAATAACTTGATGGACTCTTAAAGCTTTCAAATACACTGGACAATTGaaacacattttcatttttttgtacAGTATCTCCAAATTGCAAAGATGACCCTCTCAAAAACATGTAAACACACCTCTTTTTTTAGTGCAACCTCATATGATTAAAAACATCAGAATGTGCCTTAAATTAAAGGCCCTTTTTAAGCTATGTTCATAACATGTATATTTCTGATACGTCATTGGTTCAGTTTAGATTATTACATTGTTGATTTCATATGGATCATAAAATAGAGATATAGTAATGCAAAGAAAAAGTTTCTTCTCATTCACGTTTTTGTTCACAGTTGTATGTATGTCTTCAAAATGCTGATTAAAAGGTATTCATTAATGATATTGGATTGGCAAACATCTGAAAAGTCCGTGGCAAAGTGTATGTAAGTTCTAGTGCCATTTGTTTTGTGATGAAAACCAGGGAAGGTTAAAGCTTAAGAAGTCAGTTTTGTGGATTGGGGAATTCTCAAAAACTGATGCAATGTATTTGCCAAAAATAATATAGCTGATTCTGTAGGAGAATGCATCACCATTCAAActcaatttttttttatcattgtCACATTTTAATATTTATTCATACAAACAGGTATGATGACAATATTATAATTCTATAATCTAGTTTTGATGCTTTGTATATATACTGATTAATCAACTTCATGAACAAAACACATCCTCAATAAAGTTACTATTCAGAA
>XM_021588269.2
CTGTCGCTAGGAGCTGTCCGCAGTGCTGAAACGACGGTGGTGCGCTGACTTGAAGAAAGAGAACGGCATACCCAacgatctatctatctatcgatTTAGCGAACGTTGAAATTGAAGTCTCTGTCTATCAGCTGATAACGACATGAGAACATAGCTCTCAGTGGAGCGCCAGTGCTGCGCAGTGTGCGATCCCGAGGTCTCACAGCAAGTGGCTTTTGCTGTACGAGCAGTCTCTATTTCATTTTAAGGAAAAGTGTTGATCCCAAGGACATTCCTTTCTATTAGCAGAGGACCAATACTGAAAGCAAGCATGAGTGCGGCACGAGATTACATAGTCGTTCTGATGGTTCTTTTTGCAATGATGACTGACATAGGCGCTAAAGGCTCCTATTCTGAGGATGGGACGTCCGTCACACAGAGGGGACAGTCTGAGAGTGGTGGCCCCAGCCTGTACCCCACCACACATGACACAGACAGTGAGGTCCCCCTGGTGACAACCGCCCCGACCCTGAATGTCCCCAACCACCACCCTCTCTACAAGGGCTTCCTCTTACAGGAGTCCCTCCAAGGACAGGGGCATTTCTTTGAGGACAGTGGGGGTGTGGAGACCCACCCCGCTATGCCACCCTCAGGTCCCCACTTTGCCAGGGACCCCTCCTCCACTCACACGGTGCCACACAAGGACGCGCTAGTTTTCTCCGATGTTGCCTCAACCACTACCACTGTGGCAACAGCCACGTCACCGTTGGCAACAAAGGGCAGCATTGCTCCAGAGGGGCGTGTCTCTGTGAATCAGAGAGTAGCGTTGACCAATGGcaggggagggaggacagaggaggaagctGATGCCATGGATACCCTGACCACTCCTGTCATGCACACCTCCGCTCCCTCACCCCACTCAAACACCCCCAACCTGGCTGCTCCTATGGGTGATAGGTACTCTGAGGTCCCCACTGCATCCACCATGACTCCCCCAGCCTTGACCACTTTGGTGGAGAAGGTTGCAGGGAAGTCAGAAGAACACAACATGGGCCACGCCAGTGATGGGATAGAGATTGGGACATCGGTAGTATCTGGTGTTGTGGATGAGGAGACCACTTCGaccactataaccacaaccaccatcatcaccaccatgcACTACCCAGCTCCCTGCATCTTCAACTTGACATCACCAGAGGGCTACATAGAGACGCCCCAGCCGTCCAGCTCTCATTCCTACTCCTCTGTGGACTGCACCTACACCGTCACGGTCTACACGGGCTATGGAGTAGAGATACAGGTGATGAACGTGAGCCTGTGGGAGGGGGAGCGGGTGACGTTTGAGGACCTGGGGGGCGGGGAGCCCTCTGTTCTGGCCAACGAGTCTATCCTGTTGAAGGGCCTGGTGGTACGCAGCTGGAGCAACCACATCACCATCCAATTCCACAGCCAGAGACAGACCCAGCCTGGGTCCTTCCTGCTCAGATACCAAGCCTTTGTGTTGAGCTGTACCTTTCCCCAGCGGCCGGTCTGTGGGGATGTGTCTGTGAGCAGCCTCCACTCTGGTGGAGAGGCCTACTTTTACTGTCTGACTGGGTACCAGCTGCAGGGAACCAACACACTGACCTGCCTCAACGCCAGCACCCCCTACTGGAGCGGCACAGAGCCGCAGTGCCACGCTGCCTGTGGTGGCATTGTCCGGAATGCCACGGTCAGCCGCATTGTTTCGCCCGGTTTCCCTGGCAACTACAGCAACAACCTGACGTGCCATTGGCTTCTGGAGGCCCCAGAGGGACAACGAGTGCATGTCCACTTTGAGAAGGTGGCCCTGGCAGAGGACGATGACAGGCTTCTGATCAAAAATGGGAACAACATTGATTCTCCTCCGCTGTATGACTCATATGAGGTGGAGTACCTGCCCAACGAGGGCCTGGTGAGCACCTCCAGATCCCTCTTCATAGAGCTCACCACTGACGGTGCAGGCACCTCCACCGGCATCGCCATCAGATACCAAGCGTTTGCAGTGGGCCACTGCTATGAGACGTTTGTCAAGTACGGTAACTTCACCAGTAATGACAGCACGTGGGCAGTGGGGACGGTGGTAGAGTTCACCTGCGACCCTGGCTACACCCTGGAGCAGGGCTCTGTCATCATTGAGTGCATGGACCACAACAACCCCCAGTGGAACGAGACTGAGCCCGCCTGCAGAGctgTTTGCAGTGGAGAGATGACTGACTCTGCTGGAGTGGTCCTGTCTCCTAACTGGCCGGAGGCCTACGATAGCGGCCAGGACTGCATCTGGGGGATTCAcgtggaggaggacaggaggatcATGCTAGACATCCAAGTCCTCAATATAGGGAAGAACGACCTGCTGACATTCTATGATGGTGATGACCTGACTGCTACAGTGCTGGGCCAGTACGGTGGCTCACGGCCACACTTCAAAATCTACACCTCCATGGCCGACGTCACCATCCAATTCCAGTCTGACCCGGCAACCAACATCTACGGCTATGGCAACGGCTTTGTGGTGCACTTCTTTGAGGTACCTCGTAACGACACGTGTCCGGAGCTCCCAGAGATCACCAACGGATGGAAGAGCACCTCCCACCCTGAGCTGGTCCATGGCACAGTGGTCACCTACCAGTGCTACCCAGGTTTCCAGCTGGTGGGCACAGAGCTGCTCATGTGCCAGTGGGACCTGACCTGGAGCGGAGACCTGCCCAGCTGTGAGAGAGtgctgttGTGTGCCGACCCAGGTACTGTGGAGCACAGTCGAAGGGTGATGTCCGGCCCGCGTTTCACTGTAGgctccacagtccagtacatctGTAACAAGGGCTACACCCTCTCTGGAAACAGCCTGCTCTCCTGCTACAACCACGGCTCCTCCGGACCTAAGTGGAGTGAGAGGCTACCCAAATGTGTTTTGAACTATGAGGCTTGCAGGAACCCTGGCACCCCGTCATACAGCACCCAGATCTCAGAGAAGCCTCTCTATCAGGCCGGGGAGACGCTGCGCTTCTCCTGCCTCAGAGGCCATGAGTTGCTAGGGGAGCCTGTCCTCCGCTGTGTCCCTGGACACCCTTCACAGTGGAGCAGCCTGCCCCCTGTCTGTAGAGCCTCCTCAATGGAGTTTATAAATGAACGCAGGTTAGACATTGCCAGTGCCGACTACAGCATGGAGGGAGCCAACATAGCTCTAACAGTCTTTATACCAGTGGCCCTCATCGTGGTCTTCATCATCGGAATCTACCTTTACTTCTCTAAGGTTCAGGGGAAGCCTATGTGTCTTCCCATGTCCACCTCCTTACCATATGACCACATTCCAGGAGAGTCCACCTTCGACAACTCCCTCTACGAAACAGAGACTACAAACAACGAGGACACAAGAGAGTATGAGGTTTCCATCTAGAGGCCGGACTATGTGTTTCAGCATTGACAGGTCTGGTCTCAAGCCGGTTTGCCTAGTGGAATTTTGTCTACACTCCACTGTCTGATAACACACACCGCTCTTTACTTGCCTCCACCTTTTCCTCTGTCTGCTGAACATATCTCTGCCCAGCCCACAGTGGAAATTGGCCATCACTGCAAAGACTTGAAAACATGATTATTTTTGTAGAGCTTCAACAGCAATGGCCTAACAGCAGTGTTTGTACAGTTTGTATCCTGATATGATCAAACCCTAAAGACGTCAGTCCAATGTGGAACCTCACAAATGGGAAATGCTGTATCTAGTCCGAAAAATGTATGTAGTCCGAAAAATACAATGTGTAAATACAACAGGATATGTTTTTCACACAGCTTGTAGGGCATTTTTATTTTGAGAGAAGGCAAATCACAATAGAGCTAGATTATTCAAGTGATGATTGGAGGGATATCATAATAACTTGATGGACTCTTAAAGCTTTCAAATACACTGGACAATTGaaacacattttcatttttttgtacAGTATCTCCAAATTGCAAAGATGACCCTCTCAAAAACATGTAAACACACCTCTTTTTTTAGTGCAACCTCATATGATTAAAAACATCAGAATGTGCCTTAAATTAAAGGCCCTTTTTAAGCTATGTTCATAACATGTATATTTCTGATACGTCATTGGTTCAGTTTAGATTATTACATTGTTGATTTCATATGGATCATAAAATAGAGATATAGTAATGCAAAGAAAAAGTTTCTTCTCATTCACGTTTTTGTTCACAGTTGTATGTATGTCTTCAAAATGCTGATTAAAAGGTATTCATTAATGATATTGGATTGGCAAACATCTGAAAAGTCCGTGGCAAAGTGTATGTAAGTTCTAGTGCCATTTGTTTTGTGATGAAAACCAGGGAAGGTTAAAGCTTAAGAAGTCAGTTTTGTGGATTGGGGAATTCTCAAAAACTGATGCAATGTATTTGCCAAAAATAATATAGCTGATTCTGTAGGAGAATGCATCACCATTCAAActcaatttttttttatcattgtCACATTTTAATATTTATTCATACAAACAGGTATGATGACAATATTATAATTCTATAATCTAGTTTTGATGCTTTGTATATATACTGATTAATCAACTTCATGAACAAAACACATCCTCAATAAAGTTACTATTCAGAA

