LOC110507142


Basic Information

Item Value
gene id LOC110507142
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 27299111 ~ 27299930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110507142
ATGTTGACCTTCCATACTGGGGTGCCTAAGCTTGAGAGGTTTCTTGCCCCGGTTGGCTCGGAAGGCGCCCATCCCACGTCAGGCCTCAGCCGGATCCCCCTACCCTCAGGCCTCTATCCTGCCCCCATGATTCCCGGAGTCCCACTACCCCCAGGCTTTGTGCCCTCTCAGGCTCTTAACAGTGTCGGGCAGCAAGTGTTTGCTGTAGCAGAGGAGAATGACTGCTGCACTCTACAGTTCTGTGGCCCCGGCCTTACTTTTCACCCTTCACATCCAGGACAACCTGGGACAGGAAGCAATGACCCTGATAAACCCTTTGAGGTGCGACTCCTGCTTCTTCCCCTGCTACCTGCAAGTGCTGGAGGTGCAGAATCCCTCTGGTAACCCCATAGGGTACGTGGTGCAGAACTGGCACCCTTTCTACACTAAACTCACCATGCAGATTGAGAGGAGTCCCTGGATGAGAAAACGTGGCGGGGAAGATCAGTAAGAAATGGGTTGGATTGCTGCAGGAAGTTGTCAAGATGCAGATAACTTTGTAATCTCATTCCCTATGGAACTGGAAGTGAAGATGAAGGCTGTGTTGCTGGGAGCCTGCTTCCCCATCGACTTTATGAAAACAAATAACTTAAAATCCCAAATTAACTTTTACTCCCACACTTTCTACTCTTAA

Function

NR:

description
hypothetical protein cypCar_00046317, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110507142 True 673 mRNA 0.52 2 27299111 27299930

Neighbor

gene id symbol gene type direction distance location
LOC110507883 LOC106581247 coding downstream 1906 27056634 ~ 27297205 (-)
LOC110507882 LOC106613099 coding downstream 212533 26955611 ~ 27086578 (-)
LOC110507881 LOC106581238 coding downstream 345470 26938800 ~ 26953641 (-)
LOC110507880 LOC106613101 coding downstream 361255 26934110 ~ 26937856 (-)
LOC110507878 LOC106581235 coding downstream 367279 26925936 ~ 26931832 (-)
LOC100135795 LOC100135795 coding upstream 19061 27318991 ~ 27330465 (-)
LOC110507885 LOC106581250 coding upstream 33172 27333102 ~ 27404380 (-)
LOC110507886 LOC106581251 coding upstream 128553 27428483 ~ 27447544 (-)
LOC110507887 LOC106581252 coding upstream 148287 27448217 ~ 27500051 (-)
LOC110507889 LOC106581258 coding upstream 217421 27517351 ~ 27534236 (-)
G2069672 NA non-coding downstream 15995 27282799 ~ 27283116 (-)
G2069652 NA non-coding downstream 56252 27235358 ~ 27242859 (-)
G2069562 NA non-coding downstream 255701 27041845 ~ 27043410 (-)
G2068989 NA non-coding downstream 501828 26777355 ~ 26797283 (-)
G2069731 NA non-coding upstream 94494 27394424 ~ 27394994 (-)
G2069871 NA non-coding upstream 319610 27619540 ~ 27664128 (-)
G2069879 LOC106581256 non-coding upstream 342726 27642656 ~ 27665300 (-)
G2068676 NA other downstream 973632 26325130 ~ 26325479 (-)
G2068043 NA other downstream 1465010 25818639 ~ 25834101 (-)
pcp4b NA other downstream 3117291 24136177 ~ 24181998 (-)
G2066126 LOC106581133 other downstream 3490202 23807738 ~ 23808909 (-)
G2066096 LOC106581136 other downstream 3533632 23763699 ~ 23765479 (-)
G2069842 NA other upstream 240070 27540000 ~ 27540609 (-)
LOC118944698 LOC106581256 other upstream 569294 27866010 ~ 27871529 (-)

Expression


Co-expression Network