Function

NR:

description
seizure protein 6-like isoform X2

GO: NA

KEGG:

id description
K24363 SEZ6; seizure protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588268.2 False 4607 mRNA 0.50 18 26955611 27086576
XM_021588269.2 True 4606 mRNA 0.50 18 26955611 27086578

Neighbor

gene id symbol gene type direction distance location
LOC110507881 LOC106581238 coding downstream 1970 26938800 ~ 26953641 (-)
LOC110507880 LOC106613101 coding downstream 17755 26934110 ~ 26937856 (-)
LOC110507878 LOC106581235 coding downstream 23779 26925936 ~ 26931832 (-)
dhrs13a.3 LOC106581234 coding downstream 31164 26921607 ~ 26924447 (-)
LOC118944646 NA coding downstream 228522 26724918 ~ 26727089 (-)
LOC110507883 LOC106581247 coding upstream 39967 27056634 ~ 27297205 (-)
LOC110507142 NA coding upstream 212533 27299111 ~ 27299930 (-)
LOC100135795 LOC100135795 coding upstream 232413 27318991 ~ 27330465 (-)
LOC110507885 LOC106581250 coding upstream 246524 27333102 ~ 27404380 (-)
LOC110507886 LOC106581251 coding upstream 341905 27428483 ~ 27447544 (-)
G2068989 NA non-coding downstream 158328 26777355 ~ 26797283 (-)
G2068976 NA non-coding downstream 165198 26746632 ~ 26790413 (-)
G2068953 NA non-coding downstream 211638 26743756 ~ 26743973 (-)
G2068942 NA non-coding downstream 232260 26723049 ~ 26723351 (-)
G2068937 NA non-coding downstream 237401 26717827 ~ 26718210 (-)
G2069652 NA non-coding upstream 148780 27235358 ~ 27242859 (-)
G2069672 NA non-coding upstream 196221 27282799 ~ 27283116 (-)
G2069679 NA non-coding upstream 201114 27287692 ~ 27333031 (-)
G2069731 NA non-coding upstream 307846 27394424 ~ 27394994 (-)
G2068676 NA other downstream 630132 26325130 ~ 26325479 (-)
G2068043 NA other downstream 1121510 25818639 ~ 25834101 (-)
pcp4b NA other downstream 2773791 24136177 ~ 24181998 (-)
G2066126 LOC106581133 other downstream 3146702 23807738 ~ 23808909 (-)
G2066096 LOC106581136 other downstream 3190132 23763699 ~ 23765479 (-)
LOC110507887 LOC106581252 other upstream 361642 27448217 ~ 27500051 (-)
G2069842 NA other upstream 453422 27540000 ~ 27540609 (-)
LOC118944698 LOC106581256 other upstream 782646 27866010 ~ 27871529 (-)

Expression


Co-expression Network